1SD0 | Genus

Total Genus 125

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	125
sequence length	356
structure length	356
Chain Sequence	VDQATLDKLEAGFKKLQEASDCKSLLKKHLTKDVFDSIKNKKTGMGATLLDVIQSGVENLDSGVGIYAPDAESYRTFGPLFDPIIDDYHGGFKLTDKHPPKQWGDINTLVGLDPAGQFIISTRVRCGRSLQGYPFNPCLTAEQYKEMEEKVSSTLSSMEDELKGTYYPLTGMSKATQQQLIDDHFLFKEGDRFLQTANACRYWPTGRGIFHNDAKTFLVWVNEEDHLRIISMQKGGDLKTVYKRLVTAVDNIESKLPFSHDDRFGFLTFAPTNLGTTMRASVHIQLPKLAKDRKVLEDIASKFNLQVRGTRGEHTESEGGVYDISNKRRLGLTEYQAVREMQDGILEMIRMEKAAA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 356 atoms

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356 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	The active site cysteine of arginine kinase: structural and functional analysis of partially active mutants pubmed doi rcsb
molecule keywords	Arginine kinase
molecule tags	Transferase
source organism	Limulus polyphemus
total genus	125
structure length	356
sequence length	356
ec nomenclature	ec 2.7.3.3: Arginine kinase.
pdb deposition date	2004-02-12

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00217	ATP-gua_Ptrans	ATP:guanido phosphotransferase, C-terminal catalytic domain
A	PF02807	ATP-gua_PtransN	ATP:guanido phosphotransferase, N-terminal domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.135.10	Mainly Alpha	Orthogonal Bundle	Transferase Creatine Kinase; Chain A, domain 1	ATP:guanido phosphotransferase, N-terminal domain	1sd0A01
3.30.590.10	Alpha Beta	2-Layer Sandwich	Creatine Kinase; Chain A, domain 2	Glutamine synthetase/guanido kinase, catalytic domain	1sd0A02

2BVCA 4HPPA 4Z9MA 3DREA 1VRPA 3JPZA 1LGRA 3NG0A 4XYCA 4BG4B 1BG0A 1RL9A 1FPYA 4ACFA 1U6RA 3L2EB 4RF7A 1F1HA 1CRKA 1QH4A 2J1QA 4LNOA 3ZXRA 1HTOA 3B6RA 1SD0A 3M10A 2LGSA 1QK1A 4BG4A 4BHLA 1HTQA 4LNIA 1I0EA 3L2EA 2CRKA 4GW2A 2GLSA 2WHIA 3DRBA 4GW0A 3JU6A 5J9AA 4GVZA 1G0WA 3JU5A 4RF6A 4GVYA 1M15A 4AM1A 2WGSA 4S17A 1P50A 3JQ3A 4LNFA 5J99A 3ZXVA 4RF9A 4LNNA 3L2DA 4S0RA 1F52A 1P52A 4Q2RA 4RF8A 4LNKA
chains in the Genus database with same CATH superfamily

2BVCA 1CRKA 3NZTA 3B6RA 1SD0A 3FKYA 4LNIA 3L2EA 4GW2A 2D3BA 2D33A 3LVWA 2OJWA 4RF9A 2GWDA 1VA6A 2LGSA 1P52A 3DREA 1VRPA 1LGRA 1BG0A 3LN7A 3L2EB 3ZXRA 3M10A 1QK1A 4BG4A 2QC8A 2GWCA 1I0EA 2D32A 2CRKA 4BAXA 3DRBA 5J9AA 4GVZA 2D3AA 1M15A 4LNFA 5J99A 4LNNA 3L2DA 4S0RA 3IG5A 4LNKA 4HPPA 4Z9MA 3NG0A 4BG4B 1R8GA 3IG8A 1U6RA 4LNOA 1F1HA 2J1QA 1HTOA 4BHLA 2UU7A 3JU6A 1TT4A 1G0WA 3JU5A 4GVYA 3ZXVA 4AM1A 3JQ3A 1F52A 2D3CA 2WGSA 4RF8A 3LN6A 3JPZA 4XYCA 1FPYA 1RL9A 4ACFA 4RF7A 1QH4A 1V4GA 1HTQA 3LVVA 2GLSA 2WHIA 4GW0A 4RF6A 4S17A 1P50A 4Q2RA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2BVC A;  4HPP A;  4Z9M A;  3DRE A;  1VRP A;  3JPZ A;  1LGR A;  3NG0 A;  4XYC A;  4BG4 B;  1BG0 A;  1RL9 A;  1FPY A;  4ACF A;  1U6R A;  3L2E B;  4RF7 A;  1F1H A;  1CRK A;  1QH4 A;  2J1Q A;  4LNO A;  3ZXR A;  1HTO A;  3B6R A;  1SD0 A;  3M10 A;  2LGS A;  1QK1 A;  4BG4 A;  4BHL A;  1HTQ A;  4LNI A;  1I0E A;  3L2E A;  2CRK A;  4GW2 A;  2GLS A;  2WHI A;  3DRB A;  4GW0 A;  3JU6 A;  5J9A A;  4GVZ A;  1G0W A;  3JU5 A;  4RF6 A;  4GVY A;  1M15 A;  4AM1 A;  2WGS A;  4S17 A;  1P50 A;  3JQ3 A;  4LNF A;  5J99 A;  3ZXV A;  4RF9 A;  4LNN A;  3L2D A;  4S0R A;  1F52 A;  1P52 A;  4Q2R A;  4RF8 A;  4LNK A; 
#chains in the Genus database with same CATH topology
 2BVC A;  1CRK A;  3NZT A;  3B6R A;  1SD0 A;  3FKY A;  4LNI A;  3L2E A;  4GW2 A;  2D3B A;  2D33 A;  3LVW A;  2OJW A;  4RF9 A;  2GWD A;  1VA6 A;  2LGS A;  1P52 A;  3DRE A;  1VRP A;  1LGR A;  1BG0 A;  3LN7 A;  3L2E B;  3ZXR A;  3M10 A;  1QK1 A;  4BG4 A;  2QC8 A;  2GWC A;  1I0E A;  2D32 A;  2CRK A;  4BAX A;  3DRB A;  5J9A A;  4GVZ A;  2D3A A;  1M15 A;  4LNF A;  5J99 A;  4LNN A;  3L2D A;  4S0R A;  3IG5 A;  4LNK A;  4HPP A;  4Z9M A;  3NG0 A;  4BG4 B;  1R8G A;  3IG8 A;  1U6R A;  4LNO A;  1F1H A;  2J1Q A;  1HTO A;  4BHL A;  2UU7 A;  3JU6 A;  1TT4 A;  1G0W A;  3JU5 A;  4GVY A;  3ZXV A;  4AM1 A;  3JQ3 A;  1F52 A;  2D3C A;  2WGS A;  4RF8 A;  3LN6 A;  3JPZ A;  4XYC A;  1FPY A;  1RL9 A;  4ACF A;  4RF7 A;  1QH4 A;  1V4G A;  1HTQ A;  3LVV A;  2GLS A;  2WHI A;  4GW0 A;  4RF6 A;  4S17 A;  1P50 A;  4Q2R A; 
#chains in the Genus database with same CATH homology
 2BVC A;  4HPP A;  4Z9M A;  3DRE A;  1VRP A;  3JPZ A;  1LGR A;  3NG0 A;  4XYC A;  4BG4 B;  1BG0 A;  1RL9 A;  1FPY A;  4ACF A;  1U6R A;  3L2E B;  4RF7 A;  1F1H A;  1CRK A;  1QH4 A;  2J1Q A;  4LNO A;  3ZXR A;  1HTO A;  3B6R A;  1SD0 A;  3M10 A;  2LGS A;  1QK1 A;  4BG4 A;  4BHL A;  1HTQ A;  4LNI A;  1I0E A;  3L2E A;  2CRK A;  4GW2 A;  2GLS A;  2WHI A;  3DRB A;  4GW0 A;  3JU6 A;  5J9A A;  4GVZ A;  1G0W A;  3JU5 A;  4RF6 A;  4GVY A;  1M15 A;  4AM1 A;  2WGS A;  4S17 A;  1P50 A;  3JQ3 A;  4LNF A;  5J99 A;  3ZXV A;  4RF9 A;  4LNN A;  3L2D A;  4S0R A;  1F52 A;  1P52 A;  4Q2R A;  4RF8 A;  4LNK A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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1SD0A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations