1W3WA

The 2.1 angstroem resolution structure of annexin a8
Total Genus 116

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
116
sequence length
311
structure length
311
Chain Sequence
SSSHFNPDPDAETLYKAMKGIGTNEQAIIDVLTKRSNTQRQQIAKSFKAQFGKDLTETLKSELSGKFERLIVALMYPPYRYEAKELHDAMKGLGTKEGVIIEILASRTKNQLREIMKAYEEDYGSSLEEDIQADTSGYLERILVCLLQGSRDDVSSFVDPALALQDAQDLYAAGEKIRGTDEMKFITILCTRSATHLLRVFEEYEKIANKSIEDSIKSETHGSLEEAMLTVVKCTQNLHSYFAERLYYAMKGAGTRDGTLIRNIVSRSEIDLNLIKCHFKKMYGKTLSSMIMEDTSGDYKNALLSLVGSDP
5010015020025030030025020015010050
020406080100Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH2 (41-49)AH4 (71-78)AH3 (53-67)AH16 (254-266)AH5 (81-91)AH8 (125-139)TIV2 (93-96)AH13 (210-224)AH6 (96-107)AH15 (238-252)AH14 (228-235)AH10 (153-163)EMPTYAH7 (113-122)AH9 (143-150)AH11 (176-191)O2 (161-206)TIV3 (163-166)TIV4 (192-195)TIV5 (193-196)O1 (196-198)AH12 (198-207)AH17 (273-283)TI1 (283-286)AH18 (288-299)TIV6 (284-287)AH1 (23-34)AH19 (303-310)TIV1 (18-21)Updating...
connected with : NaN
molecule tags Coagulation
source organism Homo sapiens
publication title The Crystal Structure of Annexin A8 is Similar to that of Annexin A3
pubmed doi rcsb
molecule keywords ANNEXIN A8
total genus 116
structure length 311
sequence length 311
ec nomenclature
pdb deposition date 2004-07-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00191 Annexin Annexin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.220.10 Mainly Alpha Orthogonal Bundle Annexin V; domain 1 Annexin 1w3wA02
1.10.220.10 Mainly Alpha Orthogonal Bundle Annexin V; domain 1 Annexin 1w3wA04
1.10.220.10 Mainly Alpha Orthogonal Bundle Annexin V; domain 1 Annexin 1w3wA01
1.10.220.10 Mainly Alpha Orthogonal Bundle Annexin V; domain 1 Annexin 1w3wA03
4EVHA 2HYWA 2IE7A 1AVRA 2IE6A 4X9PA 1N42A 2HYUA 1XJLA 1YJ0A 1YCNA 1YIIA 1ANNA 1AOWA 1DM5A 1G5NA 3BRXA 1AVHA 2ZHIA 2RANA 1ALAA 1BC1A 1BC0A 1BCYA 2Q4CA 2ZHJA 4HREA 1W3WA 1W7BA 1BCZA 1BO9A 2IICA 2HYVA 1HVEA 1ANWA 1N41A 1HM6A 2II2A 1HVFA 1A8AA 1AVCA 2XO2A 1A8BA 1AXNA 2H0LA 1HVGA 1ANXA 1HVDA 2H0KA 2ZOCA 1HAKA 4MDUA 1BCWA 1AEIA 1DK5A 1BC3A 2H0MA 1I4AA 1M9IA 1N44A 1SAVA 4MDVA 1N00A 1AIIA 1W45A 4EVFA 1MCXA 2XO3A
chains in the Genus database with same CATH superfamily
2IE7A 4OIYA 3ABRA 2VXGA 1YCNA 1YIIA 1DM5A 1LKVX 2ZHIA 1BC1A 2Q4CA 3TW5A 2IICA 3USWA 1AVCA 2XO2A 3ABOA 3AJCA 3ABSA 3ABQA 1BCWA 2H0MA 4EVFA 1R8SE 1KU1A 2XO3A 4FHRB 2K6XA 2IE6A 1QC7A 1N42A 1R8QE 2OY9A 1ANNA 2HSNA 1G5NA 1BCYA 4C7PA 2ZHJA 1W7BA 4FQ0C 1Q8DA 3ANYA 1ANWA 1N41A 1HM6A 2II2A 2R09A 4JMOA 2ZOCA 1HVGA 1HAKA 3LTLA 1DK5A 3USYA 4JWLA 4MDVA 1SAVA 2QEZA 1AIIA 4KMUX 1W45A 1AVRA 4L5MA 1YJ0A 1C1KA 3BRXA 4KN4X 1W3WA 1BCZA 1PBVA 1HVEA 1S9DE 1UPTB 1XT0B 1A8AA 4JK1X 4A4PA 1A8BA 1XSZA 4C0AA 4MDUA 1R8ME 1M9IA 1N44A 3SOHB 1MCXA 4Z21A 4JXHA 4EVHA 2HYWA 3AO0A 4D7QA 4D7RA 4X9PA 4KN7X 2R0DA 2HYUA 1XJLA 1RE0B 1AOWA 1AVHA 4JMIA 4HREA 2RANA 1ALAA 1BC0A 1BO9A 2HYVA 3HJLA 3SWVA 1HVFA 1YGMA 4Q2SA 1AXNA 2H0LA 3L8NA 1ANXA 1HVDA 2H0KA 1BC9A 1AEIA 1BC3A 1I4AA 1R4AE 1N00A
chains in the Genus database with same CATH topology
4EVHA 2HYWA 2IE7A 1AVRA 2IE6A 4X9PA 1N42A 2HYUA 1XJLA 1YJ0A 1YCNA 1YIIA 1ANNA 1AOWA 1DM5A 1G5NA 3BRXA 1AVHA 2ZHIA 2RANA 1ALAA 1BC1A 1BC0A 1BCYA 2Q4CA 2ZHJA 4HREA 1W3WA 1W7BA 1BCZA 1BO9A 2IICA 2HYVA 1HVEA 1ANWA 1N41A 1HM6A 2II2A 1HVFA 1A8AA 1AVCA 2XO2A 1A8BA 1AXNA 2H0LA 1HVGA 1ANXA 1HVDA 2H0KA 2ZOCA 1HAKA 4MDUA 1BCWA 1AEIA 1DK5A 1BC3A 2H0MA 1I4AA 1M9IA 1N44A 1SAVA 4MDVA 1N00A 1AIIA 1W45A 4EVFA 1MCXA 2XO3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4EVH A;  2HYW A;  2IE7 A;  1AVR A;  2IE6 A;  4X9P A;  1N42 A;  2HYU A;  1XJL A;  1YJ0 A;  1YCN A;  1YII A;  1ANN A;  1AOW A;  1DM5 A;  1G5N A;  3BRX A;  1AVH A;  2ZHI A;  2RAN A;  1ALA A;  1BC1 A;  1BC0 A;  1BCY A;  2Q4C A;  2ZHJ A;  4HRE A;  1W3W A;  1W7B A;  1BCZ A;  1BO9 A;  2IIC A;  2HYV A;  1HVE A;  1ANW A;  1N41 A;  1HM6 A;  2II2 A;  1HVF A;  1A8A A;  1AVC A;  2XO2 A;  1A8B A;  1AXN A;  2H0L A;  1HVG A;  1ANX A;  1HVD A;  2H0K A;  2ZOC A;  1HAK A;  4MDU A;  1BCW A;  1AEI A;  1DK5 A;  1BC3 A;  2H0M A;  1I4A A;  1M9I A;  1N44 A;  1SAV A;  4MDV A;  1N00 A;  1AII A;  1W45 A;  4EVF A;  1MCX A;  2XO3 A; 
#chains in the Genus database with same CATH topology
 2IE7 A;  4OIY A;  3ABR A;  2VXG A;  1YCN A;  1YII A;  1DM5 A;  1LKV X;  2ZHI A;  1BC1 A;  2Q4C A;  3TW5 A;  2IIC A;  3USW A;  1AVC A;  2XO2 A;  3ABO A;  3AJC A;  3ABS A;  3ABQ A;  1BCW A;  2H0M A;  4EVF A;  1R8S E;  1KU1 A;  2XO3 A;  4FHR B;  2K6X A;  2IE6 A;  1QC7 A;  1N42 A;  1R8Q E;  2OY9 A;  1ANN A;  2HSN A;  1G5N A;  1BCY A;  4C7P A;  2ZHJ A;  1W7B A;  4FQ0 C;  1Q8D A;  3ANY A;  1ANW A;  1N41 A;  1HM6 A;  2II2 A;  2R09 A;  4JMO A;  2ZOC A;  1HVG A;  1HAK A;  3LTL A;  1DK5 A;  3USY A;  4JWL A;  4MDV A;  1SAV A;  2QEZ A;  1AII A;  4KMU X;  1W45 A;  1AVR A;  4L5M A;  1YJ0 A;  1C1K A;  3BRX A;  4KN4 X;  1W3W A;  1BCZ A;  1PBV A;  1HVE A;  1S9D E;  1UPT B;  1XT0 B;  1A8A A;  4JK1 X;  4A4P A;  1A8B A;  1XSZ A;  4C0A A;  4MDU A;  1R8M E;  1M9I A;  1N44 A;  3SOH B;  1MCX A;  4Z21 A;  4JXH A;  4EVH A;  2HYW A;  3AO0 A;  4D7Q A;  4D7R A;  4X9P A;  4KN7 X;  2R0D A;  2HYU A;  1XJL A;  1RE0 B;  1AOW A;  1AVH A;  4JMI A;  4HRE A;  2RAN A;  1ALA A;  1BC0 A;  1BO9 A;  2HYV A;  3HJL A;  3SWV A;  1HVF A;  1YGM A;  4Q2S A;  1AXN A;  2H0L A;  3L8N A;  1ANX A;  1HVD A;  2H0K A;  1BC9 A;  1AEI A;  1BC3 A;  1I4A A;  1R4A E;  1N00 A; 
#chains in the Genus database with same CATH homology
 4EVH A;  2HYW A;  2IE7 A;  1AVR A;  2IE6 A;  4X9P A;  1N42 A;  2HYU A;  1XJL A;  1YJ0 A;  1YCN A;  1YII A;  1ANN A;  1AOW A;  1DM5 A;  1G5N A;  3BRX A;  1AVH A;  2ZHI A;  2RAN A;  1ALA A;  1BC1 A;  1BC0 A;  1BCY A;  2Q4C A;  2ZHJ A;  4HRE A;  1W3W A;  1W7B A;  1BCZ A;  1BO9 A;  2IIC A;  2HYV A;  1HVE A;  1ANW A;  1N41 A;  1HM6 A;  2II2 A;  1HVF A;  1A8A A;  1AVC A;  2XO2 A;  1A8B A;  1AXN A;  2H0L A;  1HVG A;  1ANX A;  1HVD A;  2H0K A;  2ZOC A;  1HAK A;  4MDU A;  1BCW A;  1AEI A;  1DK5 A;  1BC3 A;  2H0M A;  1I4A A;  1M9I A;  1N44 A;  1SAV A;  4MDV A;  1N00 A;  1AII A;  1W45 A;  4EVF A;  1MCX A;  2XO3 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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