1YIIA

Crystal structures of chicken annexin v in complex with ca2+
Total Genus 124

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
124
sequence length
316
structure length
316
Chain Sequence
AKYTRGTVTAFSPFDARADAEALRKAMKGMGTDEETILKILTSRNNAQRQEIASAFKTLFGRDLVDDLKSELTGKFETLMVSLMRPARIFDAHALKHAIKGAGTNEKVLTEILASRTPAEVQNIKQVYMQEYEANLEDKITGETSGHFQRLLVVLLQANRDPDGRVDEALVEKDAQVLFRAGELKWGTDEETFITILGTRSVSHLRRVFDKYMTISGFQIEETIDRETSGDLEKLLLAVVKCIRSVPAYFAETLYYSMKGAGTDDDTLIRVMVSRSEIDLLDIRHEFRKNFAKSLYQMIQKDTSGDYRKALLLLCG
5010015020025030030025020015010050
020406080100120Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTIV4 (277-280)AH1 (17-28)AH2 (35-44)AH3 (47-61)AH5 (75-85)3H1 (88-90)AH8 (119-133)AH6 (91-100)AH7 (107-116)AH17 (266-277)AH10 (147-158)AH11 (169-185)AH12 (191-200)AH13 (203-217)AH15 (232-245)AH14 (221-225)TI1 (227-230)AH18 (281-292)AH20 (306-316)AH19 (296-303)TIV1 (12-15)AH9 (137-144)TIV2 (185-188)TIV3 (188-191)AH16 (247-259)AH4 (65-72)Updating...
connected with : NaN
molecule tags Protein and metal binding protein
publication title Crystal Structures of Chicken Annexin A5 in Complex with Functional Modifiers Ca2+ and Zn2+ Reveal Zn2+ Induced Formation of Non-Planar Assemblies
pubmed rcsb
molecule keywords Annexin A5
total genus 124
structure length 316
sequence length 316
ec nomenclature
pdb deposition date 2005-01-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00191 Annexin Annexin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.220.10 Mainly Alpha Orthogonal Bundle Annexin V; domain 1 Annexin 1yiiA02
1.10.220.10 Mainly Alpha Orthogonal Bundle Annexin V; domain 1 Annexin 1yiiA04
1.10.220.10 Mainly Alpha Orthogonal Bundle Annexin V; domain 1 Annexin 1yiiA01
1.10.220.10 Mainly Alpha Orthogonal Bundle Annexin V; domain 1 Annexin 1yiiA03
1AEIA 1HVFA 1BCZA 2H0LA 1MCXA 1W45A 1AOWA 2H0MA 4X9PA 2XO2A 1AIIA 1ANNA 1BC1A 1XJLA 1AVCA 2HYUA 1HVGA 2IICA 1ANWA 4MDUA 1AVRA 2II2A 1W7BA 1A8AA 1BO9A 2IE7A 1N41A 2ZHIA 1HVDA 1HAKA 4MDVA 1BC0A 2IE6A 1HM6A 1I4AA 1AXNA 2HYWA 2Q4CA 2RANA 3BRXA 1AVHA 1W3WA 2H0KA 1N44A 1BC3A 2HYVA 2XO3A 1BCWA 1YJ0A 2ZHJA 1A8BA 4EVFA 1HVEA 1BCYA 1G5NA 1YCNA 1M9IA 1DM5A 4EVHA 1SAVA 1N42A 1YIIA 1DK5A 2ZOCA 1N00A 4HREA 1ALAA 1ANXA
chains in the Genus database with same CATH superfamily
1HVFA 4A4PA 1R8ME 1W45A 3LTLA 1AOWA 2H0MA 2XO2A 1BC1A 4L5MA 2K6XA 1HVGA 2II2A 1QC7A 1UPTB 3HJLA 3USYA 1HAKA 1R4AE 3ABOA 1HM6A 2RANA 1YJ0A 1YCNA 1SAVA 1N00A 3TW5A 1BCZA 2R09A 1BC9A 1R8SE 4OIYA 1AIIA 4C7PA 1ANNA 2IICA 1XT0B 1S9DE 1Q8DA 1AVRA 3L8NA 1C1KA 2IE7A 4KN4X 3BRXA 2H0KA 2XO3A 1A8BA 2VXGA 1HVEA 4Q2SA 1DM5A 1DK5A 4JK1X 1W7BA 1ANXA 4JWLA 2H0LA 1YGMA 3AO0A 2QEZA 1AVCA 3ANYA 3ABSA 1LKVX 4MDUA 2OY9A 4MDVA 1BC0A 2IE6A 2HYWA 2Q4CA 1W3WA 3ABQA 4FHRB 1BC3A 1R8QE 2ZHJA 1BCWA 4EVFA 4EVHA 1BCYA 1M9IA 4KMUX 1YIIA 1ALAA 1AEIA 1RE0B 2R0DA 3ABRA 4JMIA 3SOHB 1MCXA 1PBVA 4C0AA 4X9PA 1XJLA 4Z21A 2HYUA 3AJCA 1ANWA 4D7QA 3SWVA 1XSZA 4FQ0C 4JMOA 1A8AA 1BO9A 1N41A 2ZHIA 1HVDA 1I4AA 1AXNA 1AVHA 4D7RA 1N44A 1G5NA 1KU1A 3USWA 1N42A 4KN7X 2HSNA 2ZOCA 4JXHA 2HYVA 4HREA
chains in the Genus database with same CATH topology
1AEIA 1HVFA 1BCZA 2H0LA 1MCXA 1W45A 1AOWA 2H0MA 4X9PA 2XO2A 1AIIA 1ANNA 1BC1A 1XJLA 1AVCA 2HYUA 1HVGA 2IICA 1ANWA 4MDUA 1AVRA 2II2A 1W7BA 1A8AA 1BO9A 2IE7A 1N41A 2ZHIA 1HVDA 1HAKA 4MDVA 1BC0A 2IE6A 1HM6A 1I4AA 1AXNA 2HYWA 2Q4CA 2RANA 3BRXA 1AVHA 1W3WA 2H0KA 1N44A 1BC3A 2HYVA 2XO3A 1BCWA 1YJ0A 2ZHJA 1A8BA 4EVFA 1HVEA 1BCYA 1G5NA 1YCNA 1M9IA 1DM5A 4EVHA 1SAVA 1N42A 1YIIA 1DK5A 2ZOCA 1N00A 4HREA 1ALAA 1ANXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1AEI A;  1HVF A;  1BCZ A;  2H0L A;  1MCX A;  1W45 A;  1AOW A;  2H0M A;  4X9P A;  2XO2 A;  1AII A;  1ANN A;  1BC1 A;  1XJL A;  1AVC A;  2HYU A;  1HVG A;  2IIC A;  1ANW A;  4MDU A;  1AVR A;  2II2 A;  1W7B A;  1A8A A;  1BO9 A;  2IE7 A;  1N41 A;  2ZHI A;  1HVD A;  1HAK A;  4MDV A;  1BC0 A;  2IE6 A;  1HM6 A;  1I4A A;  1AXN A;  2HYW A;  2Q4C A;  2RAN A;  3BRX A;  1AVH A;  1W3W A;  2H0K A;  1N44 A;  1BC3 A;  2HYV A;  2XO3 A;  1BCW A;  1YJ0 A;  2ZHJ A;  1A8B A;  4EVF A;  1HVE A;  1BCY A;  1G5N A;  1YCN A;  1M9I A;  1DM5 A;  4EVH A;  1SAV A;  1N42 A;  1YII A;  1DK5 A;  2ZOC A;  1N00 A;  4HRE A;  1ALA A;  1ANX A; 
#chains in the Genus database with same CATH topology
 1HVF A;  4A4P A;  1R8M E;  1W45 A;  3LTL A;  1AOW A;  2H0M A;  2XO2 A;  1BC1 A;  4L5M A;  2K6X A;  1HVG A;  2II2 A;  1QC7 A;  1UPT B;  3HJL A;  3USY A;  1HAK A;  1R4A E;  3ABO A;  1HM6 A;  2RAN A;  1YJ0 A;  1YCN A;  1SAV A;  1N00 A;  3TW5 A;  1BCZ A;  2R09 A;  1BC9 A;  1R8S E;  4OIY A;  1AII A;  4C7P A;  1ANN A;  2IIC A;  1XT0 B;  1S9D E;  1Q8D A;  1AVR A;  3L8N A;  1C1K A;  2IE7 A;  4KN4 X;  3BRX A;  2H0K A;  2XO3 A;  1A8B A;  2VXG A;  1HVE A;  4Q2S A;  1DM5 A;  1DK5 A;  4JK1 X;  1W7B A;  1ANX A;  4JWL A;  2H0L A;  1YGM A;  3AO0 A;  2QEZ A;  1AVC A;  3ANY A;  3ABS A;  1LKV X;  4MDU A;  2OY9 A;  4MDV A;  1BC0 A;  2IE6 A;  2HYW A;  2Q4C A;  1W3W A;  3ABQ A;  4FHR B;  1BC3 A;  1R8Q E;  2ZHJ A;  1BCW A;  4EVF A;  4EVH A;  1BCY A;  1M9I A;  4KMU X;  1YII A;  1ALA A;  1AEI A;  1RE0 B;  2R0D A;  3ABR A;  4JMI A;  3SOH B;  1MCX A;  1PBV A;  4C0A A;  4X9P A;  1XJL A;  4Z21 A;  2HYU A;  3AJC A;  1ANW A;  4D7Q A;  3SWV A;  1XSZ A;  4FQ0 C;  4JMO A;  1A8A A;  1BO9 A;  1N41 A;  2ZHI A;  1HVD A;  1I4A A;  1AXN A;  1AVH A;  4D7R A;  1N44 A;  1G5N A;  1KU1 A;  3USW A;  1N42 A;  4KN7 X;  2HSN A;  2ZOC A;  4JXH A;  2HYV A;  4HRE A; 
#chains in the Genus database with same CATH homology
 1AEI A;  1HVF A;  1BCZ A;  2H0L A;  1MCX A;  1W45 A;  1AOW A;  2H0M A;  4X9P A;  2XO2 A;  1AII A;  1ANN A;  1BC1 A;  1XJL A;  1AVC A;  2HYU A;  1HVG A;  2IIC A;  1ANW A;  4MDU A;  1AVR A;  2II2 A;  1W7B A;  1A8A A;  1BO9 A;  2IE7 A;  1N41 A;  2ZHI A;  1HVD A;  1HAK A;  4MDV A;  1BC0 A;  2IE6 A;  1HM6 A;  1I4A A;  1AXN A;  2HYW A;  2Q4C A;  2RAN A;  3BRX A;  1AVH A;  1W3W A;  2H0K A;  1N44 A;  1BC3 A;  2HYV A;  2XO3 A;  1BCW A;  1YJ0 A;  2ZHJ A;  1A8B A;  4EVF A;  1HVE A;  1BCY A;  1G5N A;  1YCN A;  1M9I A;  1DM5 A;  4EVH A;  1SAV A;  1N42 A;  1YII A;  1DK5 A;  2ZOC A;  1N00 A;  4HRE A;  1ALA A;  1ANX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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