1YJ0 | Genus

Total Genus 118

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	118
sequence length	317
structure length	317
Chain Sequence	KYTRGTVTAFSPFDARADAEALRKAMKGMGTDEETILKILTSRNNAQRQEIASAFKTLFGRDLVDDLKSELTGKFETLMVSLMRPARIFDAHALKHAIKGAGTNEKVLTEILASRTPAEVQNIKQVYMQEYEANLEDKITGETSGHFQRLLVVLLQANRDPDGRVDEALVEKDAQVLFRAGELKWGTDEETFITILGTRSVSHLRRVFDKYMTISGFQIEETIDRETSGDLEKLLLAVVKCIRSVPAYFAETLYYSMKGAGTDDDTLIRVMVSRSEIDLLDIRHEFRKNFAKSLYQMIQKDTSGDYRKALLLLCGGD

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 317 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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317 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Protein and metal binding protein
publication title	Crystal Structures of Chicken Annexin A5 in Complex with Functional Modifiers Ca2+ and Zn2+ Reveal Zn2+ Induced Formation of Non-Planar Assemblies pubmed rcsb
molecule keywords	Annexin A5
total genus	118
structure length	317
sequence length	317
ec nomenclature
pdb deposition date	2005-01-11

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00191	Annexin	Annexin

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.220.10	Mainly Alpha	Orthogonal Bundle	Annexin V; domain 1	Annexin	1yj0A02
1.10.220.10	Mainly Alpha	Orthogonal Bundle	Annexin V; domain 1	Annexin	1yj0A04
1.10.220.10	Mainly Alpha	Orthogonal Bundle	Annexin V; domain 1	Annexin	1yj0A01
1.10.220.10	Mainly Alpha	Orthogonal Bundle	Annexin V; domain 1	Annexin	1yj0A03

4EVHA 2H0KA 1BC3A 1A8BA 1MCXA 1W3WA 1HM6A 1BCZA 1HVGA 1BCWA 2RANA 2HYWA 1M9IA 2Q4CA 1HVDA 1BCYA 1ANWA 1SAVA 1AVHA 3BRXA 1AXNA 4HREA 2H0LA 1DM5A 4MDUA 1W45A 1AVRA 1AEIA 1BO9A 4MDVA 1ALAA 2II2A 2HYUA 1ANNA 1XJLA 4X9PA 1YIIA 1HVEA 2IE6A 2IE7A 4EVFA 1G5NA 1BC1A 1AOWA 1AIIA 1BC0A 1HAKA 1W7BA 2XO2A 2ZHJA 1A8AA 1AVCA 1ANXA 1N41A 1N00A 2HYVA 1YJ0A 1N44A 2H0MA 2IICA 2ZHIA 1DK5A 2XO3A 1I4AA 1HVFA 1YCNA 2ZOCA 1N42A
chains in the Genus database with same CATH superfamily

1MCXA 1A8BA 2VXGA 1HVGA 1M9IA 4JMOA 3ABSA 3BRXA 4A4PA 1W45A 1AVRA 1AEIA 4MDVA 1ALAA 4KN7X 4JMIA 1R8QE 4X9PA 1HVEA 2IE6A 2IE7A 1W7BA 1HAKA 2ZHJA 1Q8DA 4KMUX 3TW5A 1RE0B 3L8NA 4JXHA 1YJ0A 2R09A 1HVFA 1YCNA 4C7PA 2HYWA 4JWLA 3SWVA 2R0DA 4JK1X 4D7RA 1ANWA 1AVHA 3ABQA 4D7QA 1XJLA 1QC7A 1R4AE 4C0AA 4EVFA 1AOWA 2OY9A 4FQ0C 4KN4X 1ANXA 1LKVX 2XO3A 4EVHA 1BC3A 2QEZA 1HM6A 1BCZA 1BCWA 1KU1A 2RANA 4OIYA 4Q2SA 1AXNA 1YGMA 2H0LA 4HREA 4MDUA 3USYA 3AJCA 1S9DE 2II2A 2K6XA 1ANNA 4Z21A 1BC9A 1XT0B 2HSNA 1G5NA 1AIIA 1AVCA 1C1KA 3USWA 1PBVA 2IICA 2H0MA 2ZHIA 4FHRB 1XSZA 1DK5A 3ABOA 1R8ME 1N42A 2H0KA 1W3WA 1UPTB 2Q4CA 1HVDA 1BCYA 3AO0A 1SAVA 1DM5A 1BO9A 3SOHB 3LTLA 2HYUA 1YIIA 3ABRA 3HJLA 1BC1A 1BC0A 2XO2A 1A8AA 1N41A 3ANYA 4L5MA 1N00A 2HYVA 1R8SE 1N44A 1I4AA 2ZOCA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 4EVH A;  2H0K A;  1BC3 A;  1A8B A;  1MCX A;  1W3W A;  1HM6 A;  1BCZ A;  1HVG A;  1BCW A;  2RAN A;  2HYW A;  1M9I A;  2Q4C A;  1HVD A;  1BCY A;  1ANW A;  1SAV A;  1AVH A;  3BRX A;  1AXN A;  4HRE A;  2H0L A;  1DM5 A;  4MDU A;  1W45 A;  1AVR A;  1AEI A;  1BO9 A;  4MDV A;  1ALA A;  2II2 A;  2HYU A;  1ANN A;  1XJL A;  4X9P A;  1YII A;  1HVE A;  2IE6 A;  2IE7 A;  4EVF A;  1G5N A;  1BC1 A;  1AOW A;  1AII A;  1BC0 A;  1HAK A;  1W7B A;  2XO2 A;  2ZHJ A;  1A8A A;  1AVC A;  1ANX A;  1N41 A;  1N00 A;  2HYV A;  1YJ0 A;  1N44 A;  2H0M A;  2IIC A;  2ZHI A;  1DK5 A;  2XO3 A;  1I4A A;  1HVF A;  1YCN A;  2ZOC A;  1N42 A; 
#chains in the Genus database with same CATH topology
 1MCX A;  1A8B A;  2VXG A;  1HVG A;  1M9I A;  4JMO A;  3ABS A;  3BRX A;  4A4P A;  1W45 A;  1AVR A;  1AEI A;  4MDV A;  1ALA A;  4KN7 X;  4JMI A;  1R8Q E;  4X9P A;  1HVE A;  2IE6 A;  2IE7 A;  1W7B A;  1HAK A;  2ZHJ A;  1Q8D A;  4KMU X;  3TW5 A;  1RE0 B;  3L8N A;  4JXH A;  1YJ0 A;  2R09 A;  1HVF A;  1YCN A;  4C7P A;  2HYW A;  4JWL A;  3SWV A;  2R0D A;  4JK1 X;  4D7R A;  1ANW A;  1AVH A;  3ABQ A;  4D7Q A;  1XJL A;  1QC7 A;  1R4A E;  4C0A A;  4EVF A;  1AOW A;  2OY9 A;  4FQ0 C;  4KN4 X;  1ANX A;  1LKV X;  2XO3 A;  4EVH A;  1BC3 A;  2QEZ A;  1HM6 A;  1BCZ A;  1BCW A;  1KU1 A;  2RAN A;  4OIY A;  4Q2S A;  1AXN A;  1YGM A;  2H0L A;  4HRE A;  4MDU A;  3USY A;  3AJC A;  1S9D E;  2II2 A;  2K6X A;  1ANN A;  4Z21 A;  1BC9 A;  1XT0 B;  2HSN A;  1G5N A;  1AII A;  1AVC A;  1C1K A;  3USW A;  1PBV A;  2IIC A;  2H0M A;  2ZHI A;  4FHR B;  1XSZ A;  1DK5 A;  3ABO A;  1R8M E;  1N42 A;  2H0K A;  1W3W A;  1UPT B;  2Q4C A;  1HVD A;  1BCY A;  3AO0 A;  1SAV A;  1DM5 A;  1BO9 A;  3SOH B;  3LTL A;  2HYU A;  1YII A;  3ABR A;  3HJL A;  1BC1 A;  1BC0 A;  2XO2 A;  1A8A A;  1N41 A;  3ANY A;  4L5M A;  1N00 A;  2HYV A;  1R8S E;  1N44 A;  1I4A A;  2ZOC A; 
#chains in the Genus database with same CATH homology
 4EVH A;  2H0K A;  1BC3 A;  1A8B A;  1MCX A;  1W3W A;  1HM6 A;  1BCZ A;  1HVG A;  1BCW A;  2RAN A;  2HYW A;  1M9I A;  2Q4C A;  1HVD A;  1BCY A;  1ANW A;  1SAV A;  1AVH A;  3BRX A;  1AXN A;  4HRE A;  2H0L A;  1DM5 A;  4MDU A;  1W45 A;  1AVR A;  1AEI A;  1BO9 A;  4MDV A;  1ALA A;  2II2 A;  2HYU A;  1ANN A;  1XJL A;  4X9P A;  1YII A;  1HVE A;  2IE6 A;  2IE7 A;  4EVF A;  1G5N A;  1BC1 A;  1AOW A;  1AII A;  1BC0 A;  1HAK A;  1W7B A;  2XO2 A;  2ZHJ A;  1A8A A;  1AVC A;  1ANX A;  1N41 A;  1N00 A;  2HYV A;  1YJ0 A;  1N44 A;  2H0M A;  2IIC A;  2ZHI A;  1DK5 A;  2XO3 A;  1I4A A;  1HVF A;  1YCN A;  2ZOC A;  1N42 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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1YJ0A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations