2AH0D

Crystal structure of the carbinolamine intermediate in the reductive half-reaction of aromatic amine dehydrogenase (aadh) with tryptamine. monoclinic form
Total Genus 26
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
Knots found
sequence length
109
structure length
108
Chain Sequence
EVNSCDYWRHCAVDGFLCSCCGGTTTTCPPGSTPSPISIGTCHNPHDGKDYLISYHDCCGKTACGRCQCNTQTRERPGYEFFLHNDVNWCMANENSTFHCTTSVLVGL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Atomic description of an enzyme reaction dominated by proton tunneling
pubmed doi rcsb
molecule tags Oxidoreductase
molecule keywords Aromatic amine dehydrogenase
total genus 26
structure length 108
sequence length 109
chains with identical sequence H
other databases KnotProt 2.0: K
ec nomenclature ec 1.4.9.2: Aralkylamine dehydrogenase (azurin).
pdb deposition date 2005-07-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF02975 Me-amine-dh_L Methylamine dehydrogenase, L chain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.30.10 Mainly Beta Sandwich Electron Transport Ethylamine Dehydrogenase Methylamine/Aralkylamine dehydrogenase light chain 2ah0D00
1MG2B 3RLMC 4FB1C 2GC4B 1MAEL 2AH0D 2I0SD 3C75L 4K3IC 2J56L 4Y5RC 2OK4D 2AH1D 2OJYD 2HXCD 2AGXD 3PXSC 4L3GC 4O1QC 2HJBD 3SWSC 2HKRD 2IUQD 3RN1C 2IAAB 2BBKL 2AGYD 2H3XB 3L4OC 2Q7QD 3RN0C 2MADL 2GC7B 3ORVC 4FANC 3SXTC 2J55L 2IURD 3L4MC 2I0RD 2OIZD 4FA5C 2MTAL 4L3HC 3SVWC 2H47B 4FA9C 4FA1C 2IUPD 2I0TD 2AGWD 3PXWC 3PXTC 3RMZC 3SJLC 3SLEC 2AGLD 1MG3B 2J57K 4FAVC 2AGZD 1MDAL 2OK6D 4L1QC 2HJ4D 2HKMD 2IUVD 4FA4C 1MAFL
chains in the Genus database with same CATH superfamily
1MG2B 3RLMC 4FB1C 2GC4B 1MAEL 2AH0D 2I0SD 3C75L 4K3IC 2J56L 4Y5RC 2OK4D 2AH1D 2OJYD 2HXCD 2AGXD 3PXSC 4L3GC 4O1QC 2HJBD 3SWSC 2HKRD 2IUQD 3RN1C 2IAAB 2BBKL 2AGYD 2H3XB 3L4OC 2Q7QD 3RN0C 2MADL 2GC7B 3ORVC 4FANC 3SXTC 2J55L 2IURD 3L4MC 2I0RD 2OIZD 4FA5C 2MTAL 4L3HC 3SVWC 2H47B 4FA9C 4FA1C 2IUPD 2I0TD 2AGWD 3PXWC 3PXTC 3RMZC 3SJLC 3SLEC 2AGLD 1MG3B 2J57K 4FAVC 2AGZD 1MDAL 2OK6D 4L1QC 2HJ4D 2HKMD 2IUVD 4FA4C 1MAFL
chains in the Genus database with same CATH topology
1MG2B 3RLMC 4FB1C 2GC4B 1MAEL 2AH0D 2I0SD 3C75L 4K3IC 2J56L 4Y5RC 2OK4D 2AH1D 2OJYD 2HXCD 2AGXD 3PXSC 4L3GC 4O1QC 2HJBD 3SWSC 2HKRD 2IUQD 3RN1C 2IAAB 2BBKL 2AGYD 2H3XB 3L4OC 2Q7QD 3RN0C 2MADL 2GC7B 3ORVC 4FANC 3SXTC 2J55L 2IURD 3L4MC 2I0RD 2OIZD 4FA5C 2MTAL 4L3HC 3SVWC 2H47B 4FA9C 4FA1C 2IUPD 2I0TD 2AGWD 3PXWC 3PXTC 3RMZC 3SJLC 3SLEC 2AGLD 1MG3B 2J57K 4FAVC 2AGZD 1MDAL 2OK6D 4L1QC 2HJ4D 2HKMD 2IUVD 4FA4C 1MAFL
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1MG2 B;  3RLM C;  4FB1 C;  2GC4 B;  1MAE L;  2AH0 D;  2I0S D;  3C75 L;  4K3I C;  2J56 L;  4Y5R C;  2OK4 D;  2AH1 D;  2OJY D;  2HXC D;  2AGX D;  3PXS C;  4L3G C;  4O1Q C;  2HJB D;  3SWS C;  2HKR D;  2IUQ D;  3RN1 C;  2IAA B;  2BBK L;  2AGY D;  2H3X B;  3L4O C;  2Q7Q D;  3RN0 C;  2MAD L;  2GC7 B;  3ORV C;  4FAN C;  3SXT C;  2J55 L;  2IUR D;  3L4M C;  2I0R D;  2OIZ D;  4FA5 C;  2MTA L;  4L3H C;  3SVW C;  2H47 B;  4FA9 C;  4FA1 C;  2IUP D;  2I0T D;  2AGW D;  3PXW C;  3PXT C;  3RMZ C;  3SJL C;  3SLE C;  2AGL D;  1MG3 B;  2J57 K;  4FAV C;  2AGZ D;  1MDA L;  2OK6 D;  4L1Q C;  2HJ4 D;  2HKM D;  2IUV D;  4FA4 C;  1MAF L; 
#chains in the Genus database with same CATH topology
 1MG2 B;  3RLM C;  4FB1 C;  2GC4 B;  1MAE L;  2AH0 D;  2I0S D;  3C75 L;  4K3I C;  2J56 L;  4Y5R C;  2OK4 D;  2AH1 D;  2OJY D;  2HXC D;  2AGX D;  3PXS C;  4L3G C;  4O1Q C;  2HJB D;  3SWS C;  2HKR D;  2IUQ D;  3RN1 C;  2IAA B;  2BBK L;  2AGY D;  2H3X B;  3L4O C;  2Q7Q D;  3RN0 C;  2MAD L;  2GC7 B;  3ORV C;  4FAN C;  3SXT C;  2J55 L;  2IUR D;  3L4M C;  2I0R D;  2OIZ D;  4FA5 C;  2MTA L;  4L3H C;  3SVW C;  2H47 B;  4FA9 C;  4FA1 C;  2IUP D;  2I0T D;  2AGW D;  3PXW C;  3PXT C;  3RMZ C;  3SJL C;  3SLE C;  2AGL D;  1MG3 B;  2J57 K;  4FAV C;  2AGZ D;  1MDA L;  2OK6 D;  4L1Q C;  2HJ4 D;  2HKM D;  2IUV D;  4FA4 C;  1MAF L; 
#chains in the Genus database with same CATH homology
 1MG2 B;  3RLM C;  4FB1 C;  2GC4 B;  1MAE L;  2AH0 D;  2I0S D;  3C75 L;  4K3I C;  2J56 L;  4Y5R C;  2OK4 D;  2AH1 D;  2OJY D;  2HXC D;  2AGX D;  3PXS C;  4L3G C;  4O1Q C;  2HJB D;  3SWS C;  2HKR D;  2IUQ D;  3RN1 C;  2IAA B;  2BBK L;  2AGY D;  2H3X B;  3L4O C;  2Q7Q D;  3RN0 C;  2MAD L;  2GC7 B;  3ORV C;  4FAN C;  3SXT C;  2J55 L;  2IUR D;  3L4M C;  2I0R D;  2OIZ D;  4FA5 C;  2MTA L;  4L3H C;  3SVW C;  2H47 B;  4FA9 C;  4FA1 C;  2IUP D;  2I0T D;  2AGW D;  3PXW C;  3PXT C;  3RMZ C;  3SJL C;  3SLE C;  2AGL D;  1MG3 B;  2J57 K;  4FAV C;  2AGZ D;  1MDA L;  2OK6 D;  4L1Q C;  2HJ4 D;  2HKM D;  2IUV D;  4FA4 C;  1MAF L; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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