The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
31
|
Knots found |
|
sequence length |
125
|
structure length |
124
|
Chain Sequence |
TDPRAKWVPQDNDIQACDYWRHCSIDGNICDCSGGSLTNCPPGTKLATASVASCYNPTDGQSYLIAYRDCCGYNVSGRCPCLNTEGELPVYRPEFANDIIWCFGAEDDAMTYHCTISPIVGKAS
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Electron transport
|
| source organism |
Paracoccus denitrificans
|
| publication title |
Refined crystal structure of methylamine dehydrogenase from Paracoccus denitrificans at 1.75 A resolution.
pubmed doi rcsb |
| molecule keywords |
METHYLAMINE DEHYDROGENASE (HEAVY SUBUNIT)
|
| total genus |
31
|
| structure length |
124
|
| sequence length |
125
|
| chains with identical sequence |
M
|
| other databases |
 KnotProt 2.0: K
|
| ec nomenclature |
ec
1.4.9.1: Methylamine dehydrogenase (amicyanin). |
| pdb deposition date | 1993-12-17 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| L | PF02975 | Me-amine-dh_L | Methylamine dehydrogenase, L chain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Sandwich | Electron Transport Ethylamine Dehydrogenase | Methylamine/Aralkylamine dehydrogenase light chain |
#chains in the Genus database with same CATH superfamily 1MDA L; 2IUQ D; 4Y5R C; 2HJ4 D; 2IUR D; 2IUP D; 3PXW C; 2HKM D; 4FA4 C; 2AGX D; 1MG3 B; 2BBK L; 3RMZ C; 1MAE L; 2HJB D; 3RLM C; 3SXT C; 1MG2 B; 2AGW D; 4FA9 C; 2IAA B; 2OK6 D; 2IUV D; 2H3X B; 2GC7 B; 2J55 L; 2GC4 B; 2HXC D; 4FAN C; 4FA1 C; 2OK4 D; 4L3H C; 2MAD L; 4L3G C; 3L4O C; 4L1Q C; 2I0R D; 3C75 L; 2H47 B; 2AGY D; 1MAF L; 3SJL C; 3SLE C; 2OJY D; 4K3I C; 2I0T D; 3PXT C; 2Q7Q D; 2OIZ D; 2AH1 D; 4O1Q C; 3ORV C; 2I0S D; 2J57 K; 3RN0 C; 2AGL D; 2AH0 D; 2J56 L; 4FAV C; 4FB1 C; 3SWS C; 4FA5 C; 3SVW C; 3PXS C; 2MTA L; 3L4M C; 2HKR D; 3RN1 C; 2AGZ D; #chains in the Genus database with same CATH topology 1MDA L; 2IUQ D; 4Y5R C; 2HJ4 D; 2IUR D; 2IUP D; 3PXW C; 2HKM D; 4FA4 C; 2AGX D; 1MG3 B; 2BBK L; 3RMZ C; 1MAE L; 2HJB D; 3RLM C; 3SXT C; 1MG2 B; 2AGW D; 4FA9 C; 2IAA B; 2OK6 D; 2IUV D; 2H3X B; 2GC7 B; 2J55 L; 2GC4 B; 2HXC D; 4FAN C; 4FA1 C; 2OK4 D; 4L3H C; 2MAD L; 4L3G C; 3L4O C; 4L1Q C; 2I0R D; 3C75 L; 2H47 B; 2AGY D; 1MAF L; 3SJL C; 3SLE C; 2OJY D; 4K3I C; 2I0T D; 3PXT C; 2Q7Q D; 2OIZ D; 2AH1 D; 4O1Q C; 3ORV C; 2I0S D; 2J57 K; 3RN0 C; 2AGL D; 2AH0 D; 2J56 L; 4FAV C; 4FB1 C; 3SWS C; 4FA5 C; 3SVW C; 3PXS C; 2MTA L; 3L4M C; 2HKR D; 3RN1 C; 2AGZ D; #chains in the Genus database with same CATH homology 1MDA L; 2IUQ D; 4Y5R C; 2HJ4 D; 2IUR D; 2IUP D; 3PXW C; 2HKM D; 4FA4 C; 2AGX D; 1MG3 B; 2BBK L; 3RMZ C; 1MAE L; 2HJB D; 3RLM C; 3SXT C; 1MG2 B; 2AGW D; 4FA9 C; 2IAA B; 2OK6 D; 2IUV D; 2H3X B; 2GC7 B; 2J55 L; 2GC4 B; 2HXC D; 4FAN C; 4FA1 C; 2OK4 D; 4L3H C; 2MAD L; 4L3G C; 3L4O C; 4L1Q C; 2I0R D; 3C75 L; 2H47 B; 2AGY D; 1MAF L; 3SJL C; 3SLE C; 2OJY D; 4K3I C; 2I0T D; 3PXT C; 2Q7Q D; 2OIZ D; 2AH1 D; 4O1Q C; 3ORV C; 2I0S D; 2J57 K; 3RN0 C; 2AGL D; 2AH0 D; 2J56 L; 4FAV C; 4FB1 C; 3SWS C; 4FA5 C; 3SVW C; 3PXS C; 2MTA L; 3L4M C; 2HKR D; 3RN1 C; 2AGZ D;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
