2HJBD

Crystal structure of alcaligenes faecalis aadh in complex with p-methoxybenzylamine
Total Genus 25
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
25
Knots found
sequence length
110
structure length
109
Chain Sequence
EVNSCDYWRHCAVDGFLCSCCGGTTTTCPPGSTPSPISIGTCHNPHDGKDYLISYHDCCGKTACGRCQCNTQTRERPGYEFFLHNDVNWCMANENSTFHCTTSVLVGLA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Isotope effects reveal that para-substituted benzylamines are poor reactivity probes of the quinoprotein mechanism for aromatic amine dehydrogenase.
pubmed doi rcsb
molecule tags Oxidoreductase
molecule keywords Aromatic amine dehydrogenase
total genus 25
structure length 109
sequence length 110
chains with identical sequence H
other databases KnotProt 2.0: K
ec nomenclature ec 1.4.9.2: Aralkylamine dehydrogenase (azurin).
pdb deposition date 2006-06-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF02975 Me-amine-dh_L Methylamine dehydrogenase, L chain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.30.10 Mainly Beta Sandwich Electron Transport Ethylamine Dehydrogenase Methylamine/Aralkylamine dehydrogenase light chain 2hjbD00
2I0SD 1MG3B 4FA9C 3RLMC 4L1QC 2HJ4D 3C75L 3PXWC 4O1QC 3RN1C 4FAVC 3SWSC 2IURD 3PXSC 2AH1D 2MTAL 2I0TD 2J55L 2BBKL 3L4OC 2OK4D 2OIZD 4FA5C 2GC4B 3SXTC 3RN0C 2AGXD 2HKRD 3L4MC 2H47B 2OK6D 2IUPD 3SLEC 3SVWC 2J56L 3RMZC 4Y5RC 2H3XB 2HKMD 4L3HC 4FA1C 2I0RD 2MADL 2IUQD 2HJBD 3SJLC 2AGWD 1MG2B 4FB1C 1MAEL 2GC7B 2AGLD 2AGZD 2IUVD 2OJYD 3PXTC 2HXCD 4FANC 1MDAL 2Q7QD 2AH0D 2J57K 4K3IC 2IAAB 4L3GC 2AGYD 3ORVC 1MAFL 4FA4C
chains in the Genus database with same CATH superfamily
2I0SD 1MG3B 4FA9C 3RLMC 4L1QC 2HJ4D 3C75L 3PXWC 4O1QC 3RN1C 4FAVC 3SWSC 2IURD 3PXSC 2AH1D 2MTAL 2I0TD 2J55L 2BBKL 3L4OC 2OK4D 2OIZD 4FA5C 2GC4B 3SXTC 3RN0C 2AGXD 2HKRD 3L4MC 2H47B 2OK6D 2IUPD 3SLEC 3SVWC 2J56L 3RMZC 4Y5RC 2H3XB 2HKMD 4L3HC 4FA1C 2I0RD 2MADL 2IUQD 2HJBD 3SJLC 2AGWD 1MG2B 4FB1C 1MAEL 2GC7B 2AGLD 2AGZD 2IUVD 2OJYD 3PXTC 2HXCD 4FANC 1MDAL 2Q7QD 2AH0D 2J57K 4K3IC 2IAAB 4L3GC 2AGYD 3ORVC 1MAFL 4FA4C
chains in the Genus database with same CATH topology
2I0SD 1MG3B 4FA9C 3RLMC 4L1QC 2HJ4D 3C75L 3PXWC 4O1QC 3RN1C 4FAVC 3SWSC 2IURD 3PXSC 2AH1D 2MTAL 2I0TD 2J55L 2BBKL 3L4OC 2OK4D 2OIZD 4FA5C 2GC4B 3SXTC 3RN0C 2AGXD 2HKRD 3L4MC 2H47B 2OK6D 2IUPD 3SLEC 3SVWC 2J56L 3RMZC 4Y5RC 2H3XB 2HKMD 4L3HC 4FA1C 2I0RD 2MADL 2IUQD 2HJBD 3SJLC 2AGWD 1MG2B 4FB1C 1MAEL 2GC7B 2AGLD 2AGZD 2IUVD 2OJYD 3PXTC 2HXCD 4FANC 1MDAL 2Q7QD 2AH0D 2J57K 4K3IC 2IAAB 4L3GC 2AGYD 3ORVC 1MAFL 4FA4C
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2I0S D;  1MG3 B;  4FA9 C;  3RLM C;  4L1Q C;  2HJ4 D;  3C75 L;  3PXW C;  4O1Q C;  3RN1 C;  4FAV C;  3SWS C;  2IUR D;  3PXS C;  2AH1 D;  2MTA L;  2I0T D;  2J55 L;  2BBK L;  3L4O C;  2OK4 D;  2OIZ D;  4FA5 C;  2GC4 B;  3SXT C;  3RN0 C;  2AGX D;  2HKR D;  3L4M C;  2H47 B;  2OK6 D;  2IUP D;  3SLE C;  3SVW C;  2J56 L;  3RMZ C;  4Y5R C;  2H3X B;  2HKM D;  4L3H C;  4FA1 C;  2I0R D;  2MAD L;  2IUQ D;  2HJB D;  3SJL C;  2AGW D;  1MG2 B;  4FB1 C;  1MAE L;  2GC7 B;  2AGL D;  2AGZ D;  2IUV D;  2OJY D;  3PXT C;  2HXC D;  4FAN C;  1MDA L;  2Q7Q D;  2AH0 D;  2J57 K;  4K3I C;  2IAA B;  4L3G C;  2AGY D;  3ORV C;  1MAF L;  4FA4 C; 
#chains in the Genus database with same CATH topology
 2I0S D;  1MG3 B;  4FA9 C;  3RLM C;  4L1Q C;  2HJ4 D;  3C75 L;  3PXW C;  4O1Q C;  3RN1 C;  4FAV C;  3SWS C;  2IUR D;  3PXS C;  2AH1 D;  2MTA L;  2I0T D;  2J55 L;  2BBK L;  3L4O C;  2OK4 D;  2OIZ D;  4FA5 C;  2GC4 B;  3SXT C;  3RN0 C;  2AGX D;  2HKR D;  3L4M C;  2H47 B;  2OK6 D;  2IUP D;  3SLE C;  3SVW C;  2J56 L;  3RMZ C;  4Y5R C;  2H3X B;  2HKM D;  4L3H C;  4FA1 C;  2I0R D;  2MAD L;  2IUQ D;  2HJB D;  3SJL C;  2AGW D;  1MG2 B;  4FB1 C;  1MAE L;  2GC7 B;  2AGL D;  2AGZ D;  2IUV D;  2OJY D;  3PXT C;  2HXC D;  4FAN C;  1MDA L;  2Q7Q D;  2AH0 D;  2J57 K;  4K3I C;  2IAA B;  4L3G C;  2AGY D;  3ORV C;  1MAF L;  4FA4 C; 
#chains in the Genus database with same CATH homology
 2I0S D;  1MG3 B;  4FA9 C;  3RLM C;  4L1Q C;  2HJ4 D;  3C75 L;  3PXW C;  4O1Q C;  3RN1 C;  4FAV C;  3SWS C;  2IUR D;  3PXS C;  2AH1 D;  2MTA L;  2I0T D;  2J55 L;  2BBK L;  3L4O C;  2OK4 D;  2OIZ D;  4FA5 C;  2GC4 B;  3SXT C;  3RN0 C;  2AGX D;  2HKR D;  3L4M C;  2H47 B;  2OK6 D;  2IUP D;  3SLE C;  3SVW C;  2J56 L;  3RMZ C;  4Y5R C;  2H3X B;  2HKM D;  4L3H C;  4FA1 C;  2I0R D;  2MAD L;  2IUQ D;  2HJB D;  3SJL C;  2AGW D;  1MG2 B;  4FB1 C;  1MAE L;  2GC7 B;  2AGL D;  2AGZ D;  2IUV D;  2OJY D;  3PXT C;  2HXC D;  4FAN C;  1MDA L;  2Q7Q D;  2AH0 D;  2J57 K;  4K3I C;  2IAA B;  4L3G C;  2AGY D;  3ORV C;  1MAF L;  4FA4 C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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