2I0TD

Crystal structure of phenylacetaldehyde derived r-carbinolamine adduct of aromatic amine dehydrogenase
Total Genus 35
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
35
Knots found
sequence length
121
structure length
120
Chain Sequence
HISLNPDLANEDEVNSCDYWRHCAVDGFLCSCCGGTTTTCPPGSTPSPISIGTCHNPHDGKDYLISYHDCCGKTACGRCQCNTQTRERPGYEFFLHNDVNWCMANENSTFHCTTSVLVGL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title New insights into the reductive half-reaction mechanism of aromatic amine dehydrogenase revealed by reaction with carbinolamine substrates.
pubmed doi rcsb
molecule tags Oxidoreductase
molecule keywords Aromatic amine dehydrogenase
total genus 35
structure length 120
sequence length 121
chains with identical sequence H
other databases KnotProt 2.0: K
ec nomenclature ec 1.4.9.2: Aralkylamine dehydrogenase (azurin).
pdb deposition date 2006-08-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF02975 Me-amine-dh_L Methylamine dehydrogenase, L chain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.30.10 Mainly Beta Sandwich Electron Transport Ethylamine Dehydrogenase Methylamine/Aralkylamine dehydrogenase light chain 2i0tD00
2OK6D 1MG2B 3RLMC 4FAVC 4FA9C 4O1QC 2GC7B 2HJ4D 2GC4B 2J55L 3C75L 3L4OC 1MAEL 3PXSC 4FA5C 2BBKL 3SWSC 2AH0D 2H47B 2I0SD 2AGZD 2AGLD 4FA1C 2IUVD 2HXCD 2MADL 3RN1C 2IUPD 3ORVC 4Y5RC 2OIZD 3RMZC 2H3XB 3SXTC 3RN0C 4K3IC 2AGYD 4FB1C 2J56L 2IURD 2OK4D 2Q7QD 1MG3B 2J57K 3L4MC 3PXWC 3SLEC 3PXTC 4FA4C 2IAAB 4L1QC 2AGWD 1MAFL 2AGXD 4L3HC 3SJLC 2AH1D 2I0RD 4L3GC 2HKMD 2MTAL 1MDAL 2OJYD 2IUQD 3SVWC 2HJBD 2I0TD 2HKRD 4FANC
chains in the Genus database with same CATH superfamily
2OK6D 1MG2B 3RLMC 4FAVC 4FA9C 4O1QC 2GC7B 2HJ4D 2GC4B 2J55L 3C75L 3L4OC 1MAEL 3PXSC 4FA5C 2BBKL 3SWSC 2AH0D 2H47B 2I0SD 2AGZD 2AGLD 4FA1C 2IUVD 2HXCD 2MADL 3RN1C 2IUPD 3ORVC 4Y5RC 2OIZD 3RMZC 2H3XB 3SXTC 3RN0C 4K3IC 2AGYD 4FB1C 2J56L 2IURD 2OK4D 2Q7QD 1MG3B 2J57K 3L4MC 3PXWC 3SLEC 3PXTC 4FA4C 2IAAB 4L1QC 2AGWD 1MAFL 2AGXD 4L3HC 3SJLC 2AH1D 2I0RD 4L3GC 2HKMD 2MTAL 1MDAL 2OJYD 2IUQD 3SVWC 2HJBD 2I0TD 2HKRD 4FANC
chains in the Genus database with same CATH topology
2OK6D 1MG2B 3RLMC 4FAVC 4FA9C 4O1QC 2GC7B 2HJ4D 2GC4B 2J55L 3C75L 3L4OC 1MAEL 3PXSC 4FA5C 2BBKL 3SWSC 2AH0D 2H47B 2I0SD 2AGZD 2AGLD 4FA1C 2IUVD 2HXCD 2MADL 3RN1C 2IUPD 3ORVC 4Y5RC 2OIZD 3RMZC 2H3XB 3SXTC 3RN0C 4K3IC 2AGYD 4FB1C 2J56L 2IURD 2OK4D 2Q7QD 1MG3B 2J57K 3L4MC 3PXWC 3SLEC 3PXTC 4FA4C 2IAAB 4L1QC 2AGWD 1MAFL 2AGXD 4L3HC 3SJLC 2AH1D 2I0RD 4L3GC 2HKMD 2MTAL 1MDAL 2OJYD 2IUQD 3SVWC 2HJBD 2I0TD 2HKRD 4FANC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2OK6 D;  1MG2 B;  3RLM C;  4FAV C;  4FA9 C;  4O1Q C;  2GC7 B;  2HJ4 D;  2GC4 B;  2J55 L;  3C75 L;  3L4O C;  1MAE L;  3PXS C;  4FA5 C;  2BBK L;  3SWS C;  2AH0 D;  2H47 B;  2I0S D;  2AGZ D;  2AGL D;  4FA1 C;  2IUV D;  2HXC D;  2MAD L;  3RN1 C;  2IUP D;  3ORV C;  4Y5R C;  2OIZ D;  3RMZ C;  2H3X B;  3SXT C;  3RN0 C;  4K3I C;  2AGY D;  4FB1 C;  2J56 L;  2IUR D;  2OK4 D;  2Q7Q D;  1MG3 B;  2J57 K;  3L4M C;  3PXW C;  3SLE C;  3PXT C;  4FA4 C;  2IAA B;  4L1Q C;  2AGW D;  1MAF L;  2AGX D;  4L3H C;  3SJL C;  2AH1 D;  2I0R D;  4L3G C;  2HKM D;  2MTA L;  1MDA L;  2OJY D;  2IUQ D;  3SVW C;  2HJB D;  2I0T D;  2HKR D;  4FAN C; 
#chains in the Genus database with same CATH topology
 2OK6 D;  1MG2 B;  3RLM C;  4FAV C;  4FA9 C;  4O1Q C;  2GC7 B;  2HJ4 D;  2GC4 B;  2J55 L;  3C75 L;  3L4O C;  1MAE L;  3PXS C;  4FA5 C;  2BBK L;  3SWS C;  2AH0 D;  2H47 B;  2I0S D;  2AGZ D;  2AGL D;  4FA1 C;  2IUV D;  2HXC D;  2MAD L;  3RN1 C;  2IUP D;  3ORV C;  4Y5R C;  2OIZ D;  3RMZ C;  2H3X B;  3SXT C;  3RN0 C;  4K3I C;  2AGY D;  4FB1 C;  2J56 L;  2IUR D;  2OK4 D;  2Q7Q D;  1MG3 B;  2J57 K;  3L4M C;  3PXW C;  3SLE C;  3PXT C;  4FA4 C;  2IAA B;  4L1Q C;  2AGW D;  1MAF L;  2AGX D;  4L3H C;  3SJL C;  2AH1 D;  2I0R D;  4L3G C;  2HKM D;  2MTA L;  1MDA L;  2OJY D;  2IUQ D;  3SVW C;  2HJB D;  2I0T D;  2HKR D;  4FAN C; 
#chains in the Genus database with same CATH homology
 2OK6 D;  1MG2 B;  3RLM C;  4FAV C;  4FA9 C;  4O1Q C;  2GC7 B;  2HJ4 D;  2GC4 B;  2J55 L;  3C75 L;  3L4O C;  1MAE L;  3PXS C;  4FA5 C;  2BBK L;  3SWS C;  2AH0 D;  2H47 B;  2I0S D;  2AGZ D;  2AGL D;  4FA1 C;  2IUV D;  2HXC D;  2MAD L;  3RN1 C;  2IUP D;  3ORV C;  4Y5R C;  2OIZ D;  3RMZ C;  2H3X B;  3SXT C;  3RN0 C;  4K3I C;  2AGY D;  4FB1 C;  2J56 L;  2IUR D;  2OK4 D;  2Q7Q D;  1MG3 B;  2J57 K;  3L4M C;  3PXW C;  3SLE C;  3PXT C;  4FA4 C;  2IAA B;  4L1Q C;  2AGW D;  1MAF L;  2AGX D;  4L3H C;  3SJL C;  2AH1 D;  2I0R D;  4L3G C;  2HKM D;  2MTA L;  1MDA L;  2OJY D;  2IUQ D;  3SVW C;  2HJB D;  2I0T D;  2HKR D;  4FAN C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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