2IICA

Calcium bound structure of alpha-11 giardin
Total Genus 121

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
121
sequence length
302
structure length
302
Chain Sequence
DAIPEVKAILEAKNEEELVTFTSRWSAEERKELRTQFQDTTGLEFIAFLKKCIKNGPYEDVMALGWDCNISARVNVIKKAMKNVNDFRAIHDVVLIATPDERLKLAQAYKEKTGNDLLQDFVDQIPLTSAASYLCHLAIRENRTPRGSVASDAEVLKHNLIDADEPDHEAVVRLIITSTADEYKEINHRFEVLTGKSVQEAIETRYADKENARGLCIAHYYNLAPARAVAYAFHSAVETQNDDMAYEQAARITGLFHDLHKFAWVHYACWGVMRDDILSRFQSKEANKVNFRDACLMFWKLA
5010015020025030030025020015010050
020406080100120Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (5-15)AH4 (48-53)3H2 (289-291)AH2 (18-27)AH5 (60-69)AH17 (245-260)AH3 (30-43)TIV1 (53-56)AH6 (72-84)TIV2 (84-87)AH9 (120-127)O1 (88-90)AH7 (90-98)TIV3 (85-88)AH15 (212-225)O2 (129-131)EMPTYAH8 (102-114)TIV4 (114-117)AH10 (133-141)AH12 (171-179)AH11 (152-163)TVIII1 (166-169)AH14 (201-208)AH13 (183-197)AH16 (228-241)AH19 (276-283)AH18 (265-269)O3 (283-285)TIV5 (141-144)AH20 (293-302)TIV7 (260-263)3H1 (270-273)Updating...
connected with : NaN
molecule tags Metal binding protein
source organism Giardia intestinalis
publication title Apo and Calcium-bound Crystal Structures of Alpha-11 Giardin, an Unusual Annexin from Giardia lamblia
pubmed doi rcsb
molecule keywords Alpha-11 giardin
total genus 121
structure length 302
sequence length 302
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2006-09-27
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.220.10 Mainly Alpha Orthogonal Bundle Annexin V; domain 1 Annexin 2iicA04
1.10.220.10 Mainly Alpha Orthogonal Bundle Annexin V; domain 1 Annexin 2iicA01
1.10.220.10 Mainly Alpha Orthogonal Bundle Annexin V; domain 1 Annexin 2iicA02
1.10.220.10 Mainly Alpha Orthogonal Bundle Annexin V; domain 1 Annexin 2iicA03
1HM6A 4HREA 2II2A 1HVGA 1AVCA 1YIIA 1A8AA 2HYVA 1BO9A 1HVEA 2ZHIA 4X9PA 2IE7A 2HYWA 1AXNA 1N42A 1ANNA 2H0MA 1YCNA 1AVRA 1HVDA 1MCXA 1ANWA 1BC3A 1N44A 2RANA 1SAVA 2Q4CA 4EVFA 2XO2A 1AVHA 4MDUA 2H0KA 3BRXA 1W3WA 1AOWA 1N00A 1YJ0A 2H0LA 1BC0A 1DK5A 1ANXA 4MDVA 4EVHA 1AIIA 1I4AA 1BCYA 1AEIA 1HVFA 1BCZA 2ZHJA 1W7BA 2HYUA 2IICA 1A8BA 2ZOCA 1ALAA 1BC1A 2IE6A 1HAKA 1W45A 1N41A 1BCWA 1XJLA 2XO3A 1M9IA 1DM5A 1G5NA
chains in the Genus database with same CATH superfamily
4HREA 2II2A 1HVGA 2R0DA 1YIIA 4A4PA 1A8AA 4X9PA 1YGMA 2HYWA 1LKVX 1N42A 1S9DE 2H0MA 4KN4X 1ANWA 1SAVA 1PBVA 3USYA 4JMOA 1YJ0A 1R8QE 4EVHA 4FHRB 4JWLA 4FQ0C 1BCZA 3USWA 2IICA 1A8BA 1R8ME 2ZOCA 1ALAA 1BCWA 1HM6A 4KN7X 4Q2SA 1XSZA 1Q8DA 2HYVA 4C0AA 2R09A 1BO9A 2ZHIA 1AXNA 2QEZA 1MCXA 2OY9A 2RANA 3AJCA 3LTLA 3AO0A 2HSNA 3TW5A 3BRXA 1AOWA 2K6XA 1BC0A 1DK5A 1ANXA 4JMIA 1AEIA 1HVFA 2ZHJA 4D7RA 2HYUA 1BC9A 1BC1A 1KU1A 4C7PA 1XJLA 2VXGA 1QC7A 1R4AE 3ABQA 1HVEA 3ANYA 4EVFA 1BC3A 2XO2A 1RE0B 1N00A 2H0LA 4MDVA 1AIIA 3SOHB 1I4AA 1BCYA 4JK1X 1HAKA 3ABOA 4L5MA 1C1KA 4KMUX 1DM5A 1N41A 1R8SE 1AVCA 4JXHA 2IE7A 1ANNA 1YCNA 3ABRA 1AVRA 1HVDA 1N44A 2Q4CA 1AVHA 4D7QA 4MDUA 3L8NA 2H0KA 1W3WA 4Z21A 3SWVA 4OIYA 1UPTB 1W7BA 1XT0B 3ABSA 2IE6A 1W45A 3HJLA 2XO3A 1M9IA 1G5NA
chains in the Genus database with same CATH topology
1HM6A 4HREA 2II2A 1HVGA 1AVCA 1YIIA 1A8AA 2HYVA 1BO9A 1HVEA 2ZHIA 4X9PA 2IE7A 2HYWA 1AXNA 1N42A 1ANNA 2H0MA 1YCNA 1AVRA 1HVDA 1MCXA 1ANWA 1BC3A 1N44A 2RANA 1SAVA 2Q4CA 4EVFA 2XO2A 1AVHA 4MDUA 2H0KA 3BRXA 1W3WA 1AOWA 1N00A 1YJ0A 2H0LA 1BC0A 1DK5A 1ANXA 4MDVA 4EVHA 1AIIA 1I4AA 1BCYA 1AEIA 1HVFA 1BCZA 2ZHJA 1W7BA 2HYUA 2IICA 1A8BA 2ZOCA 1ALAA 1BC1A 2IE6A 1HAKA 1W45A 1N41A 1BCWA 1XJLA 2XO3A 1M9IA 1DM5A 1G5NA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1HM6 A;  4HRE A;  2II2 A;  1HVG A;  1AVC A;  1YII A;  1A8A A;  2HYV A;  1BO9 A;  1HVE A;  2ZHI A;  4X9P A;  2IE7 A;  2HYW A;  1AXN A;  1N42 A;  1ANN A;  2H0M A;  1YCN A;  1AVR A;  1HVD A;  1MCX A;  1ANW A;  1BC3 A;  1N44 A;  2RAN A;  1SAV A;  2Q4C A;  4EVF A;  2XO2 A;  1AVH A;  4MDU A;  2H0K A;  3BRX A;  1W3W A;  1AOW A;  1N00 A;  1YJ0 A;  2H0L A;  1BC0 A;  1DK5 A;  1ANX A;  4MDV A;  4EVH A;  1AII A;  1I4A A;  1BCY A;  1AEI A;  1HVF A;  1BCZ A;  2ZHJ A;  1W7B A;  2HYU A;  2IIC A;  1A8B A;  2ZOC A;  1ALA A;  1BC1 A;  2IE6 A;  1HAK A;  1W45 A;  1N41 A;  1BCW A;  1XJL A;  2XO3 A;  1M9I A;  1DM5 A;  1G5N A; 
#chains in the Genus database with same CATH topology
 4HRE A;  2II2 A;  1HVG A;  2R0D A;  1YII A;  4A4P A;  1A8A A;  4X9P A;  1YGM A;  2HYW A;  1LKV X;  1N42 A;  1S9D E;  2H0M A;  4KN4 X;  1ANW A;  1SAV A;  1PBV A;  3USY A;  4JMO A;  1YJ0 A;  1R8Q E;  4EVH A;  4FHR B;  4JWL A;  4FQ0 C;  1BCZ A;  3USW A;  2IIC A;  1A8B A;  1R8M E;  2ZOC A;  1ALA A;  1BCW A;  1HM6 A;  4KN7 X;  4Q2S A;  1XSZ A;  1Q8D A;  2HYV A;  4C0A A;  2R09 A;  1BO9 A;  2ZHI A;  1AXN A;  2QEZ A;  1MCX A;  2OY9 A;  2RAN A;  3AJC A;  3LTL A;  3AO0 A;  2HSN A;  3TW5 A;  3BRX A;  1AOW A;  2K6X A;  1BC0 A;  1DK5 A;  1ANX A;  4JMI A;  1AEI A;  1HVF A;  2ZHJ A;  4D7R A;  2HYU A;  1BC9 A;  1BC1 A;  1KU1 A;  4C7P A;  1XJL A;  2VXG A;  1QC7 A;  1R4A E;  3ABQ A;  1HVE A;  3ANY A;  4EVF A;  1BC3 A;  2XO2 A;  1RE0 B;  1N00 A;  2H0L A;  4MDV A;  1AII A;  3SOH B;  1I4A A;  1BCY A;  4JK1 X;  1HAK A;  3ABO A;  4L5M A;  1C1K A;  4KMU X;  1DM5 A;  1N41 A;  1R8S E;  1AVC A;  4JXH A;  2IE7 A;  1ANN A;  1YCN A;  3ABR A;  1AVR A;  1HVD A;  1N44 A;  2Q4C A;  1AVH A;  4D7Q A;  4MDU A;  3L8N A;  2H0K A;  1W3W A;  4Z21 A;  3SWV A;  4OIY A;  1UPT B;  1W7B A;  1XT0 B;  3ABS A;  2IE6 A;  1W45 A;  3HJL A;  2XO3 A;  1M9I A;  1G5N A; 
#chains in the Genus database with same CATH homology
 1HM6 A;  4HRE A;  2II2 A;  1HVG A;  1AVC A;  1YII A;  1A8A A;  2HYV A;  1BO9 A;  1HVE A;  2ZHI A;  4X9P A;  2IE7 A;  2HYW A;  1AXN A;  1N42 A;  1ANN A;  2H0M A;  1YCN A;  1AVR A;  1HVD A;  1MCX A;  1ANW A;  1BC3 A;  1N44 A;  2RAN A;  1SAV A;  2Q4C A;  4EVF A;  2XO2 A;  1AVH A;  4MDU A;  2H0K A;  3BRX A;  1W3W A;  1AOW A;  1N00 A;  1YJ0 A;  2H0L A;  1BC0 A;  1DK5 A;  1ANX A;  4MDV A;  4EVH A;  1AII A;  1I4A A;  1BCY A;  1AEI A;  1HVF A;  1BCZ A;  2ZHJ A;  1W7B A;  2HYU A;  2IIC A;  1A8B A;  2ZOC A;  1ALA A;  1BC1 A;  2IE6 A;  1HAK A;  1W45 A;  1N41 A;  1BCW A;  1XJL A;  2XO3 A;  1M9I A;  1DM5 A;  1G5N A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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