2IUVD

Crystal structure of n-quinol form of aromatic amine dehydrogenase (aadh) from alcaligenes faecalis, form b
Total Genus 29
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
29
sequence length
109
structure length
108
Chain Sequence
EVNSCDYWRHCAVDGFLCSCCGGTTTTCPPGSTPSPISIGTCHNPHDGKDYLISYHDCCGKTACGRCQCNTQTRERPGYEFFLHNDVNWCMANENSTFHCTTSVLVGL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Atomic level insight into the oxidative half-reaction of aromatic amine dehydrogenase.
pubmed doi rcsb
molecule tags Oxidoreductase
molecule keywords AROMATIC AMINE DEHYDROGENASE ALPHA SUBUNIT
total genus 29
structure length 108
sequence length 109
chains with identical sequence H
ec nomenclature ec 1.4.9.2: Aralkylamine dehydrogenase (azurin).
pdb deposition date 2006-06-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF02975 Me-amine-dh_L Methylamine dehydrogenase, L chain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.30.10 Mainly Beta Sandwich Electron Transport Ethylamine Dehydrogenase Methylamine/Aralkylamine dehydrogenase light chain 2iuvD00
2BBKL 3L4OC 3SLEC 3PXSC 1MG3B 3SJLC 1MDAL 2HKMD 4O1QC 2AGLD 3PXTC 2AH1D 4L3GC 2IAAB 2OK6D 3SVWC 4FA4C 2H3XB 2I0SD 2IUQD 4FAVC 3RN0C 2MADL 2AH0D 3PXWC 4L3HC 4FB1C 1MG2B 3RMZC 3RN1C 2H47B 2OJYD 3L4MC 4Y5RC 2AGXD 4FANC 2AGWD 2AGYD 2I0TD 2IUPD 2GC4B 2Q7QD 3SXTC 1MAFL 3C75L 2GC7B 4K3IC 2J56L 2J55L 4L1QC 2AGZD 4FA9C 2OK4D 2IUVD 2J57K 4FA5C 2HXCD 2IURD 2HJ4D 2HKRD 2OIZD 1MAEL 2MTAL 2I0RD 3ORVC 2HJBD 3RLMC 4FA1C 3SWSC
chains in the Genus database with same CATH superfamily
2BBKL 3L4OC 3SLEC 3PXSC 1MG3B 3SJLC 1MDAL 2HKMD 4O1QC 2AGLD 3PXTC 2AH1D 4L3GC 2IAAB 2OK6D 3SVWC 4FA4C 2H3XB 2I0SD 2IUQD 4FAVC 3RN0C 2MADL 2AH0D 3PXWC 4L3HC 4FB1C 1MG2B 3RMZC 3RN1C 2H47B 2OJYD 3L4MC 4Y5RC 2AGXD 4FANC 2AGWD 2AGYD 2I0TD 2IUPD 2GC4B 2Q7QD 3SXTC 1MAFL 3C75L 2GC7B 4K3IC 2J56L 2J55L 4L1QC 2AGZD 4FA9C 2OK4D 2IUVD 2J57K 4FA5C 2HXCD 2IURD 2HJ4D 2HKRD 2OIZD 1MAEL 2MTAL 2I0RD 3ORVC 2HJBD 3RLMC 4FA1C 3SWSC
chains in the Genus database with same CATH topology
2BBKL 3L4OC 3SLEC 3PXSC 1MG3B 3SJLC 1MDAL 2HKMD 4O1QC 2AGLD 3PXTC 2AH1D 4L3GC 2IAAB 2OK6D 3SVWC 4FA4C 2H3XB 2I0SD 2IUQD 4FAVC 3RN0C 2MADL 2AH0D 3PXWC 4L3HC 4FB1C 1MG2B 3RMZC 3RN1C 2H47B 2OJYD 3L4MC 4Y5RC 2AGXD 4FANC 2AGWD 2AGYD 2I0TD 2IUPD 2GC4B 2Q7QD 3SXTC 1MAFL 3C75L 2GC7B 4K3IC 2J56L 2J55L 4L1QC 2AGZD 4FA9C 2OK4D 2IUVD 2J57K 4FA5C 2HXCD 2IURD 2HJ4D 2HKRD 2OIZD 1MAEL 2MTAL 2I0RD 3ORVC 2HJBD 3RLMC 4FA1C 3SWSC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2BBK L;  3L4O C;  3SLE C;  3PXS C;  1MG3 B;  3SJL C;  1MDA L;  2HKM D;  4O1Q C;  2AGL D;  3PXT C;  2AH1 D;  4L3G C;  2IAA B;  2OK6 D;  3SVW C;  4FA4 C;  2H3X B;  2I0S D;  2IUQ D;  4FAV C;  3RN0 C;  2MAD L;  2AH0 D;  3PXW C;  4L3H C;  4FB1 C;  1MG2 B;  3RMZ C;  3RN1 C;  2H47 B;  2OJY D;  3L4M C;  4Y5R C;  2AGX D;  4FAN C;  2AGW D;  2AGY D;  2I0T D;  2IUP D;  2GC4 B;  2Q7Q D;  3SXT C;  1MAF L;  3C75 L;  2GC7 B;  4K3I C;  2J56 L;  2J55 L;  4L1Q C;  2AGZ D;  4FA9 C;  2OK4 D;  2IUV D;  2J57 K;  4FA5 C;  2HXC D;  2IUR D;  2HJ4 D;  2HKR D;  2OIZ D;  1MAE L;  2MTA L;  2I0R D;  3ORV C;  2HJB D;  3RLM C;  4FA1 C;  3SWS C; 
#chains in the Genus database with same CATH topology
 2BBK L;  3L4O C;  3SLE C;  3PXS C;  1MG3 B;  3SJL C;  1MDA L;  2HKM D;  4O1Q C;  2AGL D;  3PXT C;  2AH1 D;  4L3G C;  2IAA B;  2OK6 D;  3SVW C;  4FA4 C;  2H3X B;  2I0S D;  2IUQ D;  4FAV C;  3RN0 C;  2MAD L;  2AH0 D;  3PXW C;  4L3H C;  4FB1 C;  1MG2 B;  3RMZ C;  3RN1 C;  2H47 B;  2OJY D;  3L4M C;  4Y5R C;  2AGX D;  4FAN C;  2AGW D;  2AGY D;  2I0T D;  2IUP D;  2GC4 B;  2Q7Q D;  3SXT C;  1MAF L;  3C75 L;  2GC7 B;  4K3I C;  2J56 L;  2J55 L;  4L1Q C;  2AGZ D;  4FA9 C;  2OK4 D;  2IUV D;  2J57 K;  4FA5 C;  2HXC D;  2IUR D;  2HJ4 D;  2HKR D;  2OIZ D;  1MAE L;  2MTA L;  2I0R D;  3ORV C;  2HJB D;  3RLM C;  4FA1 C;  3SWS C; 
#chains in the Genus database with same CATH homology
 2BBK L;  3L4O C;  3SLE C;  3PXS C;  1MG3 B;  3SJL C;  1MDA L;  2HKM D;  4O1Q C;  2AGL D;  3PXT C;  2AH1 D;  4L3G C;  2IAA B;  2OK6 D;  3SVW C;  4FA4 C;  2H3X B;  2I0S D;  2IUQ D;  4FAV C;  3RN0 C;  2MAD L;  2AH0 D;  3PXW C;  4L3H C;  4FB1 C;  1MG2 B;  3RMZ C;  3RN1 C;  2H47 B;  2OJY D;  3L4M C;  4Y5R C;  2AGX D;  4FAN C;  2AGW D;  2AGY D;  2I0T D;  2IUP D;  2GC4 B;  2Q7Q D;  3SXT C;  1MAF L;  3C75 L;  2GC7 B;  4K3I C;  2J56 L;  2J55 L;  4L1Q C;  2AGZ D;  4FA9 C;  2OK4 D;  2IUV D;  2J57 K;  4FA5 C;  2HXC D;  2IUR D;  2HJ4 D;  2HKR D;  2OIZ D;  1MAE L;  2MTA L;  2I0R D;  3ORV C;  2HJB D;  3RLM C;  4FA1 C;  3SWS C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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