2Q7QD

Crystal structure of alcaligenes faecalis aadh in complex with p-chlorobenzylamine.
Total Genus 24
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
Knots found
sequence length
109
structure length
108
Chain Sequence
EVNSCDYWRHCAVDGFLCSCCGGTTTTCPPGSTPSPISIGTCHNPHDGKDYLISYHDCCGKTACGRCQCNTQTRERPGYEFFLHNDVNWCMANENSTFHCTTSVLVGL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Isotope effects reveal that para-substituted benzylamines are poor reactivity probes of the quinoprotein mechanism for aromatic amine dehydrogenase.
pubmed doi rcsb
molecule tags Oxidoreductase
source organism Alcaligenes faecalis
molecule keywords Aralkylamine dehydrogenase light chain
total genus 24
structure length 108
sequence length 109
chains with identical sequence H
other databases KnotProt 2.0: K
ec nomenclature ec 1.4.9.2: Aralkylamine dehydrogenase (azurin).
pdb deposition date 2007-06-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF02975 Me-amine-dh_L Methylamine dehydrogenase, L chain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.30.10 Mainly Beta Sandwich Electron Transport Ethylamine Dehydrogenase Methylamine/Aralkylamine dehydrogenase light chain 2q7qD00
4FB1C 1MAFL 2MADL 2I0RD 1MDAL 2AGLD 2MTAL 2OK4D 3L4MC 4K3IC 3SJLC 3SLEC 4FA4C 2AH0D 3SWSC 3ORVC 2Q7QD 2OIZD 1MG2B 2I0TD 3RN0C 2OK6D 1MG3B 2HJ4D 4Y5RC 3SVWC 4FAVC 2H3XB 2HKRD 4L1QC 2I0SD 4FANC 2IUPD 3RMZC 3C75L 3RLMC 4FA1C 2GC4B 2IAAB 2IUVD 2IURD 3PXSC 2AH1D 3SXTC 2OJYD 4FA5C 3L4OC 2J55L 2J57K 2HJBD 2AGXD 2J56L 2HKMD 1MAEL 3PXTC 2BBKL 4L3HC 2AGWD 2IUQD 2HXCD 3RN1C 4O1QC 2GC7B 4L3GC 2AGYD 2H47B 4FA9C 2AGZD 3PXWC
chains in the Genus database with same CATH superfamily
4FB1C 1MAFL 2MADL 2I0RD 1MDAL 2AGLD 2MTAL 2OK4D 3L4MC 4K3IC 3SJLC 3SLEC 4FA4C 2AH0D 3SWSC 3ORVC 2Q7QD 2OIZD 1MG2B 2I0TD 3RN0C 2OK6D 1MG3B 2HJ4D 4Y5RC 3SVWC 4FAVC 2H3XB 2HKRD 4L1QC 2I0SD 4FANC 2IUPD 3RMZC 3C75L 3RLMC 4FA1C 2GC4B 2IAAB 2IUVD 2IURD 3PXSC 2AH1D 3SXTC 2OJYD 4FA5C 3L4OC 2J55L 2J57K 2HJBD 2AGXD 2J56L 2HKMD 1MAEL 3PXTC 2BBKL 4L3HC 2AGWD 2IUQD 2HXCD 3RN1C 4O1QC 2GC7B 4L3GC 2AGYD 2H47B 4FA9C 2AGZD 3PXWC
chains in the Genus database with same CATH topology
4FB1C 1MAFL 2MADL 2I0RD 1MDAL 2AGLD 2MTAL 2OK4D 3L4MC 4K3IC 3SJLC 3SLEC 4FA4C 2AH0D 3SWSC 3ORVC 2Q7QD 2OIZD 1MG2B 2I0TD 3RN0C 2OK6D 1MG3B 2HJ4D 4Y5RC 3SVWC 4FAVC 2H3XB 2HKRD 4L1QC 2I0SD 4FANC 2IUPD 3RMZC 3C75L 3RLMC 4FA1C 2GC4B 2IAAB 2IUVD 2IURD 3PXSC 2AH1D 3SXTC 2OJYD 4FA5C 3L4OC 2J55L 2J57K 2HJBD 2AGXD 2J56L 2HKMD 1MAEL 3PXTC 2BBKL 4L3HC 2AGWD 2IUQD 2HXCD 3RN1C 4O1QC 2GC7B 4L3GC 2AGYD 2H47B 4FA9C 2AGZD 3PXWC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4FB1 C;  1MAF L;  2MAD L;  2I0R D;  1MDA L;  2AGL D;  2MTA L;  2OK4 D;  3L4M C;  4K3I C;  3SJL C;  3SLE C;  4FA4 C;  2AH0 D;  3SWS C;  3ORV C;  2Q7Q D;  2OIZ D;  1MG2 B;  2I0T D;  3RN0 C;  2OK6 D;  1MG3 B;  2HJ4 D;  4Y5R C;  3SVW C;  4FAV C;  2H3X B;  2HKR D;  4L1Q C;  2I0S D;  4FAN C;  2IUP D;  3RMZ C;  3C75 L;  3RLM C;  4FA1 C;  2GC4 B;  2IAA B;  2IUV D;  2IUR D;  3PXS C;  2AH1 D;  3SXT C;  2OJY D;  4FA5 C;  3L4O C;  2J55 L;  2J57 K;  2HJB D;  2AGX D;  2J56 L;  2HKM D;  1MAE L;  3PXT C;  2BBK L;  4L3H C;  2AGW D;  2IUQ D;  2HXC D;  3RN1 C;  4O1Q C;  2GC7 B;  4L3G C;  2AGY D;  2H47 B;  4FA9 C;  2AGZ D;  3PXW C; 
#chains in the Genus database with same CATH topology
 4FB1 C;  1MAF L;  2MAD L;  2I0R D;  1MDA L;  2AGL D;  2MTA L;  2OK4 D;  3L4M C;  4K3I C;  3SJL C;  3SLE C;  4FA4 C;  2AH0 D;  3SWS C;  3ORV C;  2Q7Q D;  2OIZ D;  1MG2 B;  2I0T D;  3RN0 C;  2OK6 D;  1MG3 B;  2HJ4 D;  4Y5R C;  3SVW C;  4FAV C;  2H3X B;  2HKR D;  4L1Q C;  2I0S D;  4FAN C;  2IUP D;  3RMZ C;  3C75 L;  3RLM C;  4FA1 C;  2GC4 B;  2IAA B;  2IUV D;  2IUR D;  3PXS C;  2AH1 D;  3SXT C;  2OJY D;  4FA5 C;  3L4O C;  2J55 L;  2J57 K;  2HJB D;  2AGX D;  2J56 L;  2HKM D;  1MAE L;  3PXT C;  2BBK L;  4L3H C;  2AGW D;  2IUQ D;  2HXC D;  3RN1 C;  4O1Q C;  2GC7 B;  4L3G C;  2AGY D;  2H47 B;  4FA9 C;  2AGZ D;  3PXW C; 
#chains in the Genus database with same CATH homology
 4FB1 C;  1MAF L;  2MAD L;  2I0R D;  1MDA L;  2AGL D;  2MTA L;  2OK4 D;  3L4M C;  4K3I C;  3SJL C;  3SLE C;  4FA4 C;  2AH0 D;  3SWS C;  3ORV C;  2Q7Q D;  2OIZ D;  1MG2 B;  2I0T D;  3RN0 C;  2OK6 D;  1MG3 B;  2HJ4 D;  4Y5R C;  3SVW C;  4FAV C;  2H3X B;  2HKR D;  4L1Q C;  2I0S D;  4FAN C;  2IUP D;  3RMZ C;  3C75 L;  3RLM C;  4FA1 C;  2GC4 B;  2IAA B;  2IUV D;  2IUR D;  3PXS C;  2AH1 D;  3SXT C;  2OJY D;  4FA5 C;  3L4O C;  2J55 L;  2J57 K;  2HJB D;  2AGX D;  2J56 L;  2HKM D;  1MAE L;  3PXT C;  2BBK L;  4L3H C;  2AGW D;  2IUQ D;  2HXC D;  3RN1 C;  4O1Q C;  2GC7 B;  4L3G C;  2AGY D;  2H47 B;  4FA9 C;  2AGZ D;  3PXW C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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