2VXG | Genus

Total Genus 49

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	49
sequence length	135
structure length	131
Chain Sequence	GAMGDSIKQLLMAGQINKAFHQALLANDLGLVEFTLRHTDSNQAFARLEQKVLLSLIQQISADMTNHNELKQRYLNEALLAINMADPITREHAPKVLTELYRNCQQFIKNSPKNSQFSNVRLLMKAIITYR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 131 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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131 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Gene regulation
source organism	Drosophila melanogaster
publication title	The C-Terminal Region of Ge-1 Presents Conserved Structural Features Required for P-Body Localization. pubmed doi rcsb
molecule keywords	CG6181-PA, ISOFORM A
total genus	49
structure length	131
sequence length	135
chains with identical sequence	B
ec nomenclature
pdb deposition date	2008-07-04

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.220.100	Mainly Alpha	Orthogonal Bundle	Annexin V; domain 1	conserved c-terminal region of ge- 1	2vxgA02

2VXGA 4Q2SA
chains in the Genus database with same CATH superfamily

1QC7A 4C7PA 2HYVA 4FQ0C 4JMOA 4D7QA 1YIIA 2OY9A 1BC3A 4Q2SA 4L5MA 2XO2A 2QEZA 1BCZA 1YJ0A 3LTLA 2IE6A 1Q8DA 1HM6A 2R09A 1BC1A 1AOWA 1PBVA 1C1KA 1XJLA 1UPTB 1BCYA 4C0AA 1M9IA 2XO3A 2ZHIA 3ABOA 1A8AA 1N41A 2K6XA 1DM5A 1S9DE 1A8BA 1R8ME 2H0MA 1N00A 2H0KA 2IE7A 3TW5A 3ABSA 1R8SE 4X9PA 2R0DA 1HVEA 2HSNA 2II2A 1XT0B 1ANWA 4D7RA 1BC9A 4A4PA 1R4AE 3L8NA 1AEIA 1HVFA 1HVGA 1AVHA 2HYUA 3HJLA 3ABRA 3SWVA 3USWA 2RANA 4EVFA 1G5NA 4JMIA 3AJCA 2ZOCA 1LKVX 1MCXA 3AO0A 1HAKA 4KN7X 1XSZA 4JK1X 2IICA 4FHRB 1AIIA 1RE0B 4MDUA 2VXGA 1SAVA 1ALAA 1BCWA 4KN4X 1YCNA 4KMUX 1YGMA 2Q4CA 1N42A 3ANYA 1KU1A 1ANXA 2H0LA 4OIYA 3USYA 1ANNA 1W3WA 1W45A 4EVHA 4MDVA 1AVRA 2ZHJA 1R8QE 1I4AA 4JWLA 3ABQA 1BC0A 3BRXA 1HVDA 4JXHA 4HREA 3SOHB 4Z21A 1AVCA 1W7BA 1BO9A 2HYWA 1AXNA 1DK5A 1N44A
chains in the Genus database with same CATH topology

2VXGA 4Q2SA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2VXG A;  4Q2S A; 
#chains in the Genus database with same CATH topology
 1QC7 A;  4C7P A;  2HYV A;  4FQ0 C;  4JMO A;  4D7Q A;  1YII A;  2OY9 A;  1BC3 A;  4Q2S A;  4L5M A;  2XO2 A;  2QEZ A;  1BCZ A;  1YJ0 A;  3LTL A;  2IE6 A;  1Q8D A;  1HM6 A;  2R09 A;  1BC1 A;  1AOW A;  1PBV A;  1C1K A;  1XJL A;  1UPT B;  1BCY A;  4C0A A;  1M9I A;  2XO3 A;  2ZHI A;  3ABO A;  1A8A A;  1N41 A;  2K6X A;  1DM5 A;  1S9D E;  1A8B A;  1R8M E;  2H0M A;  1N00 A;  2H0K A;  2IE7 A;  3TW5 A;  3ABS A;  1R8S E;  4X9P A;  2R0D A;  1HVE A;  2HSN A;  2II2 A;  1XT0 B;  1ANW A;  4D7R A;  1BC9 A;  4A4P A;  1R4A E;  3L8N A;  1AEI A;  1HVF A;  1HVG A;  1AVH A;  2HYU A;  3HJL A;  3ABR A;  3SWV A;  3USW A;  2RAN A;  4EVF A;  1G5N A;  4JMI A;  3AJC A;  2ZOC A;  1LKV X;  1MCX A;  3AO0 A;  1HAK A;  4KN7 X;  1XSZ A;  4JK1 X;  2IIC A;  4FHR B;  1AII A;  1RE0 B;  4MDU A;  2VXG A;  1SAV A;  1ALA A;  1BCW A;  4KN4 X;  1YCN A;  4KMU X;  1YGM A;  2Q4C A;  1N42 A;  3ANY A;  1KU1 A;  1ANX A;  2H0L A;  4OIY A;  3USY A;  1ANN A;  1W3W A;  1W45 A;  4EVH A;  4MDV A;  1AVR A;  2ZHJ A;  1R8Q E;  1I4A A;  4JWL A;  3ABQ A;  1BC0 A;  3BRX A;  1HVD A;  4JXH A;  4HRE A;  3SOH B;  4Z21 A;  1AVC A;  1W7B A;  1BO9 A;  2HYW A;  1AXN A;  1DK5 A;  1N44 A; 
#chains in the Genus database with same CATH homology
 2VXG A;  4Q2S A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2VXGA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization