2ZOCA

Crystal structure of recombinant human annexin iv
Total Genus 130

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
130
sequence length
319
structure length
319
Chain Sequence
MATKGGTVKAASGFNAMEDAQTLRKAMKGLGTDEDAIISVLAYRNTAQRQEIRTAYKSTIGRDLIDDLKSELSGNFEQVIVGMMTPTVLYDVQELRRAMKGAGTDEGCLIEILASRTPEEIRRISQTYQQQYGRSLEDDIRSDTSFMFQRVLVSLSAGGRDEGNYLDDALVRQDAQDLYEAGEKKWGTDEVKFLTVLCSRNRNHLLHVFDEYKRISQKDIEQSIKSETSGSFEDALLAIVKCMRNKSAYFAEKLYKSMKGLGTDDNTLIRVMVSRAEIDMLDIRAHFKRLYGKSLYSFIKGDTSGDYRKVLLVLCGGDD
5010015020025030030025020015010050
020406080100120Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH18 (280-291)TIV1 (1-4)EMPTYTI2 (275-278)AH3 (46-60)TIV2 (11-14)AH2 (34-42)AH4 (64-71)AH6 (87-99)AH7 (106-115)AH9 (136-143)AH16 (246-258)AH17 (265-275)AH10 (146-156)AH8 (118-132)AH11 (168-181)AH13 (202-216)AH12 (190-199)TI1 (182-185)TIV4 (181-184)AH14 (220-227)TIV5 (185-188)AH15 (230-244)TIV6 (276-279)AH20 (305-315)AH19 (295-302)AH5 (74-84)AH1 (16-27)Updating...
connected with : NaN
molecule tags Metal binding protein, lipid binding protein
source organism Homo sapiens
publication title The comparison of the loop structure of membrane binding sites between human and bovine annexin IV
rcsb
molecule keywords Annexin A4
total genus 130
structure length 319
sequence length 319
chains with identical sequence B
ec nomenclature
pdb deposition date 2008-05-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00191 Annexin Annexin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.220.10 Mainly Alpha Orthogonal Bundle Annexin V; domain 1 Annexin 2zocA02
1.10.220.10 Mainly Alpha Orthogonal Bundle Annexin V; domain 1 Annexin 2zocA01
1.10.220.10 Mainly Alpha Orthogonal Bundle Annexin V; domain 1 Annexin 2zocA04
1.10.220.10 Mainly Alpha Orthogonal Bundle Annexin V; domain 1 Annexin 2zocA03
2Q4CA 1AEIA 1HM6A 1ANWA 1AVHA 1W45A 1XJLA 1AOWA 1ANXA 2ZHJA 1SAVA 4EVHA 1BC0A 1ALAA 1N41A 1HVEA 1YCNA 1ANNA 4X9PA 1M9IA 1BC3A 1DM5A 2ZOCA 2RANA 2HYWA 1AIIA 1W3WA 2H0KA 1AXNA 1BC1A 1N00A 2IE6A 2ZHIA 1W7BA 1N44A 1DK5A 1BCWA 1HAKA 1I4AA 1YIIA 2IE7A 1HVDA 1YJ0A 2XO2A 1N42A 3BRXA 2XO3A 1HVFA 1G5NA 1BCYA 2IICA 4HREA 1A8AA 1AVRA 4MDVA 1A8BA 2H0LA 1HVGA 2HYUA 1MCXA 4EVFA 1AVCA 1BCZA 4MDUA 2HYVA 2II2A 2H0MA 1BO9A
chains in the Genus database with same CATH superfamily
3ABOA 1HM6A 2ZHJA 4KN4X 1AVHA 1W45A 3ANYA 1XSZA 4OIYA 3USYA 1ALAA 1N41A 1HVEA 1S9DE 1ANNA 4A4PA 2RANA 2HYWA 1BC1A 3TW5A 1I4AA 2IE7A 1YIIA 1HVDA 2VXGA 2R0DA 1YJ0A 3BRXA 2XO3A 1QC7A 1A8BA 4C0AA 1BCZA 2II2A 3ABSA 1Q8DA 2OY9A 2Q4CA 1AEIA 1BO9A 1ANWA 1ANXA 1SAVA 1BC0A 3L8NA 4X9PA 4JMIA 1BC3A 1RE0B 3USWA 1KU1A 1AIIA 2HSNA 4JXHA 1AXNA 1N00A 2IE6A 2ZHIA 1N44A 4JK1X 4Z21A 1R8ME 3AJCA 1BCYA 1R8SE 2HYUA 1HVGA 1MCXA 1AVCA 2HYVA 3SOHB 4FQ0C 4JMOA 1XT0B 3HJLA 1R4AE 2ZOCA 4FHRB 1R8QE 2H0KA 4C7PA 1W7BA 4D7RA 1BCWA 1HAKA 1C1KA 3AO0A 4KMUX 2XO2A 1BC9A 3ABQA 1A8AA 2H0LA 4EVFA 1PBVA 4L5MA 1XJLA 1AOWA 3SWVA 1YGMA 4EVHA 1YCNA 4Q2SA 1M9IA 1DM5A 1W3WA 3LTLA 4D7QA 2K6XA 2R09A 1DK5A 4JWLA 1UPTB 1N42A 4KN7X 1LKVX 1HVFA 1G5NA 2IICA 4HREA 1AVRA 3ABRA 4MDVA 4MDUA 2H0MA 2QEZA
chains in the Genus database with same CATH topology
2Q4CA 1AEIA 1HM6A 1ANWA 1AVHA 1W45A 1XJLA 1AOWA 1ANXA 2ZHJA 1SAVA 4EVHA 1BC0A 1ALAA 1N41A 1HVEA 1YCNA 1ANNA 4X9PA 1M9IA 1BC3A 1DM5A 2ZOCA 2RANA 2HYWA 1AIIA 1W3WA 2H0KA 1AXNA 1BC1A 1N00A 2IE6A 2ZHIA 1W7BA 1N44A 1DK5A 1BCWA 1HAKA 1I4AA 1YIIA 2IE7A 1HVDA 1YJ0A 2XO2A 1N42A 3BRXA 2XO3A 1HVFA 1G5NA 1BCYA 2IICA 4HREA 1A8AA 1AVRA 4MDVA 1A8BA 2H0LA 1HVGA 2HYUA 1MCXA 4EVFA 1AVCA 1BCZA 4MDUA 2HYVA 2II2A 2H0MA 1BO9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2Q4C A;  1AEI A;  1HM6 A;  1ANW A;  1AVH A;  1W45 A;  1XJL A;  1AOW A;  1ANX A;  2ZHJ A;  1SAV A;  4EVH A;  1BC0 A;  1ALA A;  1N41 A;  1HVE A;  1YCN A;  1ANN A;  4X9P A;  1M9I A;  1BC3 A;  1DM5 A;  2ZOC A;  2RAN A;  2HYW A;  1AII A;  1W3W A;  2H0K A;  1AXN A;  1BC1 A;  1N00 A;  2IE6 A;  2ZHI A;  1W7B A;  1N44 A;  1DK5 A;  1BCW A;  1HAK A;  1I4A A;  1YII A;  2IE7 A;  1HVD A;  1YJ0 A;  2XO2 A;  1N42 A;  3BRX A;  2XO3 A;  1HVF A;  1G5N A;  1BCY A;  2IIC A;  4HRE A;  1A8A A;  1AVR A;  4MDV A;  1A8B A;  2H0L A;  1HVG A;  2HYU A;  1MCX A;  4EVF A;  1AVC A;  1BCZ A;  4MDU A;  2HYV A;  2II2 A;  2H0M A;  1BO9 A; 
#chains in the Genus database with same CATH topology
 3ABO A;  1HM6 A;  2ZHJ A;  4KN4 X;  1AVH A;  1W45 A;  3ANY A;  1XSZ A;  4OIY A;  3USY A;  1ALA A;  1N41 A;  1HVE A;  1S9D E;  1ANN A;  4A4P A;  2RAN A;  2HYW A;  1BC1 A;  3TW5 A;  1I4A A;  2IE7 A;  1YII A;  1HVD A;  2VXG A;  2R0D A;  1YJ0 A;  3BRX A;  2XO3 A;  1QC7 A;  1A8B A;  4C0A A;  1BCZ A;  2II2 A;  3ABS A;  1Q8D A;  2OY9 A;  2Q4C A;  1AEI A;  1BO9 A;  1ANW A;  1ANX A;  1SAV A;  1BC0 A;  3L8N A;  4X9P A;  4JMI A;  1BC3 A;  1RE0 B;  3USW A;  1KU1 A;  1AII A;  2HSN A;  4JXH A;  1AXN A;  1N00 A;  2IE6 A;  2ZHI A;  1N44 A;  4JK1 X;  4Z21 A;  1R8M E;  3AJC A;  1BCY A;  1R8S E;  2HYU A;  1HVG A;  1MCX A;  1AVC A;  2HYV A;  3SOH B;  4FQ0 C;  4JMO A;  1XT0 B;  3HJL A;  1R4A E;  2ZOC A;  4FHR B;  1R8Q E;  2H0K A;  4C7P A;  1W7B A;  4D7R A;  1BCW A;  1HAK A;  1C1K A;  3AO0 A;  4KMU X;  2XO2 A;  1BC9 A;  3ABQ A;  1A8A A;  2H0L A;  4EVF A;  1PBV A;  4L5M A;  1XJL A;  1AOW A;  3SWV A;  1YGM A;  4EVH A;  1YCN A;  4Q2S A;  1M9I A;  1DM5 A;  1W3W A;  3LTL A;  4D7Q A;  2K6X A;  2R09 A;  1DK5 A;  4JWL A;  1UPT B;  1N42 A;  4KN7 X;  1LKV X;  1HVF A;  1G5N A;  2IIC A;  4HRE A;  1AVR A;  3ABR A;  4MDV A;  4MDU A;  2H0M A;  2QEZ A; 
#chains in the Genus database with same CATH homology
 2Q4C A;  1AEI A;  1HM6 A;  1ANW A;  1AVH A;  1W45 A;  1XJL A;  1AOW A;  1ANX A;  2ZHJ A;  1SAV A;  4EVH A;  1BC0 A;  1ALA A;  1N41 A;  1HVE A;  1YCN A;  1ANN A;  4X9P A;  1M9I A;  1BC3 A;  1DM5 A;  2ZOC A;  2RAN A;  2HYW A;  1AII A;  1W3W A;  2H0K A;  1AXN A;  1BC1 A;  1N00 A;  2IE6 A;  2ZHI A;  1W7B A;  1N44 A;  1DK5 A;  1BCW A;  1HAK A;  1I4A A;  1YII A;  2IE7 A;  1HVD A;  1YJ0 A;  2XO2 A;  1N42 A;  3BRX A;  2XO3 A;  1HVF A;  1G5N A;  1BCY A;  2IIC A;  4HRE A;  1A8A A;  1AVR A;  4MDV A;  1A8B A;  2H0L A;  1HVG A;  2HYU A;  1MCX A;  4EVF A;  1AVC A;  1BCZ A;  4MDU A;  2HYV A;  2II2 A;  2H0M A;  1BO9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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