2AGY | Genus

Total Genus 27

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	27
Knots found	KnotProt 2.0: K
sequence length	109
structure length	108
Chain Sequence	EVNSCDYWRHCAVDGFLCSCCGGTTTTCPPGSTPSPISIGTCHNPHDGKDYLISYHDCCGKTACGRCQCNTQTRERPGYEFFLHNDVNWCMANENSTFHCTTSVLVGL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 108 atoms

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108 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Atomic description of an enzyme reaction dominated by proton tunneling pubmed doi rcsb
molecule keywords	Aromatic amine dehydrogenase
molecule tags	Oxidoreductase
total genus	27
structure length	108
sequence length	109
chains with identical sequence	H
other databases	KnotProt 2.0: K
ec nomenclature	ec 1.4.9.2: Aralkylamine dehydrogenase (azurin).
pdb deposition date	2005-07-27

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
D	PF02975	Me-amine-dh_L	Methylamine dehydrogenase, L chain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.60.30.10	Mainly Beta	Sandwich	Electron Transport Ethylamine Dehydrogenase	Methylamine/Aralkylamine dehydrogenase light chain	2agyD00

2HJBD 3SVWC 3PXWC 2IAAB 2AH0D 2H3XB 2HKRD 2IUQD 3SJLC 3RN1C 2AH1D 3RN0C 2HJ4D 4FANC 2GC4B 4L1QC 2BBKL 4FA5C 3SWSC 2J56L 2MADL 4O1QC 3SLEC 2OJYD 2Q7QD 2IURD 2AGZD 2I0TD 1MG3B 3RMZC 2AGWD 2H47B 2MTAL 2AGLD 4L3HC 2HXCD 4FA9C 2HKMD 3PXSC 2I0RD 2J55L 2AGXD 3ORVC 2GC7B 2AGYD 1MAEL 3SXTC 4K3IC 2IUVD 2I0SD 2IUPD 1MAFL 3L4OC 3PXTC 3L4MC 3RLMC 2OIZD 2J57K 2OK4D 4FA1C 4Y5RC 4FB1C 3C75L 4FA4C 1MG2B 4L3GC 4FAVC 2OK6D 1MDAL
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 2HJB D;  3SVW C;  3PXW C;  2IAA B;  2AH0 D;  2H3X B;  2HKR D;  2IUQ D;  3SJL C;  3RN1 C;  2AH1 D;  3RN0 C;  2HJ4 D;  4FAN C;  2GC4 B;  4L1Q C;  2BBK L;  4FA5 C;  3SWS C;  2J56 L;  2MAD L;  4O1Q C;  3SLE C;  2OJY D;  2Q7Q D;  2IUR D;  2AGZ D;  2I0T D;  1MG3 B;  3RMZ C;  2AGW D;  2H47 B;  2MTA L;  2AGL D;  4L3H C;  2HXC D;  4FA9 C;  2HKM D;  3PXS C;  2I0R D;  2J55 L;  2AGX D;  3ORV C;  2GC7 B;  2AGY D;  1MAE L;  3SXT C;  4K3I C;  2IUV D;  2I0S D;  2IUP D;  1MAF L;  3L4O C;  3PXT C;  3L4M C;  3RLM C;  2OIZ D;  2J57 K;  2OK4 D;  4FA1 C;  4Y5R C;  4FB1 C;  3C75 L;  4FA4 C;  1MG2 B;  4L3G C;  4FAV C;  2OK6 D;  1MDA L; 
#chains in the Genus database with same CATH topology
 2HJB D;  3SVW C;  3PXW C;  2IAA B;  2AH0 D;  2H3X B;  2HKR D;  2IUQ D;  3SJL C;  3RN1 C;  2AH1 D;  3RN0 C;  2HJ4 D;  4FAN C;  2GC4 B;  4L1Q C;  2BBK L;  4FA5 C;  3SWS C;  2J56 L;  2MAD L;  4O1Q C;  3SLE C;  2OJY D;  2Q7Q D;  2IUR D;  2AGZ D;  2I0T D;  1MG3 B;  3RMZ C;  2AGW D;  2H47 B;  2MTA L;  2AGL D;  4L3H C;  2HXC D;  4FA9 C;  2HKM D;  3PXS C;  2I0R D;  2J55 L;  2AGX D;  3ORV C;  2GC7 B;  2AGY D;  1MAE L;  3SXT C;  4K3I C;  2IUV D;  2I0S D;  2IUP D;  1MAF L;  3L4O C;  3PXT C;  3L4M C;  3RLM C;  2OIZ D;  2J57 K;  2OK4 D;  4FA1 C;  4Y5R C;  4FB1 C;  3C75 L;  4FA4 C;  1MG2 B;  4L3G C;  4FAV C;  2OK6 D;  1MDA L; 
#chains in the Genus database with same CATH homology
 2HJB D;  3SVW C;  3PXW C;  2IAA B;  2AH0 D;  2H3X B;  2HKR D;  2IUQ D;  3SJL C;  3RN1 C;  2AH1 D;  3RN0 C;  2HJ4 D;  4FAN C;  2GC4 B;  4L1Q C;  2BBK L;  4FA5 C;  3SWS C;  2J56 L;  2MAD L;  4O1Q C;  3SLE C;  2OJY D;  2Q7Q D;  2IUR D;  2AGZ D;  2I0T D;  1MG3 B;  3RMZ C;  2AGW D;  2H47 B;  2MTA L;  2AGL D;  4L3H C;  2HXC D;  4FA9 C;  2HKM D;  3PXS C;  2I0R D;  2J55 L;  2AGX D;  3ORV C;  2GC7 B;  2AGY D;  1MAE L;  3SXT C;  4K3I C;  2IUV D;  2I0S D;  2IUP D;  1MAF L;  3L4O C;  3PXT C;  3L4M C;  3RLM C;  2OIZ D;  2J57 K;  2OK4 D;  4FA1 C;  4Y5R C;  4FB1 C;  3C75 L;  4FA4 C;  1MG2 B;  4L3G C;  4FAV C;  2OK6 D;  1MDA L;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2AGYD

Total Genus

Knots found

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations