2BBKL

Crystal structure of the quinoprotein methylamine dehydrogenase from paracoccus denitrificans at 1.75 angstroms
Total Genus 31
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
31
Knots found
sequence length
125
structure length
124
Chain Sequence
TDPRAKWVPQDNDIQACDYWRHCSIDGNICDCSGGSLTNCPPGTKLATASVASCYNPTDGQSYLIAYRDCCGYNVSGRCPCLNTEGELPVYRPEFANDIIWCFGAEDDAMTYHCTISPIVGKAS
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Electron transport
source organism Paracoccus denitrificans
publication title Refined crystal structure of methylamine dehydrogenase from Paracoccus denitrificans at 1.75 A resolution.
pubmed doi rcsb
molecule keywords METHYLAMINE DEHYDROGENASE (HEAVY SUBUNIT)
total genus 31
structure length 124
sequence length 125
chains with identical sequence M
other databases KnotProt 2.0: K
ec nomenclature ec 1.4.9.1: Methylamine dehydrogenase (amicyanin).
pdb deposition date 1993-12-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
L PF02975 Me-amine-dh_L Methylamine dehydrogenase, L chain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.30.10 Mainly Beta Sandwich Electron Transport Ethylamine Dehydrogenase Methylamine/Aralkylamine dehydrogenase light chain 2bbkL00
2GC7B 3L4MC 4FAVC 2H3XB 2H47B 2HKRD 3SWSC 2AH1D 2BBKL 4L3GC 3RN0C 2OK6D 2OIZD 2AGLD 2AGZD 2J55L 2HXCD 2J57K 4FA5C 4L1QC 1MAFL 2HJ4D 2HKMD 4FA4C 2OJYD 4L3HC 4Y5RC 2IAAB 2MADL 4O1QC 1MG3B 3PXSC 2IUPD 2AGWD 2IUVD 2AGYD 1MDAL 3C75L 3RMZC 2MTAL 4FANC 4FA1C 2IUQD 3SVWC 3L4OC 2AH0D 3SLEC 2I0SD 2GC4B 3ORVC 1MAEL 2OK4D 2AGXD 3PXWC 4K3IC 2J56L 2I0TD 2HJBD 3PXTC 3RN1C 4FA9C 1MG2B 4FB1C 3RLMC 2I0RD 2Q7QD 2IURD 3SXTC 3SJLC
chains in the Genus database with same CATH superfamily
2GC7B 3L4MC 4FAVC 2H3XB 2H47B 2HKRD 3SWSC 2AH1D 2BBKL 4L3GC 3RN0C 2OK6D 2OIZD 2AGLD 2AGZD 2J55L 2HXCD 2J57K 4FA5C 4L1QC 1MAFL 2HJ4D 2HKMD 4FA4C 2OJYD 4L3HC 4Y5RC 2IAAB 2MADL 4O1QC 1MG3B 3PXSC 2IUPD 2AGWD 2IUVD 2AGYD 1MDAL 3C75L 3RMZC 2MTAL 4FANC 4FA1C 2IUQD 3SVWC 3L4OC 2AH0D 3SLEC 2I0SD 2GC4B 3ORVC 1MAEL 2OK4D 2AGXD 3PXWC 4K3IC 2J56L 2I0TD 2HJBD 3PXTC 3RN1C 4FA9C 1MG2B 4FB1C 3RLMC 2I0RD 2Q7QD 2IURD 3SXTC 3SJLC
chains in the Genus database with same CATH topology
2GC7B 3L4MC 4FAVC 2H3XB 2H47B 2HKRD 3SWSC 2AH1D 2BBKL 4L3GC 3RN0C 2OK6D 2OIZD 2AGLD 2AGZD 2J55L 2HXCD 2J57K 4FA5C 4L1QC 1MAFL 2HJ4D 2HKMD 4FA4C 2OJYD 4L3HC 4Y5RC 2IAAB 2MADL 4O1QC 1MG3B 3PXSC 2IUPD 2AGWD 2IUVD 2AGYD 1MDAL 3C75L 3RMZC 2MTAL 4FANC 4FA1C 2IUQD 3SVWC 3L4OC 2AH0D 3SLEC 2I0SD 2GC4B 3ORVC 1MAEL 2OK4D 2AGXD 3PXWC 4K3IC 2J56L 2I0TD 2HJBD 3PXTC 3RN1C 4FA9C 1MG2B 4FB1C 3RLMC 2I0RD 2Q7QD 2IURD 3SXTC 3SJLC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2GC7 B;  3L4M C;  4FAV C;  2H3X B;  2H47 B;  2HKR D;  3SWS C;  2AH1 D;  2BBK L;  4L3G C;  3RN0 C;  2OK6 D;  2OIZ D;  2AGL D;  2AGZ D;  2J55 L;  2HXC D;  2J57 K;  4FA5 C;  4L1Q C;  1MAF L;  2HJ4 D;  2HKM D;  4FA4 C;  2OJY D;  4L3H C;  4Y5R C;  2IAA B;  2MAD L;  4O1Q C;  1MG3 B;  3PXS C;  2IUP D;  2AGW D;  2IUV D;  2AGY D;  1MDA L;  3C75 L;  3RMZ C;  2MTA L;  4FAN C;  4FA1 C;  2IUQ D;  3SVW C;  3L4O C;  2AH0 D;  3SLE C;  2I0S D;  2GC4 B;  3ORV C;  1MAE L;  2OK4 D;  2AGX D;  3PXW C;  4K3I C;  2J56 L;  2I0T D;  2HJB D;  3PXT C;  3RN1 C;  4FA9 C;  1MG2 B;  4FB1 C;  3RLM C;  2I0R D;  2Q7Q D;  2IUR D;  3SXT C;  3SJL C; 
#chains in the Genus database with same CATH topology
 2GC7 B;  3L4M C;  4FAV C;  2H3X B;  2H47 B;  2HKR D;  3SWS C;  2AH1 D;  2BBK L;  4L3G C;  3RN0 C;  2OK6 D;  2OIZ D;  2AGL D;  2AGZ D;  2J55 L;  2HXC D;  2J57 K;  4FA5 C;  4L1Q C;  1MAF L;  2HJ4 D;  2HKM D;  4FA4 C;  2OJY D;  4L3H C;  4Y5R C;  2IAA B;  2MAD L;  4O1Q C;  1MG3 B;  3PXS C;  2IUP D;  2AGW D;  2IUV D;  2AGY D;  1MDA L;  3C75 L;  3RMZ C;  2MTA L;  4FAN C;  4FA1 C;  2IUQ D;  3SVW C;  3L4O C;  2AH0 D;  3SLE C;  2I0S D;  2GC4 B;  3ORV C;  1MAE L;  2OK4 D;  2AGX D;  3PXW C;  4K3I C;  2J56 L;  2I0T D;  2HJB D;  3PXT C;  3RN1 C;  4FA9 C;  1MG2 B;  4FB1 C;  3RLM C;  2I0R D;  2Q7Q D;  2IUR D;  3SXT C;  3SJL C; 
#chains in the Genus database with same CATH homology
 2GC7 B;  3L4M C;  4FAV C;  2H3X B;  2H47 B;  2HKR D;  3SWS C;  2AH1 D;  2BBK L;  4L3G C;  3RN0 C;  2OK6 D;  2OIZ D;  2AGL D;  2AGZ D;  2J55 L;  2HXC D;  2J57 K;  4FA5 C;  4L1Q C;  1MAF L;  2HJ4 D;  2HKM D;  4FA4 C;  2OJY D;  4L3H C;  4Y5R C;  2IAA B;  2MAD L;  4O1Q C;  1MG3 B;  3PXS C;  2IUP D;  2AGW D;  2IUV D;  2AGY D;  1MDA L;  3C75 L;  3RMZ C;  2MTA L;  4FAN C;  4FA1 C;  2IUQ D;  3SVW C;  3L4O C;  2AH0 D;  3SLE C;  2I0S D;  2GC4 B;  3ORV C;  1MAE L;  2OK4 D;  2AGX D;  3PXW C;  4K3I C;  2J56 L;  2I0T D;  2HJB D;  3PXT C;  3RN1 C;  4FA9 C;  1MG2 B;  4FB1 C;  3RLM C;  2I0R D;  2Q7Q D;  2IUR D;  3SXT C;  3SJL C; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...