2H47B

Crystal structure of an electron transfer complex between aromatic amine dephydrogenase and azurin from alcaligenes faecalis (form 1)
Total Genus 30
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
Knots found
sequence length
124
structure length
123
Chain Sequence
HISLNPDLANEDEVNSCDYWRHCAVDGFLCSCCGGTTTTCPPGSTPSPISIGTCHNPHDGKDYLISYHDCCGKTACGRCQCNTQTRERPGYEFFLHNDVNWCMANENSTFHCTTSVLVGLAKN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal Structure of an Electron Transfer Complex between Aromatic Amine Dehydrogenase and Azurin from Alcaligenes faecalis.
pubmed doi rcsb
molecule tags Oxidoreductase/electron transport
molecule keywords Aromatic Amine Dehydrogenase
total genus 30
structure length 123
sequence length 124
chains with identical sequence E, G, I
other databases KnotProt 2.0: K
ec nomenclature ec 1.4.9.2: Aralkylamine dehydrogenase (azurin).
pdb deposition date 2006-05-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF02975 Me-amine-dh_L Methylamine dehydrogenase, L chain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.30.10 Mainly Beta Sandwich Electron Transport Ethylamine Dehydrogenase Methylamine/Aralkylamine dehydrogenase light chain 2h47B00
3SJLC 2AGWD 2HKRD 2OK6D 2IUVD 2J56L 3ORVC 3L4MC 2BBKL 3RLMC 2AH1D 1MAEL 2GC4B 4L3HC 2HJBD 2IUQD 4FA5C 3RN0C 3RN1C 4FA1C 2I0RD 2MTAL 1MG2B 2Q7QD 3SXTC 3PXTC 2HJ4D 2AGLD 2J55L 4L1QC 4FAVC 3SWSC 1MAFL 3RMZC 2IURD 2AH0D 2MADL 2AGYD 2OJYD 2IAAB 2IUPD 2AGXD 2GC7B 2J57K 3L4OC 3PXSC 3C75L 2HKMD 4K3IC 2HXCD 3PXWC 2OK4D 2I0SD 2AGZD 4FANC 3SLEC 1MG3B 1MDAL 2I0TD 4Y5RC 4FA4C 4FA9C 2H47B 2OIZD 4O1QC 4FB1C 3SVWC 4L3GC 2H3XB
chains in the Genus database with same CATH superfamily
3SJLC 2AGWD 2HKRD 2OK6D 2IUVD 2J56L 3ORVC 3L4MC 2BBKL 3RLMC 2AH1D 1MAEL 2GC4B 4L3HC 2HJBD 2IUQD 4FA5C 3RN0C 3RN1C 4FA1C 2I0RD 2MTAL 1MG2B 2Q7QD 3SXTC 3PXTC 2HJ4D 2AGLD 2J55L 4L1QC 4FAVC 3SWSC 1MAFL 3RMZC 2IURD 2AH0D 2MADL 2AGYD 2OJYD 2IAAB 2IUPD 2AGXD 2GC7B 2J57K 3L4OC 3PXSC 3C75L 2HKMD 4K3IC 2HXCD 3PXWC 2OK4D 2I0SD 2AGZD 4FANC 3SLEC 1MG3B 1MDAL 2I0TD 4Y5RC 4FA4C 4FA9C 2H47B 2OIZD 4O1QC 4FB1C 3SVWC 4L3GC 2H3XB
chains in the Genus database with same CATH topology
3SJLC 2AGWD 2HKRD 2OK6D 2IUVD 2J56L 3ORVC 3L4MC 2BBKL 3RLMC 2AH1D 1MAEL 2GC4B 4L3HC 2HJBD 2IUQD 4FA5C 3RN0C 3RN1C 4FA1C 2I0RD 2MTAL 1MG2B 2Q7QD 3SXTC 3PXTC 2HJ4D 2AGLD 2J55L 4L1QC 4FAVC 3SWSC 1MAFL 3RMZC 2IURD 2AH0D 2MADL 2AGYD 2OJYD 2IAAB 2IUPD 2AGXD 2GC7B 2J57K 3L4OC 3PXSC 3C75L 2HKMD 4K3IC 2HXCD 3PXWC 2OK4D 2I0SD 2AGZD 4FANC 3SLEC 1MG3B 1MDAL 2I0TD 4Y5RC 4FA4C 4FA9C 2H47B 2OIZD 4O1QC 4FB1C 3SVWC 4L3GC 2H3XB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3SJL C;  2AGW D;  2HKR D;  2OK6 D;  2IUV D;  2J56 L;  3ORV C;  3L4M C;  2BBK L;  3RLM C;  2AH1 D;  1MAE L;  2GC4 B;  4L3H C;  2HJB D;  2IUQ D;  4FA5 C;  3RN0 C;  3RN1 C;  4FA1 C;  2I0R D;  2MTA L;  1MG2 B;  2Q7Q D;  3SXT C;  3PXT C;  2HJ4 D;  2AGL D;  2J55 L;  4L1Q C;  4FAV C;  3SWS C;  1MAF L;  3RMZ C;  2IUR D;  2AH0 D;  2MAD L;  2AGY D;  2OJY D;  2IAA B;  2IUP D;  2AGX D;  2GC7 B;  2J57 K;  3L4O C;  3PXS C;  3C75 L;  2HKM D;  4K3I C;  2HXC D;  3PXW C;  2OK4 D;  2I0S D;  2AGZ D;  4FAN C;  3SLE C;  1MG3 B;  1MDA L;  2I0T D;  4Y5R C;  4FA4 C;  4FA9 C;  2H47 B;  2OIZ D;  4O1Q C;  4FB1 C;  3SVW C;  4L3G C;  2H3X B; 
#chains in the Genus database with same CATH topology
 3SJL C;  2AGW D;  2HKR D;  2OK6 D;  2IUV D;  2J56 L;  3ORV C;  3L4M C;  2BBK L;  3RLM C;  2AH1 D;  1MAE L;  2GC4 B;  4L3H C;  2HJB D;  2IUQ D;  4FA5 C;  3RN0 C;  3RN1 C;  4FA1 C;  2I0R D;  2MTA L;  1MG2 B;  2Q7Q D;  3SXT C;  3PXT C;  2HJ4 D;  2AGL D;  2J55 L;  4L1Q C;  4FAV C;  3SWS C;  1MAF L;  3RMZ C;  2IUR D;  2AH0 D;  2MAD L;  2AGY D;  2OJY D;  2IAA B;  2IUP D;  2AGX D;  2GC7 B;  2J57 K;  3L4O C;  3PXS C;  3C75 L;  2HKM D;  4K3I C;  2HXC D;  3PXW C;  2OK4 D;  2I0S D;  2AGZ D;  4FAN C;  3SLE C;  1MG3 B;  1MDA L;  2I0T D;  4Y5R C;  4FA4 C;  4FA9 C;  2H47 B;  2OIZ D;  4O1Q C;  4FB1 C;  3SVW C;  4L3G C;  2H3X B; 
#chains in the Genus database with same CATH homology
 3SJL C;  2AGW D;  2HKR D;  2OK6 D;  2IUV D;  2J56 L;  3ORV C;  3L4M C;  2BBK L;  3RLM C;  2AH1 D;  1MAE L;  2GC4 B;  4L3H C;  2HJB D;  2IUQ D;  4FA5 C;  3RN0 C;  3RN1 C;  4FA1 C;  2I0R D;  2MTA L;  1MG2 B;  2Q7Q D;  3SXT C;  3PXT C;  2HJ4 D;  2AGL D;  2J55 L;  4L1Q C;  4FAV C;  3SWS C;  1MAF L;  3RMZ C;  2IUR D;  2AH0 D;  2MAD L;  2AGY D;  2OJY D;  2IAA B;  2IUP D;  2AGX D;  2GC7 B;  2J57 K;  3L4O C;  3PXS C;  3C75 L;  2HKM D;  4K3I C;  2HXC D;  3PXW C;  2OK4 D;  2I0S D;  2AGZ D;  4FAN C;  3SLE C;  1MG3 B;  1MDA L;  2I0T D;  4Y5R C;  4FA4 C;  4FA9 C;  2H47 B;  2OIZ D;  4O1Q C;  4FB1 C;  3SVW C;  4L3G C;  2H3X B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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