2HJBD

Crystal structure of alcaligenes faecalis aadh in complex with p-methoxybenzylamine
Total Genus 25
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
25
Knots found
sequence length
110
structure length
109
Chain Sequence
EVNSCDYWRHCAVDGFLCSCCGGTTTTCPPGSTPSPISIGTCHNPHDGKDYLISYHDCCGKTACGRCQCNTQTRERPGYEFFLHNDVNWCMANENSTFHCTTSVLVGLA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
publication title Isotope effects reveal that para-substituted benzylamines are poor reactivity probes of the quinoprotein mechanism for aromatic amine dehydrogenase.
pubmed doi rcsb
molecule keywords Aromatic amine dehydrogenase
total genus 25
structure length 109
sequence length 110
chains with identical sequence H
other databases KnotProt 2.0: K
ec nomenclature ec 1.4.9.2: Aralkylamine dehydrogenase (azurin).
pdb deposition date 2006-06-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF02975 Me-amine-dh_L Methylamine dehydrogenase, L chain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.30.10 Mainly Beta Sandwich Electron Transport Ethylamine Dehydrogenase Methylamine/Aralkylamine dehydrogenase light chain 2hjbD00
2BBKL 2AH1D 2I0SD 2J55L 1MG2B 1MAEL 4FAVC 3L4MC 4FA9C 2AH0D 3PXSC 3SVWC 2IUVD 2H47B 2IUPD 2HXCD 3C75L 4FA4C 3RMZC 4O1QC 3SLEC 2HJBD 2Q7QD 2AGYD 2IUQD 2MADL 4L3GC 2J56L 1MDAL 2HJ4D 2IURD 2AGXD 2I0TD 3L4OC 2AGZD 2MTAL 4K3IC 3RN0C 2OK6D 2HKRD 2IAAB 4FA1C 2OK4D 4FANC 2AGWD 2GC4B 2OJYD 4FB1C 1MG3B 2I0RD 2OIZD 1MAFL 4L1QC 3RLMC 3ORVC 3PXWC 2HKMD 2J57K 4FA5C 2AGLD 4L3HC 3SJLC 3SWSC 3PXTC 3SXTC 2GC7B 2H3XB 3RN1C 4Y5RC
chains in the Genus database with same CATH superfamily
2BBKL 2AH1D 2I0SD 2J55L 1MG2B 1MAEL 4FAVC 3L4MC 4FA9C 2AH0D 3PXSC 3SVWC 2IUVD 2H47B 2IUPD 2HXCD 3C75L 4FA4C 3RMZC 4O1QC 3SLEC 2HJBD 2Q7QD 2AGYD 2IUQD 2MADL 4L3GC 2J56L 1MDAL 2HJ4D 2IURD 2AGXD 2I0TD 3L4OC 2AGZD 2MTAL 4K3IC 3RN0C 2OK6D 2HKRD 2IAAB 4FA1C 2OK4D 4FANC 2AGWD 2GC4B 2OJYD 4FB1C 1MG3B 2I0RD 2OIZD 1MAFL 4L1QC 3RLMC 3ORVC 3PXWC 2HKMD 2J57K 4FA5C 2AGLD 4L3HC 3SJLC 3SWSC 3PXTC 3SXTC 2GC7B 2H3XB 3RN1C 4Y5RC
chains in the Genus database with same CATH topology
2BBKL 2AH1D 2I0SD 2J55L 1MG2B 1MAEL 4FAVC 3L4MC 4FA9C 2AH0D 3PXSC 3SVWC 2IUVD 2H47B 2IUPD 2HXCD 3C75L 4FA4C 3RMZC 4O1QC 3SLEC 2HJBD 2Q7QD 2AGYD 2IUQD 2MADL 4L3GC 2J56L 1MDAL 2HJ4D 2IURD 2AGXD 2I0TD 3L4OC 2AGZD 2MTAL 4K3IC 3RN0C 2OK6D 2HKRD 2IAAB 4FA1C 2OK4D 4FANC 2AGWD 2GC4B 2OJYD 4FB1C 1MG3B 2I0RD 2OIZD 1MAFL 4L1QC 3RLMC 3ORVC 3PXWC 2HKMD 2J57K 4FA5C 2AGLD 4L3HC 3SJLC 3SWSC 3PXTC 3SXTC 2GC7B 2H3XB 3RN1C 4Y5RC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2BBK L;  2AH1 D;  2I0S D;  2J55 L;  1MG2 B;  1MAE L;  4FAV C;  3L4M C;  4FA9 C;  2AH0 D;  3PXS C;  3SVW C;  2IUV D;  2H47 B;  2IUP D;  2HXC D;  3C75 L;  4FA4 C;  3RMZ C;  4O1Q C;  3SLE C;  2HJB D;  2Q7Q D;  2AGY D;  2IUQ D;  2MAD L;  4L3G C;  2J56 L;  1MDA L;  2HJ4 D;  2IUR D;  2AGX D;  2I0T D;  3L4O C;  2AGZ D;  2MTA L;  4K3I C;  3RN0 C;  2OK6 D;  2HKR D;  2IAA B;  4FA1 C;  2OK4 D;  4FAN C;  2AGW D;  2GC4 B;  2OJY D;  4FB1 C;  1MG3 B;  2I0R D;  2OIZ D;  1MAF L;  4L1Q C;  3RLM C;  3ORV C;  3PXW C;  2HKM D;  2J57 K;  4FA5 C;  2AGL D;  4L3H C;  3SJL C;  3SWS C;  3PXT C;  3SXT C;  2GC7 B;  2H3X B;  3RN1 C;  4Y5R C; 
#chains in the Genus database with same CATH topology
 2BBK L;  2AH1 D;  2I0S D;  2J55 L;  1MG2 B;  1MAE L;  4FAV C;  3L4M C;  4FA9 C;  2AH0 D;  3PXS C;  3SVW C;  2IUV D;  2H47 B;  2IUP D;  2HXC D;  3C75 L;  4FA4 C;  3RMZ C;  4O1Q C;  3SLE C;  2HJB D;  2Q7Q D;  2AGY D;  2IUQ D;  2MAD L;  4L3G C;  2J56 L;  1MDA L;  2HJ4 D;  2IUR D;  2AGX D;  2I0T D;  3L4O C;  2AGZ D;  2MTA L;  4K3I C;  3RN0 C;  2OK6 D;  2HKR D;  2IAA B;  4FA1 C;  2OK4 D;  4FAN C;  2AGW D;  2GC4 B;  2OJY D;  4FB1 C;  1MG3 B;  2I0R D;  2OIZ D;  1MAF L;  4L1Q C;  3RLM C;  3ORV C;  3PXW C;  2HKM D;  2J57 K;  4FA5 C;  2AGL D;  4L3H C;  3SJL C;  3SWS C;  3PXT C;  3SXT C;  2GC7 B;  2H3X B;  3RN1 C;  4Y5R C; 
#chains in the Genus database with same CATH homology
 2BBK L;  2AH1 D;  2I0S D;  2J55 L;  1MG2 B;  1MAE L;  4FAV C;  3L4M C;  4FA9 C;  2AH0 D;  3PXS C;  3SVW C;  2IUV D;  2H47 B;  2IUP D;  2HXC D;  3C75 L;  4FA4 C;  3RMZ C;  4O1Q C;  3SLE C;  2HJB D;  2Q7Q D;  2AGY D;  2IUQ D;  2MAD L;  4L3G C;  2J56 L;  1MDA L;  2HJ4 D;  2IUR D;  2AGX D;  2I0T D;  3L4O C;  2AGZ D;  2MTA L;  4K3I C;  3RN0 C;  2OK6 D;  2HKR D;  2IAA B;  4FA1 C;  2OK4 D;  4FAN C;  2AGW D;  2GC4 B;  2OJY D;  4FB1 C;  1MG3 B;  2I0R D;  2OIZ D;  1MAF L;  4L1Q C;  3RLM C;  3ORV C;  3PXW C;  2HKM D;  2J57 K;  4FA5 C;  2AGL D;  4L3H C;  3SJL C;  3SWS C;  3PXT C;  3SXT C;  2GC7 B;  2H3X B;  3RN1 C;  4Y5R C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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