2HJBD

Crystal structure of alcaligenes faecalis aadh in complex with p-methoxybenzylamine
Total Genus 25
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
25
Knots found
sequence length
110
structure length
109
Chain Sequence
EVNSCDYWRHCAVDGFLCSCCGGTTTTCPPGSTPSPISIGTCHNPHDGKDYLISYHDCCGKTACGRCQCNTQTRERPGYEFFLHNDVNWCMANENSTFHCTTSVLVGLA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
publication title Isotope effects reveal that para-substituted benzylamines are poor reactivity probes of the quinoprotein mechanism for aromatic amine dehydrogenase.
pubmed doi rcsb
molecule keywords Aromatic amine dehydrogenase
total genus 25
structure length 109
sequence length 110
chains with identical sequence H
other databases KnotProt 2.0: K
ec nomenclature ec 1.4.9.2: Aralkylamine dehydrogenase (azurin).
pdb deposition date 2006-06-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF02975 Me-amine-dh_L Methylamine dehydrogenase, L chain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.30.10 Mainly Beta Sandwich Electron Transport Ethylamine Dehydrogenase Methylamine/Aralkylamine dehydrogenase light chain 2hjbD00
2AGWD 3PXTC 2Q7QD 3PXWC 2GC4B 2AH0D 1MG3B 2GC7B 2HXCD 2OK4D 3SXTC 2H3XB 2J56L 4O1QC 3RN0C 3SJLC 2MADL 4FA5C 3PXSC 3ORVC 2HJBD 2AGYD 2IUVD 2OJYD 2I0TD 2J55L 1MAEL 4L1QC 2OK6D 2AGZD 2IUQD 4L3GC 4FA1C 4FB1C 2J57K 4FA9C 3SVWC 3SWSC 4K3IC 2IUPD 1MAFL 3RMZC 2H47B 2IURD 2HJ4D 2I0SD 2HKMD 2IAAB 4FAVC 2OIZD 4L3HC 4Y5RC 1MG2B 1MDAL 3L4MC 3RN1C 3SLEC 4FANC 2AH1D 3RLMC 2AGLD 2AGXD 2BBKL 2HKRD 2I0RD 3L4OC 3C75L 2MTAL 4FA4C
chains in the Genus database with same CATH superfamily
2AGWD 3PXTC 2Q7QD 3PXWC 2GC4B 2AH0D 1MG3B 2GC7B 2HXCD 2OK4D 3SXTC 2H3XB 2J56L 4O1QC 3RN0C 3SJLC 2MADL 4FA5C 3PXSC 3ORVC 2HJBD 2AGYD 2IUVD 2OJYD 2I0TD 2J55L 1MAEL 4L1QC 2OK6D 2AGZD 2IUQD 4L3GC 4FA1C 4FB1C 2J57K 4FA9C 3SVWC 3SWSC 4K3IC 2IUPD 1MAFL 3RMZC 2H47B 2IURD 2HJ4D 2I0SD 2HKMD 2IAAB 4FAVC 2OIZD 4L3HC 4Y5RC 1MG2B 1MDAL 3L4MC 3RN1C 3SLEC 4FANC 2AH1D 3RLMC 2AGLD 2AGXD 2BBKL 2HKRD 2I0RD 3L4OC 3C75L 2MTAL 4FA4C
chains in the Genus database with same CATH topology
2AGWD 3PXTC 2Q7QD 3PXWC 2GC4B 2AH0D 1MG3B 2GC7B 2HXCD 2OK4D 3SXTC 2H3XB 2J56L 4O1QC 3RN0C 3SJLC 2MADL 4FA5C 3PXSC 3ORVC 2HJBD 2AGYD 2IUVD 2OJYD 2I0TD 2J55L 1MAEL 4L1QC 2OK6D 2AGZD 2IUQD 4L3GC 4FA1C 4FB1C 2J57K 4FA9C 3SVWC 3SWSC 4K3IC 2IUPD 1MAFL 3RMZC 2H47B 2IURD 2HJ4D 2I0SD 2HKMD 2IAAB 4FAVC 2OIZD 4L3HC 4Y5RC 1MG2B 1MDAL 3L4MC 3RN1C 3SLEC 4FANC 2AH1D 3RLMC 2AGLD 2AGXD 2BBKL 2HKRD 2I0RD 3L4OC 3C75L 2MTAL 4FA4C
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2AGW D;  3PXT C;  2Q7Q D;  3PXW C;  2GC4 B;  2AH0 D;  1MG3 B;  2GC7 B;  2HXC D;  2OK4 D;  3SXT C;  2H3X B;  2J56 L;  4O1Q C;  3RN0 C;  3SJL C;  2MAD L;  4FA5 C;  3PXS C;  3ORV C;  2HJB D;  2AGY D;  2IUV D;  2OJY D;  2I0T D;  2J55 L;  1MAE L;  4L1Q C;  2OK6 D;  2AGZ D;  2IUQ D;  4L3G C;  4FA1 C;  4FB1 C;  2J57 K;  4FA9 C;  3SVW C;  3SWS C;  4K3I C;  2IUP D;  1MAF L;  3RMZ C;  2H47 B;  2IUR D;  2HJ4 D;  2I0S D;  2HKM D;  2IAA B;  4FAV C;  2OIZ D;  4L3H C;  4Y5R C;  1MG2 B;  1MDA L;  3L4M C;  3RN1 C;  3SLE C;  4FAN C;  2AH1 D;  3RLM C;  2AGL D;  2AGX D;  2BBK L;  2HKR D;  2I0R D;  3L4O C;  3C75 L;  2MTA L;  4FA4 C; 
#chains in the Genus database with same CATH topology
 2AGW D;  3PXT C;  2Q7Q D;  3PXW C;  2GC4 B;  2AH0 D;  1MG3 B;  2GC7 B;  2HXC D;  2OK4 D;  3SXT C;  2H3X B;  2J56 L;  4O1Q C;  3RN0 C;  3SJL C;  2MAD L;  4FA5 C;  3PXS C;  3ORV C;  2HJB D;  2AGY D;  2IUV D;  2OJY D;  2I0T D;  2J55 L;  1MAE L;  4L1Q C;  2OK6 D;  2AGZ D;  2IUQ D;  4L3G C;  4FA1 C;  4FB1 C;  2J57 K;  4FA9 C;  3SVW C;  3SWS C;  4K3I C;  2IUP D;  1MAF L;  3RMZ C;  2H47 B;  2IUR D;  2HJ4 D;  2I0S D;  2HKM D;  2IAA B;  4FAV C;  2OIZ D;  4L3H C;  4Y5R C;  1MG2 B;  1MDA L;  3L4M C;  3RN1 C;  3SLE C;  4FAN C;  2AH1 D;  3RLM C;  2AGL D;  2AGX D;  2BBK L;  2HKR D;  2I0R D;  3L4O C;  3C75 L;  2MTA L;  4FA4 C; 
#chains in the Genus database with same CATH homology
 2AGW D;  3PXT C;  2Q7Q D;  3PXW C;  2GC4 B;  2AH0 D;  1MG3 B;  2GC7 B;  2HXC D;  2OK4 D;  3SXT C;  2H3X B;  2J56 L;  4O1Q C;  3RN0 C;  3SJL C;  2MAD L;  4FA5 C;  3PXS C;  3ORV C;  2HJB D;  2AGY D;  2IUV D;  2OJY D;  2I0T D;  2J55 L;  1MAE L;  4L1Q C;  2OK6 D;  2AGZ D;  2IUQ D;  4L3G C;  4FA1 C;  4FB1 C;  2J57 K;  4FA9 C;  3SVW C;  3SWS C;  4K3I C;  2IUP D;  1MAF L;  3RMZ C;  2H47 B;  2IUR D;  2HJ4 D;  2I0S D;  2HKM D;  2IAA B;  4FAV C;  2OIZ D;  4L3H C;  4Y5R C;  1MG2 B;  1MDA L;  3L4M C;  3RN1 C;  3SLE C;  4FAN C;  2AH1 D;  3RLM C;  2AGL D;  2AGX D;  2BBK L;  2HKR D;  2I0R D;  3L4O C;  3C75 L;  2MTA L;  4FA4 C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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