2HXC | Genus

Total Genus 29

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	29
Knots found	KnotProt 2.0: K
sequence length	110
structure length	109
Chain Sequence	EVNSCDYWRHCAVDGFLCSCCGGTTTTCPPGSTPSPISIGTCHNPHDGKDYLISYHDCCGKTACGRCQCNTQTRERPGYEFFLHNDVNWCMANENSTFHCTTSVLVGLA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 109 atoms

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109 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Oxidoreductase
publication title	Atomic level insight into the oxidative half-reaction of aromatic amine dehydrogenase. pubmed doi rcsb
molecule keywords	Aromatic amine dehydrogenase
total genus	29
structure length	109
sequence length	110
chains with identical sequence	H
other databases	KnotProt 2.0: K
ec nomenclature	ec 1.4.9.2: Aralkylamine dehydrogenase (azurin).
pdb deposition date	2006-08-03

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
D	PF02975	Me-amine-dh_L	Methylamine dehydrogenase, L chain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.60.30.10	Mainly Beta	Sandwich	Electron Transport Ethylamine Dehydrogenase	Methylamine/Aralkylamine dehydrogenase light chain	2hxcD00

3PXWC 2I0TD 2Q7QD 3RMZC 2AH0D 2I0RD 1MG2B 3RN0C 3ORVC 2IAAB 3PXTC 1MAFL 4L3GC 2AGLD 4FANC 4FA5C 3SVWC 2H47B 3SLEC 2AGWD 3RLMC 3PXSC 2IURD 2AGXD 4FA1C 2IUPD 2J56L 3L4OC 4Y5RC 2J57K 1MG3B 2GC4B 4L1QC 1MAEL 3RN1C 1MDAL 2OJYD 2AH1D 4FB1C 2HKMD 2OK4D 2HXCD 4O1QC 2MADL 2BBKL 2IUQD 2HKRD 2HJBD 2AGYD 4K3IC 4FA9C 2AGZD 2OK6D 3SJLC 2J55L 3L4MC 2MTAL 2HJ4D 3SWSC 4L3HC 2OIZD 2IUVD 4FAVC 4FA4C 3SXTC 2H3XB 2GC7B 2I0SD 3C75L
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 3PXW C;  2I0T D;  2Q7Q D;  3RMZ C;  2AH0 D;  2I0R D;  1MG2 B;  3RN0 C;  3ORV C;  2IAA B;  3PXT C;  1MAF L;  4L3G C;  2AGL D;  4FAN C;  4FA5 C;  3SVW C;  2H47 B;  3SLE C;  2AGW D;  3RLM C;  3PXS C;  2IUR D;  2AGX D;  4FA1 C;  2IUP D;  2J56 L;  3L4O C;  4Y5R C;  2J57 K;  1MG3 B;  2GC4 B;  4L1Q C;  1MAE L;  3RN1 C;  1MDA L;  2OJY D;  2AH1 D;  4FB1 C;  2HKM D;  2OK4 D;  2HXC D;  4O1Q C;  2MAD L;  2BBK L;  2IUQ D;  2HKR D;  2HJB D;  2AGY D;  4K3I C;  4FA9 C;  2AGZ D;  2OK6 D;  3SJL C;  2J55 L;  3L4M C;  2MTA L;  2HJ4 D;  3SWS C;  4L3H C;  2OIZ D;  2IUV D;  4FAV C;  4FA4 C;  3SXT C;  2H3X B;  2GC7 B;  2I0S D;  3C75 L; 
#chains in the Genus database with same CATH topology
 3PXW C;  2I0T D;  2Q7Q D;  3RMZ C;  2AH0 D;  2I0R D;  1MG2 B;  3RN0 C;  3ORV C;  2IAA B;  3PXT C;  1MAF L;  4L3G C;  2AGL D;  4FAN C;  4FA5 C;  3SVW C;  2H47 B;  3SLE C;  2AGW D;  3RLM C;  3PXS C;  2IUR D;  2AGX D;  4FA1 C;  2IUP D;  2J56 L;  3L4O C;  4Y5R C;  2J57 K;  1MG3 B;  2GC4 B;  4L1Q C;  1MAE L;  3RN1 C;  1MDA L;  2OJY D;  2AH1 D;  4FB1 C;  2HKM D;  2OK4 D;  2HXC D;  4O1Q C;  2MAD L;  2BBK L;  2IUQ D;  2HKR D;  2HJB D;  2AGY D;  4K3I C;  4FA9 C;  2AGZ D;  2OK6 D;  3SJL C;  2J55 L;  3L4M C;  2MTA L;  2HJ4 D;  3SWS C;  4L3H C;  2OIZ D;  2IUV D;  4FAV C;  4FA4 C;  3SXT C;  2H3X B;  2GC7 B;  2I0S D;  3C75 L; 
#chains in the Genus database with same CATH homology
 3PXW C;  2I0T D;  2Q7Q D;  3RMZ C;  2AH0 D;  2I0R D;  1MG2 B;  3RN0 C;  3ORV C;  2IAA B;  3PXT C;  1MAF L;  4L3G C;  2AGL D;  4FAN C;  4FA5 C;  3SVW C;  2H47 B;  3SLE C;  2AGW D;  3RLM C;  3PXS C;  2IUR D;  2AGX D;  4FA1 C;  2IUP D;  2J56 L;  3L4O C;  4Y5R C;  2J57 K;  1MG3 B;  2GC4 B;  4L1Q C;  1MAE L;  3RN1 C;  1MDA L;  2OJY D;  2AH1 D;  4FB1 C;  2HKM D;  2OK4 D;  2HXC D;  4O1Q C;  2MAD L;  2BBK L;  2IUQ D;  2HKR D;  2HJB D;  2AGY D;  4K3I C;  4FA9 C;  2AGZ D;  2OK6 D;  3SJL C;  2J55 L;  3L4M C;  2MTA L;  2HJ4 D;  3SWS C;  4L3H C;  2OIZ D;  2IUV D;  4FAV C;  4FA4 C;  3SXT C;  2H3X B;  2GC7 B;  2I0S D;  3C75 L;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2HXCD

Total Genus

Knots found

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations