2J56L

X-ray reduced paraccocus denitrificans methylamine dehydrogenase n- semiquinone in complex with amicyanin.
Total Genus 31

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
31
Knots found
sequence length
125
structure length
124
Chain Sequence
TDPRAKWVPQDNDIQACDYWRHCSIDGNICDCSGGSLTNCPPGTKLATASVASCYNPTDGQSYLIAYRDCCGYNVSGRCPCLNTEGELPVYRPEFANDIIWCFGAEDDAMTYHCTISPIVGKAS

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTI1 (8-11)TI2 (19-22)O5 (23-88)TIV1 (28-31)TI7 (64-67)TI3 (22-25)TIV4 (84-87)TI8 (96-99)TI4 (25-28)TII3 (109-112)3H3 (113-115)S1 (32-34)TI5 (26-29)S5 (75-78)3H1 (36-38)TIV2 (38-41)O7 (36-121)TI6 (42-45)S4 (68-72)TIV6 (103-106)S2 (51-52)TIV3 (63-66)S3 (59-63)S7 (119-123)3H2 (100-102)O1 (73-75)S6 (87-89)TII2 (91-94)TII1 (47-50)Updating...
connected with : NaN
publication title Tracking X-Ray-Derived Redox Changes in Crystals of a Methylamine Dehydrogenase/Amicyanin Complex Using Single-Crystal Uv/Vis Microspectrophotometry.
pubmed doi rcsb
molecule keywords AMICYANIN
molecule tags Oxidoreductase
total genus 31
structure length 124
sequence length 125
chains with identical sequence M
other databases KnotProt 2.0: K
ec nomenclature ec 1.4.9.1: Methylamine dehydrogenase (amicyanin).
pdb deposition date 2006-09-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
L PF02975 Me-amine-dh_L Methylamine dehydrogenase, L chain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.30.10 Mainly Beta Sandwich Electron Transport Ethylamine Dehydrogenase Methylamine/Aralkylamine dehydrogenase light chain 2j56L00
2IAAB 3L4OC 2H47B 2AGLD 2BBKL 2GC4B 2Q7QD 3PXSC 2HJ4D 2OK4D 4FAVC 3RN0C 4Y5RC 4O1QC 1MDAL 4FA5C 2AH1D 4FA9C 1MG3B 2AGWD 3L4MC 2I0SD 2J55L 3PXWC 3RLMC 3RMZC 2AGYD 1MAEL 2H3XB 3SLEC 2AGZD 2IURD 2OJYD 4L3GC 2IUPD 3SJLC 2AH0D 2MTAL 4K3IC 2I0TD 4FB1C 3SVWC 4FA4C 2J56L 2HKMD 2GC7B 3RN1C 4L3HC 2AGXD 3C75L 3SXTC 4FA1C 2IUQD 2MADL 4FANC 2J57K 2IUVD 4L1QC 3ORVC 2I0RD 3PXTC 1MG2B 2OK6D 2OIZD 2HJBD 2HKRD 2HXCD 3SWSC 1MAFL
chains in the Genus database with same CATH superfamily
2IAAB 3L4OC 2H47B 2AGLD 2BBKL 2GC4B 2Q7QD 3PXSC 2HJ4D 2OK4D 4FAVC 3RN0C 4Y5RC 4O1QC 1MDAL 4FA5C 2AH1D 4FA9C 1MG3B 2AGWD 3L4MC 2I0SD 2J55L 3PXWC 3RLMC 3RMZC 2AGYD 1MAEL 2H3XB 3SLEC 2AGZD 2IURD 2OJYD 4L3GC 2IUPD 3SJLC 2AH0D 2MTAL 4K3IC 2I0TD 4FB1C 3SVWC 4FA4C 2J56L 2HKMD 2GC7B 3RN1C 4L3HC 2AGXD 3C75L 3SXTC 4FA1C 2IUQD 2MADL 4FANC 2J57K 2IUVD 4L1QC 3ORVC 2I0RD 3PXTC 1MG2B 2OK6D 2OIZD 2HJBD 2HKRD 2HXCD 3SWSC 1MAFL
chains in the Genus database with same CATH topology
2IAAB 3L4OC 2H47B 2AGLD 2BBKL 2GC4B 2Q7QD 3PXSC 2HJ4D 2OK4D 4FAVC 3RN0C 4Y5RC 4O1QC 1MDAL 4FA5C 2AH1D 4FA9C 1MG3B 2AGWD 3L4MC 2I0SD 2J55L 3PXWC 3RLMC 3RMZC 2AGYD 1MAEL 2H3XB 3SLEC 2AGZD 2IURD 2OJYD 4L3GC 2IUPD 3SJLC 2AH0D 2MTAL 4K3IC 2I0TD 4FB1C 3SVWC 4FA4C 2J56L 2HKMD 2GC7B 3RN1C 4L3HC 2AGXD 3C75L 3SXTC 4FA1C 2IUQD 2MADL 4FANC 2J57K 2IUVD 4L1QC 3ORVC 2I0RD 3PXTC 1MG2B 2OK6D 2OIZD 2HJBD 2HKRD 2HXCD 3SWSC 1MAFL
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2IAA B;  3L4O C;  2H47 B;  2AGL D;  2BBK L;  2GC4 B;  2Q7Q D;  3PXS C;  2HJ4 D;  2OK4 D;  4FAV C;  3RN0 C;  4Y5R C;  4O1Q C;  1MDA L;  4FA5 C;  2AH1 D;  4FA9 C;  1MG3 B;  2AGW D;  3L4M C;  2I0S D;  2J55 L;  3PXW C;  3RLM C;  3RMZ C;  2AGY D;  1MAE L;  2H3X B;  3SLE C;  2AGZ D;  2IUR D;  2OJY D;  4L3G C;  2IUP D;  3SJL C;  2AH0 D;  2MTA L;  4K3I C;  2I0T D;  4FB1 C;  3SVW C;  4FA4 C;  2J56 L;  2HKM D;  2GC7 B;  3RN1 C;  4L3H C;  2AGX D;  3C75 L;  3SXT C;  4FA1 C;  2IUQ D;  2MAD L;  4FAN C;  2J57 K;  2IUV D;  4L1Q C;  3ORV C;  2I0R D;  3PXT C;  1MG2 B;  2OK6 D;  2OIZ D;  2HJB D;  2HKR D;  2HXC D;  3SWS C;  1MAF L; 
#chains in the Genus database with same CATH topology
 2IAA B;  3L4O C;  2H47 B;  2AGL D;  2BBK L;  2GC4 B;  2Q7Q D;  3PXS C;  2HJ4 D;  2OK4 D;  4FAV C;  3RN0 C;  4Y5R C;  4O1Q C;  1MDA L;  4FA5 C;  2AH1 D;  4FA9 C;  1MG3 B;  2AGW D;  3L4M C;  2I0S D;  2J55 L;  3PXW C;  3RLM C;  3RMZ C;  2AGY D;  1MAE L;  2H3X B;  3SLE C;  2AGZ D;  2IUR D;  2OJY D;  4L3G C;  2IUP D;  3SJL C;  2AH0 D;  2MTA L;  4K3I C;  2I0T D;  4FB1 C;  3SVW C;  4FA4 C;  2J56 L;  2HKM D;  2GC7 B;  3RN1 C;  4L3H C;  2AGX D;  3C75 L;  3SXT C;  4FA1 C;  2IUQ D;  2MAD L;  4FAN C;  2J57 K;  2IUV D;  4L1Q C;  3ORV C;  2I0R D;  3PXT C;  1MG2 B;  2OK6 D;  2OIZ D;  2HJB D;  2HKR D;  2HXC D;  3SWS C;  1MAF L; 
#chains in the Genus database with same CATH homology
 2IAA B;  3L4O C;  2H47 B;  2AGL D;  2BBK L;  2GC4 B;  2Q7Q D;  3PXS C;  2HJ4 D;  2OK4 D;  4FAV C;  3RN0 C;  4Y5R C;  4O1Q C;  1MDA L;  4FA5 C;  2AH1 D;  4FA9 C;  1MG3 B;  2AGW D;  3L4M C;  2I0S D;  2J55 L;  3PXW C;  3RLM C;  3RMZ C;  2AGY D;  1MAE L;  2H3X B;  3SLE C;  2AGZ D;  2IUR D;  2OJY D;  4L3G C;  2IUP D;  3SJL C;  2AH0 D;  2MTA L;  4K3I C;  2I0T D;  4FB1 C;  3SVW C;  4FA4 C;  2J56 L;  2HKM D;  2GC7 B;  3RN1 C;  4L3H C;  2AGX D;  3C75 L;  3SXT C;  4FA1 C;  2IUQ D;  2MAD L;  4FAN C;  2J57 K;  2IUV D;  4L1Q C;  3ORV C;  2I0R D;  3PXT C;  1MG2 B;  2OK6 D;  2OIZ D;  2HJB D;  2HKR D;  2HXC D;  3SWS C;  1MAF L; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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