2J56 | Genus

Total Genus 31

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	31
Knots found	KnotProt 2.0: K
sequence length	125
structure length	124
Chain Sequence	TDPRAKWVPQDNDIQACDYWRHCSIDGNICDCSGGSLTNCPPGTKLATASVASCYNPTDGQSYLIAYRDCCGYNVSGRCPCLNTEGELPVYRPEFANDIIWCFGAEDDAMTYHCTISPIVGKAS

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 124 atoms

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124 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Tracking X-Ray-Derived Redox Changes in Crystals of a Methylamine Dehydrogenase/Amicyanin Complex Using Single-Crystal Uv/Vis Microspectrophotometry. pubmed doi rcsb
molecule keywords	AMICYANIN
molecule tags	Oxidoreductase
total genus	31
structure length	124
sequence length	125
chains with identical sequence	M
other databases	KnotProt 2.0: K
ec nomenclature	ec 1.4.9.1: Methylamine dehydrogenase (amicyanin).
pdb deposition date	2006-09-12

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
L	PF02975	Me-amine-dh_L	Methylamine dehydrogenase, L chain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.60.30.10	Mainly Beta	Sandwich	Electron Transport Ethylamine Dehydrogenase	Methylamine/Aralkylamine dehydrogenase light chain	2j56L00

2J56L 2OK6D 4FANC 2BBKL 1MG3B 1MDAL 3PXWC 2J57K 2HJBD 3C75L 4O1QC 4FB1C 2IUVD 2IAAB 3RLMC 1MAFL 4Y5RC 3SWSC 2OJYD 2AGZD 3L4MC 2AH1D 3ORVC 3L4OC 4L3GC 1MAEL 2GC7B 2AH0D 4FA5C 4FA4C 2AGLD 2IUQD 1MG2B 2Q7QD 2HJ4D 2MTAL 4FA9C 4FA1C 3SXTC 3RMZC 2IURD 2HKRD 3SJLC 2H3XB 3SLEC 2OK4D 2I0RD 2IUPD 2AGWD 4L1QC 2H47B 2AGXD 2J55L 2MADL 3SVWC 3PXTC 3RN0C 4FAVC 4K3IC 2GC4B 2OIZD 3PXSC 2AGYD 2I0TD 2HKMD 4L3HC 3RN1C 2HXCD 2I0SD
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 2J56 L;  2OK6 D;  4FAN C;  2BBK L;  1MG3 B;  1MDA L;  3PXW C;  2J57 K;  2HJB D;  3C75 L;  4O1Q C;  4FB1 C;  2IUV D;  2IAA B;  3RLM C;  1MAF L;  4Y5R C;  3SWS C;  2OJY D;  2AGZ D;  3L4M C;  2AH1 D;  3ORV C;  3L4O C;  4L3G C;  1MAE L;  2GC7 B;  2AH0 D;  4FA5 C;  4FA4 C;  2AGL D;  2IUQ D;  1MG2 B;  2Q7Q D;  2HJ4 D;  2MTA L;  4FA9 C;  4FA1 C;  3SXT C;  3RMZ C;  2IUR D;  2HKR D;  3SJL C;  2H3X B;  3SLE C;  2OK4 D;  2I0R D;  2IUP D;  2AGW D;  4L1Q C;  2H47 B;  2AGX D;  2J55 L;  2MAD L;  3SVW C;  3PXT C;  3RN0 C;  4FAV C;  4K3I C;  2GC4 B;  2OIZ D;  3PXS C;  2AGY D;  2I0T D;  2HKM D;  4L3H C;  3RN1 C;  2HXC D;  2I0S D; 
#chains in the Genus database with same CATH topology
 2J56 L;  2OK6 D;  4FAN C;  2BBK L;  1MG3 B;  1MDA L;  3PXW C;  2J57 K;  2HJB D;  3C75 L;  4O1Q C;  4FB1 C;  2IUV D;  2IAA B;  3RLM C;  1MAF L;  4Y5R C;  3SWS C;  2OJY D;  2AGZ D;  3L4M C;  2AH1 D;  3ORV C;  3L4O C;  4L3G C;  1MAE L;  2GC7 B;  2AH0 D;  4FA5 C;  4FA4 C;  2AGL D;  2IUQ D;  1MG2 B;  2Q7Q D;  2HJ4 D;  2MTA L;  4FA9 C;  4FA1 C;  3SXT C;  3RMZ C;  2IUR D;  2HKR D;  3SJL C;  2H3X B;  3SLE C;  2OK4 D;  2I0R D;  2IUP D;  2AGW D;  4L1Q C;  2H47 B;  2AGX D;  2J55 L;  2MAD L;  3SVW C;  3PXT C;  3RN0 C;  4FAV C;  4K3I C;  2GC4 B;  2OIZ D;  3PXS C;  2AGY D;  2I0T D;  2HKM D;  4L3H C;  3RN1 C;  2HXC D;  2I0S D; 
#chains in the Genus database with same CATH homology
 2J56 L;  2OK6 D;  4FAN C;  2BBK L;  1MG3 B;  1MDA L;  3PXW C;  2J57 K;  2HJB D;  3C75 L;  4O1Q C;  4FB1 C;  2IUV D;  2IAA B;  3RLM C;  1MAF L;  4Y5R C;  3SWS C;  2OJY D;  2AGZ D;  3L4M C;  2AH1 D;  3ORV C;  3L4O C;  4L3G C;  1MAE L;  2GC7 B;  2AH0 D;  4FA5 C;  4FA4 C;  2AGL D;  2IUQ D;  1MG2 B;  2Q7Q D;  2HJ4 D;  2MTA L;  4FA9 C;  4FA1 C;  3SXT C;  3RMZ C;  2IUR D;  2HKR D;  3SJL C;  2H3X B;  3SLE C;  2OK4 D;  2I0R D;  2IUP D;  2AGW D;  4L1Q C;  2H47 B;  2AGX D;  2J55 L;  2MAD L;  3SVW C;  3PXT C;  3RN0 C;  4FAV C;  4K3I C;  2GC4 B;  2OIZ D;  3PXS C;  2AGY D;  2I0T D;  2HKM D;  4L3H C;  3RN1 C;  2HXC D;  2I0S D;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2J56L

Total Genus

Knots found

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations