The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
127
|
sequence length |
389
|
structure length |
383
|
Chain Sequence |
GSAIQDYFVKNRVGHSKPWESGKFKAADNFPDLSKHNNVMASQLTKELYEKYWDKVTPNGVTFDKCIQTGVDNPGNKFYGKKTGCVFGDEYSYECYKEFFDKCIEEIHHFKPSDKHPAPDLDHNKLVGGVFEDKYVKSCRIRCGRSVKGVCLPPAMSRAERRLVEKVVSDALGGLKGDLAGKYYPLTTMNEKDQEQLIEDHFLFEKPTGALLTTSGCARDWPDGRGIWHNNEKNFLVWINEEDHIRVISMQKGGDLKAVFSRFARGLLEVERLMKECGHGLMHNDRLGYICTCPTNMGTVVRASVHLRLAFLEKHPRFDEMLGKLRLGKRGLATDSTYDISNWARLGKSERELVQVLVDGVNLLIACDKKLEAGQSIDDMIPK
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structural basis for the mechanism and substrate specificity of glycocyamine kinase, a phosphagen kinase family member.
pubmed doi rcsb |
| molecule tags |
Transferase
|
| source organism |
Namalycastis sp. st01
|
| molecule keywords |
Glycocyamine kinase alpha chain
|
| total genus |
127
|
| structure length |
383
|
| sequence length |
389
|
| chains with identical sequence |
D
|
| ec nomenclature |
ec
2.7.3.1: Guanidinoacetate kinase. |
| pdb deposition date | 2009-12-15 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| B | PF00217 | ATP-gua_Ptrans | ATP:guanido phosphotransferase, C-terminal catalytic domain |
| B | PF02807 | ATP-gua_PtransN | ATP:guanido phosphotransferase, N-terminal domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | Transferase Creatine Kinase; Chain A, domain 1 | ATP:guanido phosphotransferase, N-terminal domain | ||
| Alpha Beta | 2-Layer Sandwich | Creatine Kinase; Chain A, domain 2 | Glutamine synthetase/guanido kinase, catalytic domain |
#chains in the Genus database with same CATH superfamily 4RF7 A; 4BG4 B; 4GVZ A; 1P50 A; 4AM1 A; 3B6R A; 1BG0 A; 3M10 A; 3ZXV A; 1U6R A; 1I0E A; 5J9A A; 1HTQ A; 1F1H A; 4LNK A; 4LNF A; 4S0R A; 3NG0 A; 3DRB A; 4BG4 A; 4GVY A; 3JQ3 A; 2CRK A; 1SD0 A; 4RF6 A; 1LGR A; 1QK1 A; 4Z9M A; 4XYC A; 1QH4 A; 4GW0 A; 2J1Q A; 1F52 A; 4LNN A; 3ZXR A; 4BHL A; 3JU6 A; 4RF8 A; 4GW2 A; 2BVC A; 4HPP A; 1CRK A; 4RF9 A; 2WHI A; 1FPY A; 1P52 A; 3L2E B; 2WGS A; 4LNI A; 3DRE A; 5J99 A; 4S17 A; 1M15 A; 3JPZ A; 4ACF A; 1RL9 A; 4Q2R A; 3L2D A; 1HTO A; 4LNO A; 2GLS A; 3JU5 A; 1VRP A; 1G0W A; 3L2E A; 2LGS A; #chains in the Genus database with same CATH topology 4GVZ A; 4AM1 A; 3DRB A; 4BG4 A; 3JQ3 A; 1QK1 A; 4GW0 A; 4RF8 A; 3LN6 A; 4GW2 A; 4HPP A; 1CRK A; 1R8G A; 3L2E B; 2WGS A; 3DRE A; 1HTO A; 1V4G A; 2GLS A; 1VRP A; 2D33 A; 2D32 A; 4RF7 A; 4BG4 B; 1P50 A; 3B6R A; 3ZXV A; 4LNK A; 3NG0 A; 2CRK A; 4XYC A; 2QC8 A; 2UU7 A; 3ZXR A; 2J1Q A; 2BVC A; 2WHI A; 4S17 A; 1P52 A; 4LNI A; 1RL9 A; 4Q2R A; 3L2D A; 3LVV A; 3LVW A; 4LNO A; 2D3C A; 2D3B A; 2LGS A; 4BAX A; 1U6R A; 1I0E A; 2GWD A; 1F1H A; 1VA6 A; 1TT4 A; 4S0R A; 3NZT A; 2D3A A; 4GVY A; 4RF6 A; 1QH4 A; 4LNN A; 4RF9 A; 3JPZ A; 1SD0 A; 1G0W A; 2GWC A; 1BG0 A; 3M10 A; 5J9A A; 1HTQ A; 4LNF A; 3IG8 A; 1LGR A; 4Z9M A; 1F52 A; 3LN7 A; 4BHL A; 3JU6 A; 3FKY A; 1FPY A; 4ACF A; 5J99 A; 1M15 A; 2OJW A; 3IG5 A; 3JU5 A; 3L2E A; #chains in the Genus database with same CATH homology 4RF7 A; 4BG4 B; 4GVZ A; 1P50 A; 4AM1 A; 3B6R A; 1BG0 A; 3M10 A; 3ZXV A; 1U6R A; 1I0E A; 5J9A A; 1HTQ A; 1F1H A; 4LNK A; 4LNF A; 4S0R A; 3NG0 A; 3DRB A; 4BG4 A; 4GVY A; 3JQ3 A; 2CRK A; 1SD0 A; 4RF6 A; 1LGR A; 1QK1 A; 4Z9M A; 4XYC A; 1QH4 A; 4GW0 A; 2J1Q A; 1F52 A; 4LNN A; 3ZXR A; 4BHL A; 3JU6 A; 4RF8 A; 4GW2 A; 2BVC A; 4HPP A; 1CRK A; 4RF9 A; 2WHI A; 1FPY A; 1P52 A; 3L2E B; 2WGS A; 4LNI A; 3DRE A; 5J99 A; 4S17 A; 1M15 A; 3JPZ A; 4ACF A; 1RL9 A; 4Q2R A; 3L2D A; 1HTO A; 4LNO A; 2GLS A; 3JU5 A; 1VRP A; 1G0W A; 3L2E A; 2LGS A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
