The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
91
|
sequence length |
366
|
structure length |
344
|
Chain Sequence |
EANGNQDIAKLEAYFGTKMEMTLKDLPTVGVHTPSPWAGPYWPTYQDSINVQWSQGQPSAAEKYAKAFGKDVKTFMDAVSKKNGIDSQSGRKKCSSDDDCSTLTDGSSCSIRTGKTSGYCIPTWFGISHAWSPAAILETEPKCPVKHNGVTFQPMDLKALVSLVYDGARVQTVFTGDLNPAYFHIASANILGKLNSTFVADVTAGAEVWNQPVRGFKVYEQTEMTLEEGAQTFYGLEAYPWNAAAKSLVYVKSRLSWIYETYTDGGLVSSGQIDKFTTGQYYYYLLELDDAGEIIGGEWVYGSDDDHPDFLWLPKAKPAANTVTSVGLSYADVSMLLKKSAACT
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structural and Phylogenetic Analyses of the GP42 Transglutaminase from Phytophthora sojae Reveal an Evolutionary Relationship between Oomycetes and Marine Vibrio Bacteria.
pubmed doi rcsb |
| molecule tags |
Transferase
|
| source organism |
Phytophthora sojae
|
| molecule keywords |
Transglutaminase elicitor
|
| total genus |
91
|
| structure length |
344
|
| sequence length |
366
|
| chains with identical sequence |
B
|
| ec nomenclature |
ec
2.3.2.13: Protein-glutamine gamma-glutamyltransferase. |
| pdb deposition date | 2011-09-21 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF16683 | TGase_elicitor | Transglutaminase elicitor |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | Annexin V; domain 1 | Annexin V; domain 1 |
#chains in the Genus database with same CATH superfamily 3TW5 A; #chains in the Genus database with same CATH topology 3ABO A; 4MDU A; 1N00 A; 1YJ0 A; 3LTL A; 1HVD A; 1BO9 A; 2HYV A; 4HRE A; 1AVR A; 1M9I A; 1BC3 A; 1YII A; 1G5N A; 1DM5 A; 4JWL A; 3AJC A; 1BCY A; 1ANX A; 4C7P A; 4JMO A; 1R8Q E; 1HAK A; 1W7B A; 2XO3 A; 3SWV A; 1AII A; 2QEZ A; 1YGM A; 2H0K A; 1R8S E; 4EVH A; 2H0L A; 1HVG A; 1BCZ A; 4A4P A; 4C0A A; 4KN4 X; 1PBV A; 1R8M E; 2ZOC A; 2HYW A; 1BC1 A; 4JMI A; 4Q2S A; 4JK1 X; 1N42 A; 4MDV A; 2Q4C A; 4D7R A; 1S9D E; 1SAV A; 4OIY A; 4Z21 A; 1KU1 A; 1AXN A; 1LKV X; 1HVE A; 2ZHI A; 2R0D A; 2XO2 A; 3AO0 A; 1AVH A; 1XSZ A; 3L8N A; 1MCX A; 1RE0 B; 4KMU X; 1R4A E; 2ZHJ A; 1UPT B; 2HYU A; 2HSN A; 1XJL A; 2H0M A; 1HM6 A; 3HJL A; 4JXH A; 1N41 A; 1N44 A; 1AVC A; 1ANW A; 3BRX A; 3ANY A; 4KN7 X; 4L5M A; 3USY A; 2RAN A; 4FHR B; 2II2 A; 1BCW A; 1ALA A; 2R09 A; 1DK5 A; 1ANN A; 1C1K A; 3USW A; 1AOW A; 1A8A A; 2IE6 A; 1Q8D A; 1AEI A; 2IIC A; 3ABR A; 1I4A A; 1XT0 B; 4D7Q A; 2K6X A; 2IE7 A; 4X9P A; 2VXG A; 1A8B A; 1BC9 A; 3ABS A; 4EVF A; 3TW5 A; 2OY9 A; 1W45 A; 1YCN A; 3ABQ A; 1W3W A; 4FQ0 C; 1BC0 A; 3SOH B; 1HVF A; 1QC7 A; #chains in the Genus database with same CATH homology 2R09 A; 3USW A; 4A4P A; 4C0A A; 1XSZ A; 3LTL A; 3L8N A; 4KN4 X; 1Q8D A; 1PBV A; 1RE0 B; 1XT0 B; 1R8M E; 2K6X A; 4KMU X; 4D7Q A; 4JWL A; 4JMI A; 3AJC A; 2HSN A; 1BC9 A; 4JK1 X; 3TW5 A; 3HJL A; 4C7P A; 4JXH A; 4JMO A; 1R8Q E; 1S9D E; 4OIY A; 4D7R A; 4Z21 A; 1KU1 A; 4KN7 X; 4FQ0 C; 3SWV A; 1LKV X; 4L5M A; 3USY A; 1R8S E; 3SOH B; 4FHR B; 2R0D A; 1QC7 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
