3USWA

Crystal structure of flig (residues 86-343) from h. pylori
Total Genus 76
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
76
sequence length
219
structure length
212
Chain Sequence
KNFAYLGKIKPQQLADFIINEHPQTIALILAHMEAPNAAETLSYFPDEMKAEISIRMANLGEISPQVVKRVSTVLENKLEEVGGLRAVAEIFNRLGQKSAKTTLARIESVDNKLAGAIKEMMFTFEDIVKLDNFAIREILKVADKKDLSLALKTSTKDLTDKFLNNMSSRAAEQFVEEMQYLGAVKIKDVDVAQRKIIEIVQSLQEKGVIQT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Multiple conformations of the FliG C-terminal domain provide insight into flagellar motor switching
pubmed doi rcsb
molecule tags Motor protein
source organism Helicobacter pylori
molecule keywords Flagellar motor switch protein
total genus 76
structure length 212
sequence length 219
ec nomenclature
pdb deposition date 2011-11-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01706 FliG_C FliG C-terminal domain
A PF14841 FliG_M FliG middle domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.220.30 Mainly Alpha Orthogonal Bundle Annexin V; domain 1 Annexin V; domain 1 3uswA03
1.10.220.30 Mainly Alpha Orthogonal Bundle Annexin V; domain 1 Annexin V; domain 1 3uswA01
4FQ0C 1QC7A 3USWA 4FHRB 3AJCA 3USYA 1LKVX 3SOHB 3HJLA
chains in the Genus database with same CATH superfamily
3AO0A 2HSNA 4Z21A 2IICA 2IE6A 4C7PA 1BCWA 1HM6A 2H0MA 3ABSA 2R09A 2VXGA 1ANWA 4D7RA 1BCYA 4FQ0C 1XT0B 1XSZA 3L8NA 4HREA 4Q2SA 4C0AA 1BC0A 1MCXA 3ABRA 1YIIA 1ANXA 1LKVX 1AOWA 1S9DE 2HYWA 1N41A 1W7BA 1I4AA 2XO2A 2HYUA 3HJLA 1R8QE 1R8SE 4X9PA 1HVFA 1N44A 3TW5A 1DM5A 1M9IA 4EVFA 1AIIA 4MDUA 1W3WA 2QEZA 3USWA 3AJCA 1SAVA 1UPTB 1BO9A 2OY9A 1BC9A 1N42A 1RE0B 1C1KA 1HVGA 4D7QA 2ZHIA 4JMOA 1PBVA 1BC3A 1R4AE 4KMUX 2Q4CA 4FHRB 2K6XA 4A4PA 2XO3A 3ANYA 1AXNA 1KU1A 3SOHB 1BCZA 1YJ0A 1ALAA 3ABOA 3SWVA 3BRXA 1HVEA 1DK5A 1HAKA 1XJLA 3USYA 2HYVA 4KN7X 1AVRA 1QC7A 3ABQA 4JMIA 4JXHA 1AVHA 1R8ME 2RANA 1AEIA 1YCNA 2H0KA 4KN4X 1G5NA 2H0LA 3LTLA 1A8AA 1AVCA 4JK1X 1W45A 2IE7A 1BC1A 1HVDA 4OIYA 2ZHJA 1ANNA 1N00A 4MDVA 2II2A 4EVHA 4L5MA 4JWLA 1A8BA 2R0DA 2ZOCA 1Q8DA 1YGMA
chains in the Genus database with same CATH topology
4KN7X 1BC9A 1QC7A 1RE0B 4JMIA 2HSNA 4Z21A 4D7QA 4JMOA 1R8ME 1PBVA 1S9DE 4C7PA 4KN4X 4KMUX 4FHRB 2K6XA 4A4PA 2R09A 3LTLA 3HJLA 1R8QE 4D7RA 1R8SE 4FQ0C 4JK1X 1XT0B 1XSZA 3L8NA 4OIYA 3TW5A 1KU1A 3SOHB 4C0AA 3SWVA 4L5MA 4JWLA 3USWA 3AJCA 2R0DA 1LKVX 1Q8DA 3USYA 4JXHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4FQ0 C;  1QC7 A;  3USW A;  4FHR B;  3AJC A;  3USY A;  1LKV X;  3SOH B;  3HJL A; 
#chains in the Genus database with same CATH topology
 3AO0 A;  2HSN A;  4Z21 A;  2IIC A;  2IE6 A;  4C7P A;  1BCW A;  1HM6 A;  2H0M A;  3ABS A;  2R09 A;  2VXG A;  1ANW A;  4D7R A;  1BCY A;  4FQ0 C;  1XT0 B;  1XSZ A;  3L8N A;  4HRE A;  4Q2S A;  4C0A A;  1BC0 A;  1MCX A;  3ABR A;  1YII A;  1ANX A;  1LKV X;  1AOW A;  1S9D E;  2HYW A;  1N41 A;  1W7B A;  1I4A A;  2XO2 A;  2HYU A;  3HJL A;  1R8Q E;  1R8S E;  4X9P A;  1HVF A;  1N44 A;  3TW5 A;  1DM5 A;  1M9I A;  4EVF A;  1AII A;  4MDU A;  1W3W A;  2QEZ A;  3USW A;  3AJC A;  1SAV A;  1UPT B;  1BO9 A;  2OY9 A;  1BC9 A;  1N42 A;  1RE0 B;  1C1K A;  1HVG A;  4D7Q A;  2ZHI A;  4JMO A;  1PBV A;  1BC3 A;  1R4A E;  4KMU X;  2Q4C A;  4FHR B;  2K6X A;  4A4P A;  2XO3 A;  3ANY A;  1AXN A;  1KU1 A;  3SOH B;  1BCZ A;  1YJ0 A;  1ALA A;  3ABO A;  3SWV A;  3BRX A;  1HVE A;  1DK5 A;  1HAK A;  1XJL A;  3USY A;  2HYV A;  4KN7 X;  1AVR A;  1QC7 A;  3ABQ A;  4JMI A;  4JXH A;  1AVH A;  1R8M E;  2RAN A;  1AEI A;  1YCN A;  2H0K A;  4KN4 X;  1G5N A;  2H0L A;  3LTL A;  1A8A A;  1AVC A;  4JK1 X;  1W45 A;  2IE7 A;  1BC1 A;  1HVD A;  4OIY A;  2ZHJ A;  1ANN A;  1N00 A;  4MDV A;  2II2 A;  4EVH A;  4L5M A;  4JWL A;  1A8B A;  2R0D A;  2ZOC A;  1Q8D A;  1YGM A; 
#chains in the Genus database with same CATH homology
 4KN7 X;  1BC9 A;  1QC7 A;  1RE0 B;  4JMI A;  2HSN A;  4Z21 A;  4D7Q A;  4JMO A;  1R8M E;  1PBV A;  1S9D E;  4C7P A;  4KN4 X;  4KMU X;  4FHR B;  2K6X A;  4A4P A;  2R09 A;  3LTL A;  3HJL A;  1R8Q E;  4D7R A;  1R8S E;  4FQ0 C;  4JK1 X;  1XT0 B;  1XSZ A;  3L8N A;  4OIY A;  3TW5 A;  1KU1 A;  3SOH B;  4C0A A;  3SWV A;  4L5M A;  4JWL A;  3USW A;  3AJC A;  2R0D A;  1LKV X;  1Q8D A;  3USY A;  4JXH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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