3C75L

Paracoccus versutus methylamine dehydrogenase in complex with amicyanin
Total Genus 32
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
32
Knots found
sequence length
125
structure length
124
Chain Sequence
VDPRAKWQPQDNDIQACDYWRHCSIDGNICDCSGGSLTNCPPGTKLATASVASCYNPTDGQSYLIAYRDCCGYNVSGRCPCLNTEGELPVYRPEFANDIIWCFGAEDDAMTYHCTISPIVGKAS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural comparison of crystal and solution states of the 138 kDa complex of methylamine dehydrogenase and amicyanin from Paracoccus versutus.
pubmed doi rcsb
molecule tags Oxidoreductase
molecule keywords Methylamine dehydrogenase heavy chain
total genus 32
structure length 124
sequence length 125
chains with identical sequence M
other databases KnotProt 2.0: K
ec nomenclature ec 1.4.9.1: Methylamine dehydrogenase (amicyanin).
pdb deposition date 2008-02-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
L PF02975 Me-amine-dh_L Methylamine dehydrogenase, L chain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.30.10 Mainly Beta Sandwich Electron Transport Ethylamine Dehydrogenase Methylamine/Aralkylamine dehydrogenase light chain 3c75L00
2AGXD 3SXTC 2I0SD 4Y5RC 2HJBD 3PXWC 4FANC 2OK6D 4L3HC 4FA9C 2AH0D 2MTAL 3SJLC 2HKMD 1MG2B 2OK4D 2HXCD 2OIZD 3C75L 2BBKL 1MG3B 2I0RD 2IUVD 4FA4C 3L4MC 2H3XB 2HKRD 2AGLD 2J55L 3PXSC 3RMZC 1MDAL 2J57K 2GC7B 4O1QC 4FA1C 2AH1D 4FAVC 2OJYD 2IURD 2HJ4D 1MAFL 4K3IC 2AGWD 2J56L 3RN0C 2AGZD 4FB1C 2GC4B 3RN1C 2I0TD 2IUQD 3L4OC 3SVWC 2MADL 3RLMC 2AGYD 2IUPD 4L3GC 3ORVC 3PXTC 3SWSC 3SLEC 4FA5C 2IAAB 2H47B 4L1QC 1MAEL 2Q7QD
chains in the Genus database with same CATH superfamily
2AGXD 3SXTC 2I0SD 4Y5RC 2HJBD 3PXWC 4FANC 2OK6D 4L3HC 4FA9C 2AH0D 2MTAL 3SJLC 2HKMD 1MG2B 2OK4D 2HXCD 2OIZD 3C75L 2BBKL 1MG3B 2I0RD 2IUVD 4FA4C 3L4MC 2H3XB 2HKRD 2AGLD 2J55L 3PXSC 3RMZC 1MDAL 2J57K 2GC7B 4O1QC 4FA1C 2AH1D 4FAVC 2OJYD 2IURD 2HJ4D 1MAFL 4K3IC 2AGWD 2J56L 3RN0C 2AGZD 4FB1C 2GC4B 3RN1C 2I0TD 2IUQD 3L4OC 3SVWC 2MADL 3RLMC 2AGYD 2IUPD 4L3GC 3ORVC 3PXTC 3SWSC 3SLEC 4FA5C 2IAAB 2H47B 4L1QC 1MAEL 2Q7QD
chains in the Genus database with same CATH topology
2AGXD 3SXTC 2I0SD 4Y5RC 2HJBD 3PXWC 4FANC 2OK6D 4L3HC 4FA9C 2AH0D 2MTAL 3SJLC 2HKMD 1MG2B 2OK4D 2HXCD 2OIZD 3C75L 2BBKL 1MG3B 2I0RD 2IUVD 4FA4C 3L4MC 2H3XB 2HKRD 2AGLD 2J55L 3PXSC 3RMZC 1MDAL 2J57K 2GC7B 4O1QC 4FA1C 2AH1D 4FAVC 2OJYD 2IURD 2HJ4D 1MAFL 4K3IC 2AGWD 2J56L 3RN0C 2AGZD 4FB1C 2GC4B 3RN1C 2I0TD 2IUQD 3L4OC 3SVWC 2MADL 3RLMC 2AGYD 2IUPD 4L3GC 3ORVC 3PXTC 3SWSC 3SLEC 4FA5C 2IAAB 2H47B 4L1QC 1MAEL 2Q7QD
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2AGX D;  3SXT C;  2I0S D;  4Y5R C;  2HJB D;  3PXW C;  4FAN C;  2OK6 D;  4L3H C;  4FA9 C;  2AH0 D;  2MTA L;  3SJL C;  2HKM D;  1MG2 B;  2OK4 D;  2HXC D;  2OIZ D;  3C75 L;  2BBK L;  1MG3 B;  2I0R D;  2IUV D;  4FA4 C;  3L4M C;  2H3X B;  2HKR D;  2AGL D;  2J55 L;  3PXS C;  3RMZ C;  1MDA L;  2J57 K;  2GC7 B;  4O1Q C;  4FA1 C;  2AH1 D;  4FAV C;  2OJY D;  2IUR D;  2HJ4 D;  1MAF L;  4K3I C;  2AGW D;  2J56 L;  3RN0 C;  2AGZ D;  4FB1 C;  2GC4 B;  3RN1 C;  2I0T D;  2IUQ D;  3L4O C;  3SVW C;  2MAD L;  3RLM C;  2AGY D;  2IUP D;  4L3G C;  3ORV C;  3PXT C;  3SWS C;  3SLE C;  4FA5 C;  2IAA B;  2H47 B;  4L1Q C;  1MAE L;  2Q7Q D; 
#chains in the Genus database with same CATH topology
 2AGX D;  3SXT C;  2I0S D;  4Y5R C;  2HJB D;  3PXW C;  4FAN C;  2OK6 D;  4L3H C;  4FA9 C;  2AH0 D;  2MTA L;  3SJL C;  2HKM D;  1MG2 B;  2OK4 D;  2HXC D;  2OIZ D;  3C75 L;  2BBK L;  1MG3 B;  2I0R D;  2IUV D;  4FA4 C;  3L4M C;  2H3X B;  2HKR D;  2AGL D;  2J55 L;  3PXS C;  3RMZ C;  1MDA L;  2J57 K;  2GC7 B;  4O1Q C;  4FA1 C;  2AH1 D;  4FAV C;  2OJY D;  2IUR D;  2HJ4 D;  1MAF L;  4K3I C;  2AGW D;  2J56 L;  3RN0 C;  2AGZ D;  4FB1 C;  2GC4 B;  3RN1 C;  2I0T D;  2IUQ D;  3L4O C;  3SVW C;  2MAD L;  3RLM C;  2AGY D;  2IUP D;  4L3G C;  3ORV C;  3PXT C;  3SWS C;  3SLE C;  4FA5 C;  2IAA B;  2H47 B;  4L1Q C;  1MAE L;  2Q7Q D; 
#chains in the Genus database with same CATH homology
 2AGX D;  3SXT C;  2I0S D;  4Y5R C;  2HJB D;  3PXW C;  4FAN C;  2OK6 D;  4L3H C;  4FA9 C;  2AH0 D;  2MTA L;  3SJL C;  2HKM D;  1MG2 B;  2OK4 D;  2HXC D;  2OIZ D;  3C75 L;  2BBK L;  1MG3 B;  2I0R D;  2IUV D;  4FA4 C;  3L4M C;  2H3X B;  2HKR D;  2AGL D;  2J55 L;  3PXS C;  3RMZ C;  1MDA L;  2J57 K;  2GC7 B;  4O1Q C;  4FA1 C;  2AH1 D;  4FAV C;  2OJY D;  2IUR D;  2HJ4 D;  1MAF L;  4K3I C;  2AGW D;  2J56 L;  3RN0 C;  2AGZ D;  4FB1 C;  2GC4 B;  3RN1 C;  2I0T D;  2IUQ D;  3L4O C;  3SVW C;  2MAD L;  3RLM C;  2AGY D;  2IUP D;  4L3G C;  3ORV C;  3PXT C;  3SWS C;  3SLE C;  4FA5 C;  2IAA B;  2H47 B;  4L1Q C;  1MAE L;  2Q7Q D; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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