4A4PA

Crystal structure of the sec7 domain from human cytohesin1
Total Genus 70
20406080100120140160180010203040506070
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
70
sequence length
186
structure length
186
Chain Sequence
NKQVAMGRKKFNMDPKKGIQFLIENDLLKNTCEDIAQFLYKGEGLNKTAIGDYLGERDEFNIQVLHAFVELHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCQCNNGVFQSTDTCYVLSFAIIMLNTSLHNPNVKDKPTVERFIAMNRGINDGGDLPEELLRNLYESIKNEPFKIPE
2040608010012014016018015010050
010203040506070Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH2 (81-91)AH7 (162-179)TVIII2 (182-185)O1 (95-97)TVIII1 (92-95)AH3 (98-107)AH5 (125-137)AH4 (113-121)TII3 (180-183)TII2 (140-143)AH6 (145-155)EMPTYTIV2 (184-187)AH1 (67-79)TII1 (108-111)Updating...
connected with : NaN
molecule tags Signaling protein
source organism Homo sapiens
publication title Crystal Structure of the Sec7 Domain from Human Cytohesin1
rcsb
molecule keywords CYTOHESIN1
total genus 70
structure length 186
sequence length 186
chains with identical sequence B
ec nomenclature
pdb deposition date 2011-10-19
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.220.20 Mainly Alpha Orthogonal Bundle Annexin V; domain 1 Annexin V; domain 1 4a4pA01
1.10.1000.11 Mainly Alpha Orthogonal Bundle Arf Nucleotide-binding Site Opener; domain 2 Arf Nucleotide-binding Site Opener,domain 2 4a4pA02
1RE0B 2R0DA 4JMIA 4JWLA 4A4PA 1R8ME 2R09A 1PBVA 3LTLA 1BC9A 4C0AA 1R8SE 4OIYA 4C7PA 4L5MA 4Z21A 1XT0B 1S9DE 4D7QA 3SWVA 1XSZA 4JMOA 3L8NA 4D7RA 1R8QE 1KU1A 4JXHA
chains in the Genus database with same CATH superfamily
1HVFA 4A4PA 1R8ME 1W45A 3LTLA 1AOWA 2H0MA 2XO2A 1BC1A 4L5MA 2K6XA 1HVGA 2II2A 1QC7A 1UPTB 3HJLA 3USYA 1HAKA 1R4AE 3ABOA 1HM6A 2RANA 1YJ0A 1YCNA 1SAVA 1N00A 3TW5A 1BCZA 2R09A 1BC9A 1R8SE 4OIYA 1AIIA 4C7PA 1ANNA 2IICA 1XT0B 1S9DE 1Q8DA 1AVRA 3L8NA 1C1KA 2IE7A 4KN4X 3BRXA 2H0KA 2XO3A 1A8BA 2VXGA 1HVEA 4Q2SA 1DM5A 1DK5A 4JK1X 1W7BA 1ANXA 4JWLA 2H0LA 1YGMA 3AO0A 2QEZA 1AVCA 3ANYA 3ABSA 1LKVX 4MDUA 2OY9A 4MDVA 1BC0A 2IE6A 2HYWA 2Q4CA 1W3WA 3ABQA 4FHRB 1BC3A 1R8QE 2ZHJA 1BCWA 4EVFA 4EVHA 1BCYA 1M9IA 4KMUX 1YIIA 1ALAA 1AEIA 1RE0B 2R0DA 3ABRA 4JMIA 3SOHB 1MCXA 1PBVA 4C0AA 4X9PA 1XJLA 4Z21A 2HYUA 3AJCA 1ANWA 4D7QA 3SWVA 1XSZA 4FQ0C 4JMOA 1A8AA 1BO9A 1N41A 2ZHIA 1HVDA 1I4AA 1AXNA 1AVHA 4D7RA 1N44A 1G5NA 1KU1A 3USWA 1N42A 4KN7X 2HSNA 2ZOCA 4JXHA 2HYVA 4HREA
chains in the Genus database with same CATH topology
1RE0B 2R0DA 3TW5A 4JMIA 4JWLA 3SOHB 4A4PA 1R8ME 2R09A 1PBVA 3LTLA 1BC9A 4C0AA 1R8SE 4OIYA 4C7PA 4L5MA 4Z21A 2K6XA 3AJCA 1XT0B 1LKVX 1S9DE 4D7QA 3SWVA 1XSZA 1Q8DA 4FQ0C 4JMOA 3L8NA 1QC7A 3HJLA 3USYA 4KN4X 4FHRB 4D7RA 1R8QE 1KU1A 4KMUX 3USWA 4KN7X 2HSNA 4JXHA 4JK1X
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1RE0 B;  2R0D A;  4JMI A;  4JWL A;  4A4P A;  1R8M E;  2R09 A;  1PBV A;  3LTL A;  1BC9 A;  4C0A A;  1R8S E;  4OIY A;  4C7P A;  4L5M A;  4Z21 A;  1XT0 B;  1S9D E;  4D7Q A;  3SWV A;  1XSZ A;  4JMO A;  3L8N A;  4D7R A;  1R8Q E;  1KU1 A;  4JXH A; 
#chains in the Genus database with same CATH topology
 1HVF A;  4A4P A;  1R8M E;  1W45 A;  3LTL A;  1AOW A;  2H0M A;  2XO2 A;  1BC1 A;  4L5M A;  2K6X A;  1HVG A;  2II2 A;  1QC7 A;  1UPT B;  3HJL A;  3USY A;  1HAK A;  1R4A E;  3ABO A;  1HM6 A;  2RAN A;  1YJ0 A;  1YCN A;  1SAV A;  1N00 A;  3TW5 A;  1BCZ A;  2R09 A;  1BC9 A;  1R8S E;  4OIY A;  1AII A;  4C7P A;  1ANN A;  2IIC A;  1XT0 B;  1S9D E;  1Q8D A;  1AVR A;  3L8N A;  1C1K A;  2IE7 A;  4KN4 X;  3BRX A;  2H0K A;  2XO3 A;  1A8B A;  2VXG A;  1HVE A;  4Q2S A;  1DM5 A;  1DK5 A;  4JK1 X;  1W7B A;  1ANX A;  4JWL A;  2H0L A;  1YGM A;  3AO0 A;  2QEZ A;  1AVC A;  3ANY A;  3ABS A;  1LKV X;  4MDU A;  2OY9 A;  4MDV A;  1BC0 A;  2IE6 A;  2HYW A;  2Q4C A;  1W3W A;  3ABQ A;  4FHR B;  1BC3 A;  1R8Q E;  2ZHJ A;  1BCW A;  4EVF A;  4EVH A;  1BCY A;  1M9I A;  4KMU X;  1YII A;  1ALA A;  1AEI A;  1RE0 B;  2R0D A;  3ABR A;  4JMI A;  3SOH B;  1MCX A;  1PBV A;  4C0A A;  4X9P A;  1XJL A;  4Z21 A;  2HYU A;  3AJC A;  1ANW A;  4D7Q A;  3SWV A;  1XSZ A;  4FQ0 C;  4JMO A;  1A8A A;  1BO9 A;  1N41 A;  2ZHI A;  1HVD A;  1I4A A;  1AXN A;  1AVH A;  4D7R A;  1N44 A;  1G5N A;  1KU1 A;  3USW A;  1N42 A;  4KN7 X;  2HSN A;  2ZOC A;  4JXH A;  2HYV A;  4HRE A; 
#chains in the Genus database with same CATH homology
 1RE0 B;  2R0D A;  3TW5 A;  4JMI A;  4JWL A;  3SOH B;  4A4P A;  1R8M E;  2R09 A;  1PBV A;  3LTL A;  1BC9 A;  4C0A A;  1R8S E;  4OIY A;  4C7P A;  4L5M A;  4Z21 A;  2K6X A;  3AJC A;  1XT0 B;  1LKV X;  1S9D E;  4D7Q A;  3SWV A;  1XSZ A;  1Q8D A;  4FQ0 C;  4JMO A;  3L8N A;  1QC7 A;  3HJL A;  3USY A;  4KN4 X;  4FHR B;  4D7R A;  1R8Q E;  1KU1 A;  4KMU X;  3USW A;  4KN7 X;  2HSN A;  4JXH A;  4JK1 X; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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