4FHR | Genus

Total Genus 79

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	79
sequence length	215
structure length	208
Chain Sequence	HMDPVQLVNFLQSEHPQTIAVVLSYLDPPVAAQILGALPEELQTEVLKRIALLERTSPEVVKEIERNLEKKISGFVGGIDTAAEIMNNLDRTTEKKIMDKLVQENPELADEIRRRMFVFEDILKLDDRSIQLVLREVDTRDLALALKGASDELKEKIFKNMSKRAAALLKDELEYMGPVRLKDVEEAQQKIINIIRRLEEAGEIVIAR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

loadScript /static/js/j2s/core/package.js

loadScript /static/js/j2s/core/corejmol.z.js

loadScript /static/js/j2s/core/corescript.z.js

JSmol exec jmolApplet0 start applet null

Jmol JavaScript applet jmolApplet0__38810524022539__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jmolApplet0__38810524022539__)

vwrOptions:

{ "name":"jmolApplet0","applet":true,"documentBase":"https://genus.fuw.edu.pl/view/4FHR/B/","platform":"J.awtjs2d.Platform","fullName":"jmolApplet0__38810524022539__","codePath":"https:/static/js/j2s/","display":"jmolApplet0_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"38810524022539","bgcolor":"white" }

setting document base to "https://genus.fuw.edu.pl/view/4FHR/B/"

Jmol Version: 14.29.13 2018-04-17 17:17

java.vendor: Java2Script (HTML5)

java.version: 2018-01-28 23:38:52 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

Access: ALL

memory: 0.0/0.0

processors available: 1

useCommandThread: false

appletId:jmolApplet0 (signed)

Jmol getValue emulate null

defaults = "Jmol"

Jmol getValue boxbgcolor null

Jmol getValue bgcolor white

backgroundColor = "white"

Jmol getValue ANIMFRAMECallback null

Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY

Jmol getValue ATOMMOVEDCallback null

Jmol getValue AUDIOCallback null

Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

Jmol getValue ECHOCallback null

Jmol getValue ERRORCallback null

Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

Jmol getValue MESSAGECallback null

Jmol getValue MINIMIZATIONCallback null

Jmol getValue SERVICECallback null

Jmol getValue PICKCallback null

Jmol getValue RESIZECallback null

Jmol getValue SCRIPTCallback null

Jmol getValue SYNCCallback null

Jmol getValue STRUCTUREMODIFIEDCallback null

Jmol getValue doTranslate null

language=en_US

Jmol getValue popupMenu null

Jmol getValue script null

Jmol getValue loadInline null

Jmol getValue load null

Jmol applet jmolApplet0__38810524022539__ ready

script 1 started

platformSpeed = 8

Viewer cachePut cache://localLOAD_/file/5d00068a43e90330224fe518/pdb.gz

Viewer cachePut https://genus.fuw.edu.pl/file/5d00068a43e90330224fe518/pdb.gz

FileManager.getAtomSetCollectionFromFile(/file/5d00068a43e90330224fe518/pdb.gz)

loadScript /static/js/j2s/core/corezip.z.js

The Resolver thinks Pdb

loadScript /static/js/j2s/core/corebio.z.js

Time for openFile(/file/5d00068a43e90330224fe518/pdb.gz): 601 ms

reading 208 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

208 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 21 ms

Adding embedded #jmolscript: select ({0:207});backbone only;select *;

platformSpeed = 8

cartoonsFancy = true

sheetSmoothing = 1.0

traceAlpha = true

loadScript /static/js/j2s/core/corescriptcmd.z.js

specularPower = 9

ambientPercent = 20

antialiasDisplay = true

Script completed

Jmol script terminated

loadScript /static/js/j2s/J/g3d/HermiteRenderer.js

loadScript /static/js/j2s/J/renderbio/BioMeshRenderer.js

loadScript /static/js/j2s/J/render/MeshRenderer.js

loadScript /static/js/j2s/J/shape/Mesh.js

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Motor protein
source organism	Thermotoga maritima
publication title	Structure of flagellar motor proteins in complex allows for insights into motor structure and switching. pubmed doi rcsb
molecule keywords	Flagellar motor switch protein FliM
total genus	79
structure length	208
sequence length	215
ec nomenclature
pdb deposition date	2012-06-06

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
B	PF01706	FliG_C	FliG C-terminal domain
B	PF14841	FliG_M	FliG middle domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.220.30	Mainly Alpha	Orthogonal Bundle	Annexin V; domain 1	Annexin V; domain 1	4fhrB02
1.10.220.30	Mainly Alpha	Orthogonal Bundle	Annexin V; domain 1	Annexin V; domain 1	4fhrB01

3SOHB 1LKVX 3USYA 3HJLA 4FQ0C 1QC7A 3USWA 3AJCA 4FHRB
chains in the Genus database with same CATH superfamily

2HYVA 4D7QA 1N42A 3ABSA 1YIIA 2OY9A 3HJLA 1HM6A 4EVFA 2HSNA 1BO9A 1YCNA 4KN4X 4L5MA 1AVRA 1PBVA 4Q2SA 2H0LA 1LKVX 2XO2A 3SOHB 4JK1X 4C0AA 1SAVA 1BCYA 1R8ME 2R09A 1KU1A 4MDVA 4OIYA 1DM5A 1R8SE 1XT0B 1BC3A 2II2A 1N41A 1N44A 4KMUX 1MCXA 2XO3A 2ZHIA 3LTLA 1M9IA 1BCZA 1BC9A 4C7PA 1HVEA 2Q4CA 2QEZA 4X9PA 4FHRB 1AIIA 1A8AA 3TW5A 4D7RA 1AXNA 1XJLA 3USWA 1ANXA 1BC0A 1HVDA 1YGMA 1XSZA 1R8QE 1W45A 2R0DA 2VXGA 1QC7A 2ZOCA 1ANWA 1HAKA 1AOWA 1Q8DA 4A4PA 1HVFA 1W7BA 2H0MA 4JMIA 4FQ0C 2HYWA 2K6XA 1C1KA 2HYUA 3ABOA 1R4AE 1BCWA 1HVGA 1BC1A 3BRXA 1UPTB 1AVCA 1I4AA 4HREA 4JWLA 2IE7A 3AJCA 1A8BA 3L8NA 1S9DE 2IE6A 1RE0B 3SWVA 1YJ0A 3ABQA 4JMOA 1ANNA 1ALAA 1W3WA 4KN7X 1G5NA 4Z21A 3AO0A 2H0KA 4JXHA 2RANA 4MDUA 2ZHJA 4EVHA 1DK5A 3ABRA 1AEIA 1N00A 3ANYA 1AVHA 2IICA 3USYA
chains in the Genus database with same CATH topology

1R8ME 2R09A 4D7QA 2R0DA 3HJLA 1KU1A 1QC7A 4OIYA 1R8SE 1XT0B 1Q8DA 3L8NA 4A4PA 2HSNA 1S9DE 1RE0B 4JMIA 4FQ0C 4KMUX 4KN4X 4L5MA 3SWVA 2K6XA 3LTLA 1PBVA 1BC9A 4C7PA 4JMOA 1LKVX 4KN7X 4Z21A 4JXHA 4FHRB 3SOHB 4JK1X 3TW5A 4D7RA 4C0AA 3USWA 4JWLA 1XSZA 1R8QE 3AJCA 3USYA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 3SOH B;  1LKV X;  3USY A;  3HJL A;  4FQ0 C;  1QC7 A;  3USW A;  3AJC A;  4FHR B; 
#chains in the Genus database with same CATH topology
 2HYV A;  4D7Q A;  1N42 A;  3ABS A;  1YII A;  2OY9 A;  3HJL A;  1HM6 A;  4EVF A;  2HSN A;  1BO9 A;  1YCN A;  4KN4 X;  4L5M A;  1AVR A;  1PBV A;  4Q2S A;  2H0L A;  1LKV X;  2XO2 A;  3SOH B;  4JK1 X;  4C0A A;  1SAV A;  1BCY A;  1R8M E;  2R09 A;  1KU1 A;  4MDV A;  4OIY A;  1DM5 A;  1R8S E;  1XT0 B;  1BC3 A;  2II2 A;  1N41 A;  1N44 A;  4KMU X;  1MCX A;  2XO3 A;  2ZHI A;  3LTL A;  1M9I A;  1BCZ A;  1BC9 A;  4C7P A;  1HVE A;  2Q4C A;  2QEZ A;  4X9P A;  4FHR B;  1AII A;  1A8A A;  3TW5 A;  4D7R A;  1AXN A;  1XJL A;  3USW A;  1ANX A;  1BC0 A;  1HVD A;  1YGM A;  1XSZ A;  1R8Q E;  1W45 A;  2R0D A;  2VXG A;  1QC7 A;  2ZOC A;  1ANW A;  1HAK A;  1AOW A;  1Q8D A;  4A4P A;  1HVF A;  1W7B A;  2H0M A;  4JMI A;  4FQ0 C;  2HYW A;  2K6X A;  1C1K A;  2HYU A;  3ABO A;  1R4A E;  1BCW A;  1HVG A;  1BC1 A;  3BRX A;  1UPT B;  1AVC A;  1I4A A;  4HRE A;  4JWL A;  2IE7 A;  3AJC A;  1A8B A;  3L8N A;  1S9D E;  2IE6 A;  1RE0 B;  3SWV A;  1YJ0 A;  3ABQ A;  4JMO A;  1ANN A;  1ALA A;  1W3W A;  4KN7 X;  1G5N A;  4Z21 A;  3AO0 A;  2H0K A;  4JXH A;  2RAN A;  4MDU A;  2ZHJ A;  4EVH A;  1DK5 A;  3ABR A;  1AEI A;  1N00 A;  3ANY A;  1AVH A;  2IIC A;  3USY A; 
#chains in the Genus database with same CATH homology
 1R8M E;  2R09 A;  4D7Q A;  2R0D A;  3HJL A;  1KU1 A;  1QC7 A;  4OIY A;  1R8S E;  1XT0 B;  1Q8D A;  3L8N A;  4A4P A;  2HSN A;  1S9D E;  1RE0 B;  4JMI A;  4FQ0 C;  4KMU X;  4KN4 X;  4L5M A;  3SWV A;  2K6X A;  3LTL A;  1PBV A;  1BC9 A;  4C7P A;  4JMO A;  1LKV X;  4KN7 X;  4Z21 A;  4JXH A;  4FHR B;  3SOH B;  4JK1 X;  3TW5 A;  4D7R A;  4C0A A;  3USW A;  4JWL A;  1XSZ A;  1R8Q E;  3AJC A;  3USY A;

...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)

...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

4FHRB

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations