4L3GC

Crystal structure of the e113q-maug/pre-methylamine dehydrogenase complex aged 120 days
Total Genus 31
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
31
Knots found
sequence length
125
structure length
124
Chain Sequence
TDPRAKWVPQDNDIQACDYWRHCSIDGNICDCSGGSLTNCPPGTKLATASVASCYNPTDGQSYLIAYRDCCGYNVSGRCPCLNTEGELPVYRPEFANDIIWCFGAEDDAMTYHCTISPIVGKAS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Carboxyl Group of Glu113 Is Required for Stabilization of the Diferrous and Bis-Fe(IV) States of MauG.
pubmed doi rcsb
molecule tags Oxidoreductase
source organism Paracoccus denitrificans
molecule keywords Methylamine utilization protein MauG
total genus 31
structure length 124
sequence length 125
chains with identical sequence E
other databases KnotProt 2.0: K
ec nomenclature ec 1.4.99.3: Transferred entry: 1.4.9.1.
pdb deposition date 2013-06-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF02975 Me-amine-dh_L Methylamine dehydrogenase, L chain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.30.10 Mainly Beta Sandwich Electron Transport Ethylamine Dehydrogenase Methylamine/Aralkylamine dehydrogenase light chain 4l3gC00
2HXCD 2IURD 3PXSC 3SJLC 2MADL 3RN1C 4K3IC 3SLEC 2AH1D 2OJYD 4L3GC 3L4MC 4FANC 1MAFL 2Q7QD 4L3HC 1MG2B 2OK6D 2J55L 2AGLD 2BBKL 2AGXD 2IAAB 4FA4C 3RLMC 3ORVC 3SVWC 2GC4B 2IUQD 2HJBD 4L1QC 1MG3B 2I0SD 2GC7B 2AGZD 2J57K 3L4OC 4FA9C 4Y5RC 2MTAL 2AH0D 4FAVC 3PXTC 2H3XB 1MDAL 3RMZC 2I0TD 2HKMD 2J56L 4FB1C 2IUPD 2OIZD 4FA5C 3SXTC 2OK4D 2H47B 2IUVD 3RN0C 4O1QC 2HJ4D 3PXWC 3C75L 3SWSC 4FA1C 2AGWD 2I0RD 2AGYD 1MAEL 2HKRD
chains in the Genus database with same CATH superfamily
2HXCD 2IURD 3PXSC 3SJLC 2MADL 3RN1C 4K3IC 3SLEC 2AH1D 2OJYD 4L3GC 3L4MC 4FANC 1MAFL 2Q7QD 4L3HC 1MG2B 2OK6D 2J55L 2AGLD 2BBKL 2AGXD 2IAAB 4FA4C 3RLMC 3ORVC 3SVWC 2GC4B 2IUQD 2HJBD 4L1QC 1MG3B 2I0SD 2GC7B 2AGZD 2J57K 3L4OC 4FA9C 4Y5RC 2MTAL 2AH0D 4FAVC 3PXTC 2H3XB 1MDAL 3RMZC 2I0TD 2HKMD 2J56L 4FB1C 2IUPD 2OIZD 4FA5C 3SXTC 2OK4D 2H47B 2IUVD 3RN0C 4O1QC 2HJ4D 3PXWC 3C75L 3SWSC 4FA1C 2AGWD 2I0RD 2AGYD 1MAEL 2HKRD
chains in the Genus database with same CATH topology
2HXCD 2IURD 3PXSC 3SJLC 2MADL 3RN1C 4K3IC 3SLEC 2AH1D 2OJYD 4L3GC 3L4MC 4FANC 1MAFL 2Q7QD 4L3HC 1MG2B 2OK6D 2J55L 2AGLD 2BBKL 2AGXD 2IAAB 4FA4C 3RLMC 3ORVC 3SVWC 2GC4B 2IUQD 2HJBD 4L1QC 1MG3B 2I0SD 2GC7B 2AGZD 2J57K 3L4OC 4FA9C 4Y5RC 2MTAL 2AH0D 4FAVC 3PXTC 2H3XB 1MDAL 3RMZC 2I0TD 2HKMD 2J56L 4FB1C 2IUPD 2OIZD 4FA5C 3SXTC 2OK4D 2H47B 2IUVD 3RN0C 4O1QC 2HJ4D 3PXWC 3C75L 3SWSC 4FA1C 2AGWD 2I0RD 2AGYD 1MAEL 2HKRD
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2HXC D;  2IUR D;  3PXS C;  3SJL C;  2MAD L;  3RN1 C;  4K3I C;  3SLE C;  2AH1 D;  2OJY D;  4L3G C;  3L4M C;  4FAN C;  1MAF L;  2Q7Q D;  4L3H C;  1MG2 B;  2OK6 D;  2J55 L;  2AGL D;  2BBK L;  2AGX D;  2IAA B;  4FA4 C;  3RLM C;  3ORV C;  3SVW C;  2GC4 B;  2IUQ D;  2HJB D;  4L1Q C;  1MG3 B;  2I0S D;  2GC7 B;  2AGZ D;  2J57 K;  3L4O C;  4FA9 C;  4Y5R C;  2MTA L;  2AH0 D;  4FAV C;  3PXT C;  2H3X B;  1MDA L;  3RMZ C;  2I0T D;  2HKM D;  2J56 L;  4FB1 C;  2IUP D;  2OIZ D;  4FA5 C;  3SXT C;  2OK4 D;  2H47 B;  2IUV D;  3RN0 C;  4O1Q C;  2HJ4 D;  3PXW C;  3C75 L;  3SWS C;  4FA1 C;  2AGW D;  2I0R D;  2AGY D;  1MAE L;  2HKR D; 
#chains in the Genus database with same CATH topology
 2HXC D;  2IUR D;  3PXS C;  3SJL C;  2MAD L;  3RN1 C;  4K3I C;  3SLE C;  2AH1 D;  2OJY D;  4L3G C;  3L4M C;  4FAN C;  1MAF L;  2Q7Q D;  4L3H C;  1MG2 B;  2OK6 D;  2J55 L;  2AGL D;  2BBK L;  2AGX D;  2IAA B;  4FA4 C;  3RLM C;  3ORV C;  3SVW C;  2GC4 B;  2IUQ D;  2HJB D;  4L1Q C;  1MG3 B;  2I0S D;  2GC7 B;  2AGZ D;  2J57 K;  3L4O C;  4FA9 C;  4Y5R C;  2MTA L;  2AH0 D;  4FAV C;  3PXT C;  2H3X B;  1MDA L;  3RMZ C;  2I0T D;  2HKM D;  2J56 L;  4FB1 C;  2IUP D;  2OIZ D;  4FA5 C;  3SXT C;  2OK4 D;  2H47 B;  2IUV D;  3RN0 C;  4O1Q C;  2HJ4 D;  3PXW C;  3C75 L;  3SWS C;  4FA1 C;  2AGW D;  2I0R D;  2AGY D;  1MAE L;  2HKR D; 
#chains in the Genus database with same CATH homology
 2HXC D;  2IUR D;  3PXS C;  3SJL C;  2MAD L;  3RN1 C;  4K3I C;  3SLE C;  2AH1 D;  2OJY D;  4L3G C;  3L4M C;  4FAN C;  1MAF L;  2Q7Q D;  4L3H C;  1MG2 B;  2OK6 D;  2J55 L;  2AGL D;  2BBK L;  2AGX D;  2IAA B;  4FA4 C;  3RLM C;  3ORV C;  3SVW C;  2GC4 B;  2IUQ D;  2HJB D;  4L1Q C;  1MG3 B;  2I0S D;  2GC7 B;  2AGZ D;  2J57 K;  3L4O C;  4FA9 C;  4Y5R C;  2MTA L;  2AH0 D;  4FAV C;  3PXT C;  2H3X B;  1MDA L;  3RMZ C;  2I0T D;  2HKM D;  2J56 L;  4FB1 C;  2IUP D;  2OIZ D;  4FA5 C;  3SXT C;  2OK4 D;  2H47 B;  2IUV D;  3RN0 C;  4O1Q C;  2HJ4 D;  3PXW C;  3C75 L;  3SWS C;  4FA1 C;  2AGW D;  2I0R D;  2AGY D;  1MAE L;  2HKR D; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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