4MDUA

Crystal structure of apo-annexin (sm)1
Total Genus 138
50100150200250300350020406080100120140
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
138
sequence length
357
structure length
357
Chain Sequence
SEFGITRSLIHSFDPHGKHYRPTIKPTTGFSASADAERLHRSMKGPGTNELAIINILARRTNYERQEICQSYKSLYKQDLKDDLKSDTSGDFRKVLCQLIVDTPYMLAKSLYYAMKGLGTNDRVLIEIFTTLWNDEMKAVADAYKQVLKDKGSEESERSLVTDMKKETCGDYEYALLSLVQAERDDIPILQLKAIPDKGVNSIINHELAEADAKDLYASGAGRVGTSERRITRVICNRTPYQLYLTSEIYFKMYGKTLLEHIESETSGDYRKLLVAVLRYAIDRPSLIAEWLHDSMAGLGTKDYALMRLLITRSEIDLQDIMDAYESIYGKSLLNAVKDDTSGDYRRTLCVLMGEIY
5010015020025030035035030025020015010050
020406080100120Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTI1 (7-10)AH13 (235-242)AH7 (128-136)TIV1 (9-12)TI2 (20-23)TIV7 (320-323)AH20 (349-359)AH17 (310-320)AH2 (56-64)TII1 (33-36)AH1 (38-48)AH3 (68-82)AH4 (86-93)AH5 (96-106)AH16 (274-301)AH8 (140-157)AH6 (109-122)TII'1 (305-308)O1 (126-128)TIV2 (123-126)TI3 (161-164)AH9 (166-169)AH10 (177-187)AH11 (195-200)TI4 (200-203)TIV4 (202-205)TI5 (206-209)TI6 (207-210)AH12 (212-224)TIV5 (228-231)AH15 (264-271)TIV6 (231-234)AH14 (246-260)AH18 (324-335)AH19 (339-346)TI7 (306-309)3H2 (173-175)3H1 (15-17)TVIII1 (28-31)Updating...
connected with : NaN
molecule tags Metal binding protein
source organism Schistosoma mansoni
publication title Crystal structure and immunological properties of the first annexin from Schistosoma mansoni: insights into the structural integrity of the schistosomal tegument.
pubmed doi rcsb
molecule keywords Annexin
total genus 138
structure length 357
sequence length 357
chains with identical sequence B
ec nomenclature
pdb deposition date 2013-08-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00191 Annexin Annexin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.220.10 Mainly Alpha Orthogonal Bundle Annexin V; domain 1 Annexin 4mduA04
1.10.220.10 Mainly Alpha Orthogonal Bundle Annexin V; domain 1 Annexin 4mduA01
1.10.220.10 Mainly Alpha Orthogonal Bundle Annexin V; domain 1 Annexin 4mduA02
1.10.220.10 Mainly Alpha Orthogonal Bundle Annexin V; domain 1 Annexin 4mduA03
1DM5A 1I4AA 1DK5A 2IE6A 2H0LA 2XO3A 1BO9A 1BCZA 2XO2A 2ZHIA 2IICA 1HVGA 1YCNA 4X9PA 1XJLA 1A8BA 1BC1A 2HYVA 1W45A 2II2A 1AEIA 1HAKA 1M9IA 1YIIA 1BC3A 2ZHJA 1HVFA 1YJ0A 1ANWA 1AVHA 1HVEA 1AIIA 1N41A 1W7BA 1ANNA 2IE7A 1BCWA 1G5NA 1BCYA 1N00A 1SAVA 1AVRA 1AOWA 2H0MA 4HREA 2Q4CA 1ANXA 4MDVA 2HYUA 4EVHA 1MCXA 1BC0A 1N44A 2HYWA 1W3WA 3BRXA 4MDUA 2RANA 1HM6A 2ZOCA 2H0KA 1AVCA 1AXNA 1ALAA 1N42A 1HVDA 4EVFA 1A8AA
chains in the Genus database with same CATH superfamily
3AJCA 1DK5A 2H0LA 1BO9A 4D7RA 1HAKA 1M9IA 1HVFA 1Q8DA 4OIYA 2IE7A 1BC9A 3AO0A 1AVRA 1LKVX 1BC0A 3BRXA 3USYA 4MDUA 1R4AE 2R09A 1HM6A 4JXHA 2H0KA 1AVCA 3L8NA 1AXNA 4EVFA 4FQ0C 1BCWA 1ANXA 1DM5A 1I4AA 2HSNA 2IE6A 4KMUX 2XO3A 3USWA 2ZHIA 1R8ME 1HVGA 1YCNA 1XT0B 1XJLA 1A8BA 1W45A 1UPTB 2K6XA 3ABQA 2VXGA 4JK1X 4C0AA 2II2A 1AIIA 1QC7A 4FHRB 1ANNA 3SOHB 4HREA 1AOWA 4JMOA 1S9DE 4D7QA 4A4PA 1RE0B 1N44A 3SWVA 3ABSA 1N42A 1HVDA 1AEIA 4Q2SA 1BCZA 1YGMA 2XO2A 1C1KA 2IICA 1R8QE 2HYVA 3LTLA 4KN4X 1BC3A 1R8SE 3HJLA 1YJ0A 1W7BA 1ANWA 1AVHA 1HVEA 4C7PA 1XSZA 1SAVA 4EVHA 4MDVA 1W3WA 2RANA 2R0DA 2QEZA 3ANYA 1ALAA 4X9PA 3TW5A 4Z21A 1BC1A 4KN7X 1PBVA 1YIIA 2ZHJA 1N41A 1G5NA 2H0MA 1BCYA 1N00A 2HYUA 1MCXA 4L5MA 2HYWA 4JWLA 2ZOCA 1KU1A 4JMIA 3ABOA 2OY9A 3ABRA 2Q4CA 1A8AA
chains in the Genus database with same CATH topology
1DM5A 1I4AA 1DK5A 2IE6A 2H0LA 2XO3A 1BO9A 1BCZA 2XO2A 2ZHIA 2IICA 1HVGA 1YCNA 4X9PA 1XJLA 1A8BA 1BC1A 2HYVA 1W45A 2II2A 1AEIA 1HAKA 1M9IA 1YIIA 1BC3A 2ZHJA 1HVFA 1YJ0A 1ANWA 1AVHA 1HVEA 1AIIA 1N41A 1W7BA 1ANNA 2IE7A 1BCWA 1G5NA 1BCYA 1N00A 1SAVA 1AVRA 1AOWA 2H0MA 4HREA 2Q4CA 1ANXA 4MDVA 2HYUA 4EVHA 1MCXA 1BC0A 1N44A 2HYWA 1W3WA 3BRXA 4MDUA 2RANA 1HM6A 2ZOCA 2H0KA 1AVCA 1AXNA 1ALAA 1N42A 1HVDA 4EVFA 1A8AA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1DM5 A;  1I4A A;  1DK5 A;  2IE6 A;  2H0L A;  2XO3 A;  1BO9 A;  1BCZ A;  2XO2 A;  2ZHI A;  2IIC A;  1HVG A;  1YCN A;  4X9P A;  1XJL A;  1A8B A;  1BC1 A;  2HYV A;  1W45 A;  2II2 A;  1AEI A;  1HAK A;  1M9I A;  1YII A;  1BC3 A;  2ZHJ A;  1HVF A;  1YJ0 A;  1ANW A;  1AVH A;  1HVE A;  1AII A;  1N41 A;  1W7B A;  1ANN A;  2IE7 A;  1BCW A;  1G5N A;  1BCY A;  1N00 A;  1SAV A;  1AVR A;  1AOW A;  2H0M A;  4HRE A;  2Q4C A;  1ANX A;  4MDV A;  2HYU A;  4EVH A;  1MCX A;  1BC0 A;  1N44 A;  2HYW A;  1W3W A;  3BRX A;  4MDU A;  2RAN A;  1HM6 A;  2ZOC A;  2H0K A;  1AVC A;  1AXN A;  1ALA A;  1N42 A;  1HVD A;  4EVF A;  1A8A A; 
#chains in the Genus database with same CATH topology
 3AJC A;  1DK5 A;  2H0L A;  1BO9 A;  4D7R A;  1HAK A;  1M9I A;  1HVF A;  1Q8D A;  4OIY A;  2IE7 A;  1BC9 A;  3AO0 A;  1AVR A;  1LKV X;  1BC0 A;  3BRX A;  3USY A;  4MDU A;  1R4A E;  2R09 A;  1HM6 A;  4JXH A;  2H0K A;  1AVC A;  3L8N A;  1AXN A;  4EVF A;  4FQ0 C;  1BCW A;  1ANX A;  1DM5 A;  1I4A A;  2HSN A;  2IE6 A;  4KMU X;  2XO3 A;  3USW A;  2ZHI A;  1R8M E;  1HVG A;  1YCN A;  1XT0 B;  1XJL A;  1A8B A;  1W45 A;  1UPT B;  2K6X A;  3ABQ A;  2VXG A;  4JK1 X;  4C0A A;  2II2 A;  1AII A;  1QC7 A;  4FHR B;  1ANN A;  3SOH B;  4HRE A;  1AOW A;  4JMO A;  1S9D E;  4D7Q A;  4A4P A;  1RE0 B;  1N44 A;  3SWV A;  3ABS A;  1N42 A;  1HVD A;  1AEI A;  4Q2S A;  1BCZ A;  1YGM A;  2XO2 A;  1C1K A;  2IIC A;  1R8Q E;  2HYV A;  3LTL A;  4KN4 X;  1BC3 A;  1R8S E;  3HJL A;  1YJ0 A;  1W7B A;  1ANW A;  1AVH A;  1HVE A;  4C7P A;  1XSZ A;  1SAV A;  4EVH A;  4MDV A;  1W3W A;  2RAN A;  2R0D A;  2QEZ A;  3ANY A;  1ALA A;  4X9P A;  3TW5 A;  4Z21 A;  1BC1 A;  4KN7 X;  1PBV A;  1YII A;  2ZHJ A;  1N41 A;  1G5N A;  2H0M A;  1BCY A;  1N00 A;  2HYU A;  1MCX A;  4L5M A;  2HYW A;  4JWL A;  2ZOC A;  1KU1 A;  4JMI A;  3ABO A;  2OY9 A;  3ABR A;  2Q4C A;  1A8A A; 
#chains in the Genus database with same CATH homology
 1DM5 A;  1I4A A;  1DK5 A;  2IE6 A;  2H0L A;  2XO3 A;  1BO9 A;  1BCZ A;  2XO2 A;  2ZHI A;  2IIC A;  1HVG A;  1YCN A;  4X9P A;  1XJL A;  1A8B A;  1BC1 A;  2HYV A;  1W45 A;  2II2 A;  1AEI A;  1HAK A;  1M9I A;  1YII A;  1BC3 A;  2ZHJ A;  1HVF A;  1YJ0 A;  1ANW A;  1AVH A;  1HVE A;  1AII A;  1N41 A;  1W7B A;  1ANN A;  2IE7 A;  1BCW A;  1G5N A;  1BCY A;  1N00 A;  1SAV A;  1AVR A;  1AOW A;  2H0M A;  4HRE A;  2Q4C A;  1ANX A;  4MDV A;  2HYU A;  4EVH A;  1MCX A;  1BC0 A;  1N44 A;  2HYW A;  1W3W A;  3BRX A;  4MDU A;  2RAN A;  1HM6 A;  2ZOC A;  2H0K A;  1AVC A;  1AXN A;  1ALA A;  1N42 A;  1HVD A;  4EVF A;  1A8A A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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