1AUZA

Solution structure of spoiiaa, a phosphorylatable component of the system that regulates transcription factor sigma-f of bacillus subtilis, nmr, 24 structures
Total Genus 19

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
116
structure length
116
Chain Sequence
SLGIDMNVKESVLCIRLTGELDHHTAETLKQKVTQSLEKDDIRHIVLNLEDLSFMDSSGLGVILGRYKQIKQIGGEMVVCAISPAVKRLFDMSGLFKIIRFEQSEQQALLTLGVAS

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S3 (44-52)TIV1 (8-11)EMPTYS4 (79-80)AH2 (58-71)TI1 (71-74)TI2 (83-86)AH3 (87-93)TIV6 (93-96)3H1 (96-98)TI3 (104-107)TIV7 (102-105)3H2 (109-111)TIV8 (103-106)TIV9 (105-108)S2 (12-19)S1 (6-9)TIV11 (111-114)AH1 (24-37)Updating...
connected with : NaN
molecule tags Transcription regulator
source organism Bacillus subtilis
publication title Solution structure of SpoIIAA, a phosphorylatable component of the system that regulates transcription factor sigmaF of Bacillus subtilis.
pubmed doi rcsb
molecule keywords SPOIIAA
total genus 19
structure length 116
sequence length 116
ec nomenclature
pdb deposition date 1997-09-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01740 STAS STAS domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.750.24 Alpha Beta 2-Layer Sandwich Transcription Regulator spoIIAA STAS domain 1auzA00
4HYLA 3OIRA 1T6RA 3NY7A 1AUZA 1BUZA 1SBOA 3IH8A 5EUWA 5EZBA 3T6OA 3OIZA 3F43A 1TIDB 3ZTBA 3MGLA 3IHAA 2VY9A 4QTPA 3LLOA 1TH8B 3ZXNA 3AGDA 3AGEA 4DGHA 1VC1A 2KA5A 1TILB 5EUXA 3IF5A 1H4YA 5EUZA 1H4XA 2KLNA 4XS5A 1H4ZA 4DGFA 3IH9A 3LKLA 5EUUA 3IHBA 1THNB 5EUSA
chains in the Genus database with same CATH superfamily
1FC7A 3OIRA 1V0EA 3MOGA 1FCFA 3GVJA 1SBOA 1BPLA 2B78A 3OIZA 3ZTBA 3VSEA 3GVLA 2ZO9B 4L8KA 4QTPA 3K50A 3LLOA 3JU4A 1N6DA 4AE2A 3AGEA 4DGHA 4HIZA 1H4YA 1H4XA 4XS5A 3QDQA 1H4ZA 4DGFA 2RRLA 3IHBA 4JC0A 1WXXA 3NY7A 4AEJA 3T6OA 1FC9A 3IHAA 2DXNA 1WXWA 3ZXNA 5EUXA 3IF5A 5EUZA 3V8VA 3IH9A 4HYLA 1T6RA 1FC6A 1AUZA 1K32A 3GHFA 4DMGA 3IH8A 3GVKA 5EUWA 5EZBA 3F43A 1TIDB 3MGLA 3D03A 2VY9A 1TH8B 1J7XA 1TILB 3DUPA 2ZOAA 1V0FA 1N6FA 3GK7A 2CWWA 1THNB 3C0KA 5EUSA 2DXLA 1BUZA 4L1CA 3DORA 3V97A 3D3UA 3LDFA 1N6EA 3AGDA 1VC1A 2KA5A 2KLNA 4GHNA 3GMFA 3EH7A 1HF2A 3LKLA 2OASA 2AS0A 5EUUA 3DJAA
chains in the Genus database with same CATH topology
4HYLA 3OIRA 1T6RA 3NY7A 1AUZA 1BUZA 1SBOA 3IH8A 5EUWA 5EZBA 3T6OA 3OIZA 3F43A 1TIDB 3ZTBA 3MGLA 3IHAA 2VY9A 4QTPA 3LLOA 1TH8B 3ZXNA 3AGDA 3AGEA 4DGHA 1VC1A 2KA5A 1TILB 5EUXA 3IF5A 1H4YA 5EUZA 1H4XA 2KLNA 4XS5A 1H4ZA 4DGFA 3IH9A 3LKLA 5EUUA 3IHBA 1THNB 5EUSA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4HYL A;  3OIR A;  1T6R A;  3NY7 A;  1AUZ A;  1BUZ A;  1SBO A;  3IH8 A;  5EUW A;  5EZB A;  3T6O A;  3OIZ A;  3F43 A;  1TID B;  3ZTB A;  3MGL A;  3IHA A;  2VY9 A;  4QTP A;  3LLO A;  1TH8 B;  3ZXN A;  3AGD A;  3AGE A;  4DGH A;  1VC1 A;  2KA5 A;  1TIL B;  5EUX A;  3IF5 A;  1H4Y A;  5EUZ A;  1H4X A;  2KLN A;  4XS5 A;  1H4Z A;  4DGF A;  3IH9 A;  3LKL A;  5EUU A;  3IHB A;  1THN B;  5EUS A; 
#chains in the Genus database with same CATH topology
 1FC7 A;  3OIR A;  1V0E A;  3MOG A;  1FCF A;  3GVJ A;  1SBO A;  1BPL A;  2B78 A;  3OIZ A;  3ZTB A;  3VSE A;  3GVL A;  2ZO9 B;  4L8K A;  4QTP A;  3K50 A;  3LLO A;  3JU4 A;  1N6D A;  4AE2 A;  3AGE A;  4DGH A;  4HIZ A;  1H4Y A;  1H4X A;  4XS5 A;  3QDQ A;  1H4Z A;  4DGF A;  2RRL A;  3IHB A;  4JC0 A;  1WXX A;  3NY7 A;  4AEJ A;  3T6O A;  1FC9 A;  3IHA A;  2DXN A;  1WXW A;  3ZXN A;  5EUX A;  3IF5 A;  5EUZ A;  3V8V A;  3IH9 A;  4HYL A;  1T6R A;  1FC6 A;  1AUZ A;  1K32 A;  3GHF A;  4DMG A;  3IH8 A;  3GVK A;  5EUW A;  5EZB A;  3F43 A;  1TID B;  3MGL A;  3D03 A;  2VY9 A;  1TH8 B;  1J7X A;  1TIL B;  3DUP A;  2ZOA A;  1V0F A;  1N6F A;  3GK7 A;  2CWW A;  1THN B;  3C0K A;  5EUS A;  2DXL A;  1BUZ A;  4L1C A;  3DOR A;  3V97 A;  3D3U A;  3LDF A;  1N6E A;  3AGD A;  1VC1 A;  2KA5 A;  2KLN A;  4GHN A;  3GMF A;  3EH7 A;  1HF2 A;  3LKL A;  2OAS A;  2AS0 A;  5EUU A;  3DJA A; 
#chains in the Genus database with same CATH homology
 4HYL A;  3OIR A;  1T6R A;  3NY7 A;  1AUZ A;  1BUZ A;  1SBO A;  3IH8 A;  5EUW A;  5EZB A;  3T6O A;  3OIZ A;  3F43 A;  1TID B;  3ZTB A;  3MGL A;  3IHA A;  2VY9 A;  4QTP A;  3LLO A;  1TH8 B;  3ZXN A;  3AGD A;  3AGE A;  4DGH A;  1VC1 A;  2KA5 A;  1TIL B;  5EUX A;  3IF5 A;  1H4Y A;  5EUZ A;  1H4X A;  2KLN A;  4XS5 A;  1H4Z A;  4DGF A;  3IH9 A;  3LKL A;  5EUU A;  3IHB A;  1THN B;  5EUS A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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