3T6OA

The structure of an anti-sigma-factor antagonist (stas) domain protein from planctomyces limnophilus.
Total Genus 29
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
29
sequence length
118
structure length
118
Chain Sequence
AMADIRVTHEAQVTVISFPAVFQRLRETEVEQIASTFLAAMQGAQPRKVLIDLEGVEFFGSSFIELLVRGWKRIKEDQQGVFALCSVSPYCVEVLQVTHIDEVWPRYSTKQEALLAMA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Sulfate transporter/antisigma-factor antagonist STAS
publication title The Structure of an Anti-sigma-factor antagonist (STAS) domain protein from Planctomyces limnophilus.
rcsb
source organism Planctomyces limnophilus
molecule tags Transport protein
total genus 29
structure length 118
sequence length 118
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2011-07-28
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.750.24 Alpha Beta 2-Layer Sandwich Transcription Regulator spoIIAA STAS domain 3t6oA00
5EUZA 4HYLA 4XS5A 2KA5A 4QTPA 3OIRA 5EZBA 3AGDA 1BUZA 2VY9A 1T6RA 4DGHA 1SBOA 3AGEA 3MGLA 1TILB 3LKLA 3F43A 3T6OA 3ZTBA 3IH9A 3IHAA 3OIZA 3LLOA 5EUUA 3IHBA 3NY7A 1TIDB 1H4ZA 3ZXNA 4DGFA 1H4XA 2KLNA 5EUSA 5EUXA 1AUZA 1THNB 3IF5A 1VC1A 3IH8A 1TH8B 1H4YA 5EUWA
chains in the Genus database with same CATH superfamily
3QDQA 4XS5A 4QTPA 3V97A 3MOGA 4L8KA 3AGEA 3MGLA 1HF2A 3LKLA 3F43A 3T6OA 3DORA 1WXXA 1BPLA 3IHBA 3GK7A 1H4ZA 3K50A 1AUZA 1N6EA 5EUWA 3GVLA 2KA5A 2AS0A 3GHFA 3OIRA 3D03A 1WXWA 2VY9A 4AE2A 3GMFA 1SBOA 3V8VA 2B78A 3ZTBA 2CWWA 5EUUA 3NY7A 1TIDB 1V0EA 3ZXNA 4DGFA 3GVJA 4DMGA 5EUSA 4JC0A 3LDFA 2ZOAA 1VC1A 1TH8B 1H4YA 4L1CA 3JU4A 5EUZA 4HYLA 2RRLA 1BUZA 3C0KA 3DJAA 1T6RA 1N6FA 4DGHA 4GHNA 4HIZA 2ZO9B 3GVKA 2DXLA 1K32A 3DUPA 1V0FA 1H4XA 1J7XA 5EUXA 1FC7A 1THNB 3IH8A 1FCFA 1FC6A 5EZBA 3AGDA 4AEJA 2DXNA 3EH7A 3D3UA 1TILB 3IH9A 3IHAA 3OIZA 1N6DA 3LLOA 2KLNA 3IF5A 1FC9A 3VSEA 2OASA
chains in the Genus database with same CATH topology
5EUZA 4HYLA 4XS5A 2KA5A 4QTPA 3OIRA 5EZBA 3AGDA 1BUZA 2VY9A 1T6RA 4DGHA 1SBOA 3AGEA 3MGLA 1TILB 3LKLA 3F43A 3T6OA 3ZTBA 3IH9A 3IHAA 3OIZA 3LLOA 5EUUA 3IHBA 3NY7A 1TIDB 1H4ZA 3ZXNA 4DGFA 1H4XA 2KLNA 5EUSA 5EUXA 1AUZA 1THNB 3IF5A 1VC1A 3IH8A 1TH8B 1H4YA 5EUWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5EUZ A;  4HYL A;  4XS5 A;  2KA5 A;  4QTP A;  3OIR A;  5EZB A;  3AGD A;  1BUZ A;  2VY9 A;  1T6R A;  4DGH A;  1SBO A;  3AGE A;  3MGL A;  1TIL B;  3LKL A;  3F43 A;  3T6O A;  3ZTB A;  3IH9 A;  3IHA A;  3OIZ A;  3LLO A;  5EUU A;  3IHB A;  3NY7 A;  1TID B;  1H4Z A;  3ZXN A;  4DGF A;  1H4X A;  2KLN A;  5EUS A;  5EUX A;  1AUZ A;  1THN B;  3IF5 A;  1VC1 A;  3IH8 A;  1TH8 B;  1H4Y A;  5EUW A; 
#chains in the Genus database with same CATH topology
 3QDQ A;  4XS5 A;  4QTP A;  3V97 A;  3MOG A;  4L8K A;  3AGE A;  3MGL A;  1HF2 A;  3LKL A;  3F43 A;  3T6O A;  3DOR A;  1WXX A;  1BPL A;  3IHB A;  3GK7 A;  1H4Z A;  3K50 A;  1AUZ A;  1N6E A;  5EUW A;  3GVL A;  2KA5 A;  2AS0 A;  3GHF A;  3OIR A;  3D03 A;  1WXW A;  2VY9 A;  4AE2 A;  3GMF A;  1SBO A;  3V8V A;  2B78 A;  3ZTB A;  2CWW A;  5EUU A;  3NY7 A;  1TID B;  1V0E A;  3ZXN A;  4DGF A;  3GVJ A;  4DMG A;  5EUS A;  4JC0 A;  3LDF A;  2ZOA A;  1VC1 A;  1TH8 B;  1H4Y A;  4L1C A;  3JU4 A;  5EUZ A;  4HYL A;  2RRL A;  1BUZ A;  3C0K A;  3DJA A;  1T6R A;  1N6F A;  4DGH A;  4GHN A;  4HIZ A;  2ZO9 B;  3GVK A;  2DXL A;  1K32 A;  3DUP A;  1V0F A;  1H4X A;  1J7X A;  5EUX A;  1FC7 A;  1THN B;  3IH8 A;  1FCF A;  1FC6 A;  5EZB A;  3AGD A;  4AEJ A;  2DXN A;  3EH7 A;  3D3U A;  1TIL B;  3IH9 A;  3IHA A;  3OIZ A;  1N6D A;  3LLO A;  2KLN A;  3IF5 A;  1FC9 A;  3VSE A;  2OAS A; 
#chains in the Genus database with same CATH homology
 5EUZ A;  4HYL A;  4XS5 A;  2KA5 A;  4QTP A;  3OIR A;  5EZB A;  3AGD A;  1BUZ A;  2VY9 A;  1T6R A;  4DGH A;  1SBO A;  3AGE A;  3MGL A;  1TIL B;  3LKL A;  3F43 A;  3T6O A;  3ZTB A;  3IH9 A;  3IHA A;  3OIZ A;  3LLO A;  5EUU A;  3IHB A;  3NY7 A;  1TID B;  1H4Z A;  3ZXN A;  4DGF A;  1H4X A;  2KLN A;  5EUS A;  5EUX A;  1AUZ A;  1THN B;  3IF5 A;  1VC1 A;  3IH8 A;  1TH8 B;  1H4Y A;  5EUW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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