3T6OA

The structure of an anti-sigma-factor antagonist (stas) domain protein from planctomyces limnophilus.
Total Genus 29
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
29
sequence length
118
structure length
118
Chain Sequence
AMADIRVTHEAQVTVISFPAVFQRLRETEVEQIASTFLAAMQGAQPRKVLIDLEGVEFFGSSFIELLVRGWKRIKEDQQGVFALCSVSPYCVEVLQVTHIDEVWPRYSTKQEALLAMA
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Transport protein
molecule keywords Sulfate transporter/antisigma-factor antagonist STAS
publication title The Structure of an Anti-sigma-factor antagonist (STAS) domain protein from Planctomyces limnophilus.
rcsb
source organism Planctomyces limnophilus
total genus 29
structure length 118
sequence length 118
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2011-07-28
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.750.24 Alpha Beta 2-Layer Sandwich Transcription Regulator spoIIAA STAS domain 3t6oA00
3OIZA 1H4XA 1VC1A 5EUXA 4XS5A 5EUZA 2KA5A 2VY9A 5EUWA 3ZTBA 4QTPA 3IHAA 1TH8B 1THNB 1AUZA 3LKLA 3LLOA 4DGFA 3IHBA 1TILB 2KLNA 1SBOA 5EZBA 4DGHA 3IF5A 3AGDA 3AGEA 5EUUA 1TIDB 1T6RA 3IH9A 3OIRA 3IH8A 4HYLA 1H4YA 1BUZA 3ZXNA 5EUSA 3MGLA 3T6OA 3F43A 1H4ZA 3NY7A
chains in the Genus database with same CATH superfamily
3K50A 2B78A 5EUXA 4XS5A 3DORA 2KA5A 2ZO9B 1N6DA 3LLOA 3V97A 1V0FA 5EZBA 1SBOA 4DGHA 4DGFA 3C0KA 4GHNA 4L1CA 4HYLA 1BUZA 4JC0A 3GK7A 1HF2A 1K32A 3GMFA 3OIZA 3MOGA 3VSEA 1H4XA 1VC1A 2ZOAA 2VY9A 1FCFA 1TH8B 2RRLA 3IF5A 3AGDA 3D03A 4AE2A 1V0EA 3GVLA 3IH8A 1H4YA 3GHFA 3MGLA 3T6OA 3F43A 1N6FA 1WXWA 2CWWA 3ZTBA 4QTPA 2DXLA 3IHAA 4L8KA 1AUZA 3LKLA 1FC7A 3GVKA 5EUUA 3OIRA 1BPLA 3ZXNA 5EUSA 4DMGA 3DJAA 3GVJA 2OASA 5EUZA 1J7XA 5EUWA 1THNB 3LDFA 3V8VA 1FC6A 1WXXA 3JU4A 3IHBA 1TILB 2KLNA 4AEJA 3D3UA 3AGEA 1TIDB 1T6RA 3IH9A 4HIZA 1N6EA 2AS0A 2DXNA 1H4ZA 3DUPA 3NY7A 1FC9A 3EH7A 3QDQA
chains in the Genus database with same CATH topology
3OIZA 1H4XA 1VC1A 5EUXA 4XS5A 5EUZA 2KA5A 2VY9A 5EUWA 3ZTBA 4QTPA 3IHAA 1TH8B 1THNB 1AUZA 3LKLA 3LLOA 4DGFA 3IHBA 1TILB 2KLNA 1SBOA 5EZBA 4DGHA 3IF5A 3AGDA 3AGEA 5EUUA 1TIDB 1T6RA 3IH9A 3OIRA 3IH8A 4HYLA 1H4YA 1BUZA 3ZXNA 5EUSA 3MGLA 3T6OA 3F43A 1H4ZA 3NY7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3OIZ A;  1H4X A;  1VC1 A;  5EUX A;  4XS5 A;  5EUZ A;  2KA5 A;  2VY9 A;  5EUW A;  3ZTB A;  4QTP A;  3IHA A;  1TH8 B;  1THN B;  1AUZ A;  3LKL A;  3LLO A;  4DGF A;  3IHB A;  1TIL B;  2KLN A;  1SBO A;  5EZB A;  4DGH A;  3IF5 A;  3AGD A;  3AGE A;  5EUU A;  1TID B;  1T6R A;  3IH9 A;  3OIR A;  3IH8 A;  4HYL A;  1H4Y A;  1BUZ A;  3ZXN A;  5EUS A;  3MGL A;  3T6O A;  3F43 A;  1H4Z A;  3NY7 A; 
#chains in the Genus database with same CATH topology
 3K50 A;  2B78 A;  5EUX A;  4XS5 A;  3DOR A;  2KA5 A;  2ZO9 B;  1N6D A;  3LLO A;  3V97 A;  1V0F A;  5EZB A;  1SBO A;  4DGH A;  4DGF A;  3C0K A;  4GHN A;  4L1C A;  4HYL A;  1BUZ A;  4JC0 A;  3GK7 A;  1HF2 A;  1K32 A;  3GMF A;  3OIZ A;  3MOG A;  3VSE A;  1H4X A;  1VC1 A;  2ZOA A;  2VY9 A;  1FCF A;  1TH8 B;  2RRL A;  3IF5 A;  3AGD A;  3D03 A;  4AE2 A;  1V0E A;  3GVL A;  3IH8 A;  1H4Y A;  3GHF A;  3MGL A;  3T6O A;  3F43 A;  1N6F A;  1WXW A;  2CWW A;  3ZTB A;  4QTP A;  2DXL A;  3IHA A;  4L8K A;  1AUZ A;  3LKL A;  1FC7 A;  3GVK A;  5EUU A;  3OIR A;  1BPL A;  3ZXN A;  5EUS A;  4DMG A;  3DJA A;  3GVJ A;  2OAS A;  5EUZ A;  1J7X A;  5EUW A;  1THN B;  3LDF A;  3V8V A;  1FC6 A;  1WXX A;  3JU4 A;  3IHB A;  1TIL B;  2KLN A;  4AEJ A;  3D3U A;  3AGE A;  1TID B;  1T6R A;  3IH9 A;  4HIZ A;  1N6E A;  2AS0 A;  2DXN A;  1H4Z A;  3DUP A;  3NY7 A;  1FC9 A;  3EH7 A;  3QDQ A; 
#chains in the Genus database with same CATH homology
 3OIZ A;  1H4X A;  1VC1 A;  5EUX A;  4XS5 A;  5EUZ A;  2KA5 A;  2VY9 A;  5EUW A;  3ZTB A;  4QTP A;  3IHA A;  1TH8 B;  1THN B;  1AUZ A;  3LKL A;  3LLO A;  4DGF A;  3IHB A;  1TIL B;  2KLN A;  1SBO A;  5EZB A;  4DGH A;  3IF5 A;  3AGD A;  3AGE A;  5EUU A;  1TID B;  1T6R A;  3IH9 A;  3OIR A;  3IH8 A;  4HYL A;  1H4Y A;  1BUZ A;  3ZXN A;  5EUS A;  3MGL A;  3T6O A;  3F43 A;  1H4Z A;  3NY7 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...