1H4ZA

Structure of the anti-sigma factor antagonist spoiiaa in its unphosphorylated form
Total Genus 39
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
39
sequence length
113
structure length
110
Chain Sequence
AFQLEMVTRETVVIRLFGELDHHAVEQIRAKISTAIFQGAVTTIIWNFERLSFMDSSGVGLVLGRMRELEAVAGRTILLNPSPTMRKVFQFGPWMMDATEEEAIDRVRGI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Cell differentiation
molecule keywords ANTI-SIGMA F FACTOR ANTAGONIST
publication title Structure of the Bacillus Cell Fate Determinant Spoiiaa in Phosphorylated and Unphosphorylated Forms
pubmed doi rcsb
source organism Bacillus sphaericus
total genus 39
structure length 110
sequence length 113
ec nomenclature
pdb deposition date 2001-05-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01740 STAS STAS domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.750.24 Alpha Beta 2-Layer Sandwich Transcription Regulator spoIIAA STAS domain 1h4zA00
1H4YA 1SBOA 3IHBA 1TILB 3ZXNA 3MGLA 3NY7A 1VC1A 1H4XA 5EUWA 2VY9A 2KA5A 5EUSA 3F43A 5EUUA 5EUZA 4DGHA 3LKLA 5EUXA 4QTPA 3IH9A 5EZBA 4XS5A 1TH8B 3OIZA 3LLOA 1H4ZA 4HYLA 2KLNA 3OIRA 4DGFA 3AGDA 1T6RA 1THNB 3IHAA 3AGEA 1BUZA 3T6OA 3IH8A 1AUZA 1TIDB 3ZTBA 3IF5A
chains in the Genus database with same CATH superfamily
4GHNA 3D03A 1HF2A 1FC9A 3ZXNA 3VSEA 1N6DA 3GVKA 1FC6A 1WXXA 3V97A 4QTPA 3GVJA 3GVLA 1TH8B 3OIZA 1H4ZA 2ZO9B 1V0EA 1T6RA 4DMGA 1J7XA 4JC0A 3IH8A 4L1CA 3ZTBA 3IF5A 1SBOA 3MOGA 3IHBA 1TILB 5EUWA 3F43A 5EUZA 5EZBA 3DORA 4HIZA 2ZOAA 3GHFA 2B78A 3LLOA 4HYLA 1K32A 2KLNA 3OIRA 4DGFA 3IHAA 3AGEA 4L8KA 3T6OA 1AUZA 1TIDB 3GMFA 3C0KA 1N6FA 3NY7A 1VC1A 3D3UA 2KA5A 3QDQA 4DGHA 2AS0A 3LKLA 2RRLA 3DUPA 3EH7A 3AGDA 1THNB 4AE2A 2OASA 1BUZA 2DXNA 3K50A 1H4YA 1FCFA 3MGLA 1H4XA 2VY9A 5EUSA 5EUUA 3GK7A 5EUXA 3IH9A 2DXLA 1WXWA 1FC7A 4XS5A 4AEJA 1N6EA 1V0FA 3JU4A 3V8VA 2CWWA 1BPLA 3DJAA 3LDFA
chains in the Genus database with same CATH topology
1H4YA 1SBOA 3IHBA 1TILB 3ZXNA 3MGLA 3NY7A 1VC1A 1H4XA 5EUWA 2VY9A 2KA5A 5EUSA 3F43A 5EUUA 5EUZA 4DGHA 3LKLA 5EUXA 4QTPA 3IH9A 5EZBA 4XS5A 1TH8B 3OIZA 3LLOA 1H4ZA 4HYLA 2KLNA 3OIRA 4DGFA 3AGDA 1T6RA 1THNB 3IHAA 3AGEA 1BUZA 3T6OA 3IH8A 1AUZA 1TIDB 3ZTBA 3IF5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1H4Y A;  1SBO A;  3IHB A;  1TIL B;  3ZXN A;  3MGL A;  3NY7 A;  1VC1 A;  1H4X A;  5EUW A;  2VY9 A;  2KA5 A;  5EUS A;  3F43 A;  5EUU A;  5EUZ A;  4DGH A;  3LKL A;  5EUX A;  4QTP A;  3IH9 A;  5EZB A;  4XS5 A;  1TH8 B;  3OIZ A;  3LLO A;  1H4Z A;  4HYL A;  2KLN A;  3OIR A;  4DGF A;  3AGD A;  1T6R A;  1THN B;  3IHA A;  3AGE A;  1BUZ A;  3T6O A;  3IH8 A;  1AUZ A;  1TID B;  3ZTB A;  3IF5 A; 
#chains in the Genus database with same CATH topology
 4GHN A;  3D03 A;  1HF2 A;  1FC9 A;  3ZXN A;  3VSE A;  1N6D A;  3GVK A;  1FC6 A;  1WXX A;  3V97 A;  4QTP A;  3GVJ A;  3GVL A;  1TH8 B;  3OIZ A;  1H4Z A;  2ZO9 B;  1V0E A;  1T6R A;  4DMG A;  1J7X A;  4JC0 A;  3IH8 A;  4L1C A;  3ZTB A;  3IF5 A;  1SBO A;  3MOG A;  3IHB A;  1TIL B;  5EUW A;  3F43 A;  5EUZ A;  5EZB A;  3DOR A;  4HIZ A;  2ZOA A;  3GHF A;  2B78 A;  3LLO A;  4HYL A;  1K32 A;  2KLN A;  3OIR A;  4DGF A;  3IHA A;  3AGE A;  4L8K A;  3T6O A;  1AUZ A;  1TID B;  3GMF A;  3C0K A;  1N6F A;  3NY7 A;  1VC1 A;  3D3U A;  2KA5 A;  3QDQ A;  4DGH A;  2AS0 A;  3LKL A;  2RRL A;  3DUP A;  3EH7 A;  3AGD A;  1THN B;  4AE2 A;  2OAS A;  1BUZ A;  2DXN A;  3K50 A;  1H4Y A;  1FCF A;  3MGL A;  1H4X A;  2VY9 A;  5EUS A;  5EUU A;  3GK7 A;  5EUX A;  3IH9 A;  2DXL A;  1WXW A;  1FC7 A;  4XS5 A;  4AEJ A;  1N6E A;  1V0F A;  3JU4 A;  3V8V A;  2CWW A;  1BPL A;  3DJA A;  3LDF A; 
#chains in the Genus database with same CATH homology
 1H4Y A;  1SBO A;  3IHB A;  1TIL B;  3ZXN A;  3MGL A;  3NY7 A;  1VC1 A;  1H4X A;  5EUW A;  2VY9 A;  2KA5 A;  5EUS A;  3F43 A;  5EUU A;  5EUZ A;  4DGH A;  3LKL A;  5EUX A;  4QTP A;  3IH9 A;  5EZB A;  4XS5 A;  1TH8 B;  3OIZ A;  3LLO A;  1H4Z A;  4HYL A;  2KLN A;  3OIR A;  4DGF A;  3AGD A;  1T6R A;  1THN B;  3IHA A;  3AGE A;  1BUZ A;  3T6O A;  3IH8 A;  1AUZ A;  1TID B;  3ZTB A;  3IF5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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