1H4ZA

Structure of the anti-sigma factor antagonist spoiiaa in its unphosphorylated form
Total Genus 39
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
39
sequence length
113
structure length
110
Chain Sequence
AFQLEMVTRETVVIRLFGELDHHAVEQIRAKISTAIFQGAVTTIIWNFERLSFMDSSGVGLVLGRMRELEAVAGRTILLNPSPTMRKVFQFGPWMMDATEEEAIDRVRGI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Cell differentiation
molecule keywords ANTI-SIGMA F FACTOR ANTAGONIST
publication title Structure of the Bacillus Cell Fate Determinant Spoiiaa in Phosphorylated and Unphosphorylated Forms
pubmed doi rcsb
source organism Bacillus sphaericus
total genus 39
structure length 110
sequence length 113
ec nomenclature
pdb deposition date 2001-05-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01740 STAS STAS domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.750.24 Alpha Beta 2-Layer Sandwich Transcription Regulator spoIIAA STAS domain 1h4zA00
3MGLA 4DGHA 1VC1A 1BUZA 3IH8A 5EUXA 3IF5A 5EUSA 3AGEA 5EUUA 3ZTBA 1THNB 4DGFA 3ZXNA 4XS5A 3IHAA 2KLNA 3NY7A 3IHBA 1TH8B 3F43A 3T6OA 3OIRA 3AGDA 3IH9A 1TILB 3LLOA 1H4ZA 1SBOA 3LKLA 1AUZA 5EUWA 2VY9A 1T6RA 5EUZA 4HYLA 2KA5A 1TIDB 1H4YA 3OIZA 1H4XA 4QTPA 5EZBA
chains in the Genus database with same CATH superfamily
3DORA 2CWWA 1HF2A 4DGHA 1J7XA 1N6EA 4DGFA 4XS5A 2KLNA 2AS0A 3IHBA 3IH9A 3K50A 3LLOA 3GVJA 5EUWA 1T6RA 2VY9A 4HIZA 5EUZA 2DXLA 3EH7A 3JU4A 1H4YA 3D03A 3MGLA 3IF5A 3LDFA 5EUSA 3AGEA 1FC6A 3GVKA 1WXXA 3D3UA 3QDQA 3F43A 3AGDA 1N6FA 4GHNA 3GMFA 1V0EA 1K32A 3LKLA 1AUZA 1FC9A 2DXNA 4HYLA 3C0KA 4JC0A 1TIDB 3V8VA 4L1CA 1H4XA 1N6DA 1VC1A 1BUZA 5EUXA 2OASA 5EUUA 3GVLA 3ZTBA 3GHFA 3ZXNA 2ZO9B 1TH8B 1WXWA 1TILB 1H4ZA 2B78A 3VSEA 3GK7A 2KA5A 1FCFA 5EZBA 3IH8A 2RRLA 3DJAA 1V0FA 1THNB 4AEJA 3IHAA 3NY7A 3T6OA 2ZOAA 3OIRA 3MOGA 4AE2A 1BPLA 1FC7A 1SBOA 4L8KA 4DMGA 3OIZA 3V97A 3DUPA 4QTPA
chains in the Genus database with same CATH topology
3MGLA 4DGHA 1VC1A 1BUZA 3IH8A 5EUXA 3IF5A 5EUSA 3AGEA 5EUUA 3ZTBA 1THNB 4DGFA 3ZXNA 4XS5A 3IHAA 2KLNA 3NY7A 3IHBA 1TH8B 3F43A 3T6OA 3OIRA 3AGDA 3IH9A 1TILB 3LLOA 1H4ZA 1SBOA 3LKLA 1AUZA 5EUWA 2VY9A 1T6RA 5EUZA 4HYLA 2KA5A 1TIDB 1H4YA 3OIZA 1H4XA 4QTPA 5EZBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3MGL A;  4DGH A;  1VC1 A;  1BUZ A;  3IH8 A;  5EUX A;  3IF5 A;  5EUS A;  3AGE A;  5EUU A;  3ZTB A;  1THN B;  4DGF A;  3ZXN A;  4XS5 A;  3IHA A;  2KLN A;  3NY7 A;  3IHB A;  1TH8 B;  3F43 A;  3T6O A;  3OIR A;  3AGD A;  3IH9 A;  1TIL B;  3LLO A;  1H4Z A;  1SBO A;  3LKL A;  1AUZ A;  5EUW A;  2VY9 A;  1T6R A;  5EUZ A;  4HYL A;  2KA5 A;  1TID B;  1H4Y A;  3OIZ A;  1H4X A;  4QTP A;  5EZB A; 
#chains in the Genus database with same CATH topology
 3DOR A;  2CWW A;  1HF2 A;  4DGH A;  1J7X A;  1N6E A;  4DGF A;  4XS5 A;  2KLN A;  2AS0 A;  3IHB A;  3IH9 A;  3K50 A;  3LLO A;  3GVJ A;  5EUW A;  1T6R A;  2VY9 A;  4HIZ A;  5EUZ A;  2DXL A;  3EH7 A;  3JU4 A;  1H4Y A;  3D03 A;  3MGL A;  3IF5 A;  3LDF A;  5EUS A;  3AGE A;  1FC6 A;  3GVK A;  1WXX A;  3D3U A;  3QDQ A;  3F43 A;  3AGD A;  1N6F A;  4GHN A;  3GMF A;  1V0E A;  1K32 A;  3LKL A;  1AUZ A;  1FC9 A;  2DXN A;  4HYL A;  3C0K A;  4JC0 A;  1TID B;  3V8V A;  4L1C A;  1H4X A;  1N6D A;  1VC1 A;  1BUZ A;  5EUX A;  2OAS A;  5EUU A;  3GVL A;  3ZTB A;  3GHF A;  3ZXN A;  2ZO9 B;  1TH8 B;  1WXW A;  1TIL B;  1H4Z A;  2B78 A;  3VSE A;  3GK7 A;  2KA5 A;  1FCF A;  5EZB A;  3IH8 A;  2RRL A;  3DJA A;  1V0F A;  1THN B;  4AEJ A;  3IHA A;  3NY7 A;  3T6O A;  2ZOA A;  3OIR A;  3MOG A;  4AE2 A;  1BPL A;  1FC7 A;  1SBO A;  4L8K A;  4DMG A;  3OIZ A;  3V97 A;  3DUP A;  4QTP A; 
#chains in the Genus database with same CATH homology
 3MGL A;  4DGH A;  1VC1 A;  1BUZ A;  3IH8 A;  5EUX A;  3IF5 A;  5EUS A;  3AGE A;  5EUU A;  3ZTB A;  1THN B;  4DGF A;  3ZXN A;  4XS5 A;  3IHA A;  2KLN A;  3NY7 A;  3IHB A;  1TH8 B;  3F43 A;  3T6O A;  3OIR A;  3AGD A;  3IH9 A;  1TIL B;  3LLO A;  1H4Z A;  1SBO A;  3LKL A;  1AUZ A;  5EUW A;  2VY9 A;  1T6R A;  5EUZ A;  4HYL A;  2KA5 A;  1TID B;  1H4Y A;  3OIZ A;  1H4X A;  4QTP A;  5EZB A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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