1H4YA

Structure of the anti-sigma factor antagonist spoiiaa in its unphosphorylated form
Total Genus 43
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
43
sequence length
115
structure length
115
Chain Sequence
AFQLEMVTRETVVIRLFGELDHHAVEQIRAKISTAIFQGAVTTIIWNFERLSFMDSSGVGLVLGRMRELEAVAGRTILLNPSPTVRKVFQFSGLGPWMMDATEEEAIDRVRGIVN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords ANTI-SIGMA F FACTOR ANTAGONIST
publication title Structure of the Bacillus Cell Fate Determinant Spoiiaa in Phosphorylated and Unphosphorylated Forms
pubmed doi rcsb
source organism Bacillus sphaericus
molecule tags Cell differentiation
total genus 43
structure length 115
sequence length 115
chains with identical sequence B
ec nomenclature
pdb deposition date 2001-05-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01740 STAS STAS domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.750.24 Alpha Beta 2-Layer Sandwich Transcription Regulator spoIIAA STAS domain 1h4yA00
3AGEA 4DGHA 3AGDA 3OIZA 3OIRA 3ZXNA 5EZBA 4XS5A 3IHBA 1TH8B 4DGFA 3LKLA 1H4YA 1BUZA 3IHAA 5EUSA 2KLNA 3ZTBA 1H4ZA 1TILB 4HYLA 2KA5A 1H4XA 1T6RA 1VC1A 3IH9A 5EUZA 3F43A 1AUZA 3MGLA 1SBOA 2VY9A 1TIDB 3NY7A 4QTPA 1THNB 5EUWA 3LLOA 3IF5A 5EUUA 3IH8A 5EUXA 3T6OA
chains in the Genus database with same CATH superfamily
3AGEA 4AE2A 1FC9A 4DGFA 3DJAA 3K50A 3LKLA 4JC0A 3IHAA 2CWWA 1FCFA 1TILB 1T6RA 1VC1A 2AS0A 3F43A 4L8KA 1J7XA 3MGLA 3MOGA 1TIDB 1THNB 5EUWA 3V8VA 3IF5A 1BPLA 3GK7A 5EUXA 4AEJA 1N6FA 3GVJA 4L1CA 3OIZA 3OIRA 1TH8B 2B78A 1FC7A 1FC6A 1BUZA 5EUSA 1N6DA 2RRLA 1H4ZA 4HYLA 1V0FA 2DXNA 3LDFA 2ZOAA 3IH9A 3EH7A 1AUZA 3DUPA 1SBOA 2VY9A 5EUUA 4QTPA 3JU4A 3C0KA 4DMGA 1N6EA 3AGDA 3D3UA 3IHBA 2OASA 3QDQA 3GHFA 3GVKA 4HIZA 1K32A 3ZTBA 2KA5A 1H4XA 3D03A 1HF2A 3DORA 3NY7A 3VSEA 3IH8A 3T6OA 4DGHA 5EZBA 4XS5A 4GHNA 2ZO9B 1H4YA 3V97A 2KLNA 1V0EA 1WXWA 1WXXA 5EUZA 2DXLA 3GVLA 3LLOA 3GMFA 3ZXNA
chains in the Genus database with same CATH topology
3AGEA 4DGHA 3AGDA 3OIZA 3OIRA 3ZXNA 5EZBA 4XS5A 3IHBA 1TH8B 4DGFA 3LKLA 1H4YA 1BUZA 3IHAA 5EUSA 2KLNA 3ZTBA 1H4ZA 1TILB 4HYLA 2KA5A 1H4XA 1T6RA 1VC1A 3IH9A 5EUZA 3F43A 1AUZA 3MGLA 1SBOA 2VY9A 1TIDB 3NY7A 4QTPA 1THNB 5EUWA 3LLOA 3IF5A 5EUUA 3IH8A 5EUXA 3T6OA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3AGE A;  4DGH A;  3AGD A;  3OIZ A;  3OIR A;  3ZXN A;  5EZB A;  4XS5 A;  3IHB A;  1TH8 B;  4DGF A;  3LKL A;  1H4Y A;  1BUZ A;  3IHA A;  5EUS A;  2KLN A;  3ZTB A;  1H4Z A;  1TIL B;  4HYL A;  2KA5 A;  1H4X A;  1T6R A;  1VC1 A;  3IH9 A;  5EUZ A;  3F43 A;  1AUZ A;  3MGL A;  1SBO A;  2VY9 A;  1TID B;  3NY7 A;  4QTP A;  1THN B;  5EUW A;  3LLO A;  3IF5 A;  5EUU A;  3IH8 A;  5EUX A;  3T6O A; 
#chains in the Genus database with same CATH topology
 3AGE A;  4AE2 A;  1FC9 A;  4DGF A;  3DJA A;  3K50 A;  3LKL A;  4JC0 A;  3IHA A;  2CWW A;  1FCF A;  1TIL B;  1T6R A;  1VC1 A;  2AS0 A;  3F43 A;  4L8K A;  1J7X A;  3MGL A;  3MOG A;  1TID B;  1THN B;  5EUW A;  3V8V A;  3IF5 A;  1BPL A;  3GK7 A;  5EUX A;  4AEJ A;  1N6F A;  3GVJ A;  4L1C A;  3OIZ A;  3OIR A;  1TH8 B;  2B78 A;  1FC7 A;  1FC6 A;  1BUZ A;  5EUS A;  1N6D A;  2RRL A;  1H4Z A;  4HYL A;  1V0F A;  2DXN A;  3LDF A;  2ZOA A;  3IH9 A;  3EH7 A;  1AUZ A;  3DUP A;  1SBO A;  2VY9 A;  5EUU A;  4QTP A;  3JU4 A;  3C0K A;  4DMG A;  1N6E A;  3AGD A;  3D3U A;  3IHB A;  2OAS A;  3QDQ A;  3GHF A;  3GVK A;  4HIZ A;  1K32 A;  3ZTB A;  2KA5 A;  1H4X A;  3D03 A;  1HF2 A;  3DOR A;  3NY7 A;  3VSE A;  3IH8 A;  3T6O A;  4DGH A;  5EZB A;  4XS5 A;  4GHN A;  2ZO9 B;  1H4Y A;  3V97 A;  2KLN A;  1V0E A;  1WXW A;  1WXX A;  5EUZ A;  2DXL A;  3GVL A;  3LLO A;  3GMF A;  3ZXN A; 
#chains in the Genus database with same CATH homology
 3AGE A;  4DGH A;  3AGD A;  3OIZ A;  3OIR A;  3ZXN A;  5EZB A;  4XS5 A;  3IHB A;  1TH8 B;  4DGF A;  3LKL A;  1H4Y A;  1BUZ A;  3IHA A;  5EUS A;  2KLN A;  3ZTB A;  1H4Z A;  1TIL B;  4HYL A;  2KA5 A;  1H4X A;  1T6R A;  1VC1 A;  3IH9 A;  5EUZ A;  3F43 A;  1AUZ A;  3MGL A;  1SBO A;  2VY9 A;  1TID B;  3NY7 A;  4QTP A;  1THN B;  5EUW A;  3LLO A;  3IF5 A;  5EUU A;  3IH8 A;  5EUX A;  3T6O A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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