1H4YA

Structure of the anti-sigma factor antagonist spoiiaa in its unphosphorylated form
Total Genus 43
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
43
sequence length
115
structure length
115
Chain Sequence
AFQLEMVTRETVVIRLFGELDHHAVEQIRAKISTAIFQGAVTTIIWNFERLSFMDSSGVGLVLGRMRELEAVAGRTILLNPSPTVRKVFQFSGLGPWMMDATEEEAIDRVRGIVN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Cell differentiation
molecule keywords ANTI-SIGMA F FACTOR ANTAGONIST
publication title Structure of the Bacillus Cell Fate Determinant Spoiiaa in Phosphorylated and Unphosphorylated Forms
pubmed doi rcsb
source organism Bacillus sphaericus
total genus 43
structure length 115
sequence length 115
chains with identical sequence B
ec nomenclature
pdb deposition date 2001-05-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01740 STAS STAS domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.750.24 Alpha Beta 2-Layer Sandwich Transcription Regulator spoIIAA STAS domain 1h4yA00
2VY9A 3OIZA 3F43A 3NY7A 1H4YA 3MGLA 3AGEA 1TH8B 3T6OA 4HYLA 3IHAA 3IH9A 2KLNA 4QTPA 3IF5A 3ZTBA 5EZBA 5EUXA 1THNB 1H4XA 1T6RA 3LKLA 1H4ZA 5EUZA 1SBOA 3IH8A 4DGHA 5EUSA 3AGDA 2KA5A 1TILB 3LLOA 5EUUA 1AUZA 4XS5A 3IHBA 3ZXNA 5EUWA 3OIRA 4DGFA 1BUZA 1TIDB 1VC1A
chains in the Genus database with same CATH superfamily
3EH7A 3DJAA 1K32A 1FCFA 3OIZA 3NY7A 1H4YA 3QDQA 3T6OA 3VSEA 1BPLA 3V8VA 3ZTBA 3GMFA 4HIZA 1FC6A 3GVKA 3AGDA 3JU4A 1FC7A 1AUZA 3IHBA 3GK7A 5EUWA 2B78A 1BUZA 3D3UA 2DXNA 2DXLA 3F43A 1TH8B 3IH9A 2KLNA 4QTPA 3GVLA 1H4ZA 5EUZA 2AS0A 3IH8A 3D03A 4JC0A 1TILB 1WXWA 4L8KA 3OIRA 1TIDB 1HF2A 1N6EA 3MGLA 2ZOAA 3V97A 3DORA 3IF5A 3K50A 1T6RA 1V0FA 3GVJA 1SBOA 5EUSA 3GHFA 4GHNA 1FC9A 5EUUA 4XS5A 2OASA 4DGFA 2CWWA 4AE2A 2VY9A 4DMGA 2ZO9B 1WXXA 3DUPA 1J7XA 3AGEA 4HYLA 3IHAA 3C0KA 4L1CA 2RRLA 5EZBA 3LDFA 5EUXA 1THNB 1H4XA 3LKLA 4DGHA 2KA5A 3LLOA 1N6FA 3ZXNA 4AEJA 3MOGA 1V0EA 1VC1A 1N6DA
chains in the Genus database with same CATH topology
2VY9A 3OIZA 3F43A 3NY7A 1H4YA 3MGLA 3AGEA 1TH8B 3T6OA 4HYLA 3IHAA 3IH9A 2KLNA 4QTPA 3IF5A 3ZTBA 5EZBA 5EUXA 1THNB 1H4XA 1T6RA 3LKLA 1H4ZA 5EUZA 1SBOA 3IH8A 4DGHA 5EUSA 3AGDA 2KA5A 1TILB 3LLOA 5EUUA 1AUZA 4XS5A 3IHBA 3ZXNA 5EUWA 3OIRA 4DGFA 1BUZA 1TIDB 1VC1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2VY9 A;  3OIZ A;  3F43 A;  3NY7 A;  1H4Y A;  3MGL A;  3AGE A;  1TH8 B;  3T6O A;  4HYL A;  3IHA A;  3IH9 A;  2KLN A;  4QTP A;  3IF5 A;  3ZTB A;  5EZB A;  5EUX A;  1THN B;  1H4X A;  1T6R A;  3LKL A;  1H4Z A;  5EUZ A;  1SBO A;  3IH8 A;  4DGH A;  5EUS A;  3AGD A;  2KA5 A;  1TIL B;  3LLO A;  5EUU A;  1AUZ A;  4XS5 A;  3IHB A;  3ZXN A;  5EUW A;  3OIR A;  4DGF A;  1BUZ A;  1TID B;  1VC1 A; 
#chains in the Genus database with same CATH topology
 3EH7 A;  3DJA A;  1K32 A;  1FCF A;  3OIZ A;  3NY7 A;  1H4Y A;  3QDQ A;  3T6O A;  3VSE A;  1BPL A;  3V8V A;  3ZTB A;  3GMF A;  4HIZ A;  1FC6 A;  3GVK A;  3AGD A;  3JU4 A;  1FC7 A;  1AUZ A;  3IHB A;  3GK7 A;  5EUW A;  2B78 A;  1BUZ A;  3D3U A;  2DXN A;  2DXL A;  3F43 A;  1TH8 B;  3IH9 A;  2KLN A;  4QTP A;  3GVL A;  1H4Z A;  5EUZ A;  2AS0 A;  3IH8 A;  3D03 A;  4JC0 A;  1TIL B;  1WXW A;  4L8K A;  3OIR A;  1TID B;  1HF2 A;  1N6E A;  3MGL A;  2ZOA A;  3V97 A;  3DOR A;  3IF5 A;  3K50 A;  1T6R A;  1V0F A;  3GVJ A;  1SBO A;  5EUS A;  3GHF A;  4GHN A;  1FC9 A;  5EUU A;  4XS5 A;  2OAS A;  4DGF A;  2CWW A;  4AE2 A;  2VY9 A;  4DMG A;  2ZO9 B;  1WXX A;  3DUP A;  1J7X A;  3AGE A;  4HYL A;  3IHA A;  3C0K A;  4L1C A;  2RRL A;  5EZB A;  3LDF A;  5EUX A;  1THN B;  1H4X A;  3LKL A;  4DGH A;  2KA5 A;  3LLO A;  1N6F A;  3ZXN A;  4AEJ A;  3MOG A;  1V0E A;  1VC1 A;  1N6D A; 
#chains in the Genus database with same CATH homology
 2VY9 A;  3OIZ A;  3F43 A;  3NY7 A;  1H4Y A;  3MGL A;  3AGE A;  1TH8 B;  3T6O A;  4HYL A;  3IHA A;  3IH9 A;  2KLN A;  4QTP A;  3IF5 A;  3ZTB A;  5EZB A;  5EUX A;  1THN B;  1H4X A;  1T6R A;  3LKL A;  1H4Z A;  5EUZ A;  1SBO A;  3IH8 A;  4DGH A;  5EUS A;  3AGD A;  2KA5 A;  1TIL B;  3LLO A;  5EUU A;  1AUZ A;  4XS5 A;  3IHB A;  3ZXN A;  5EUW A;  3OIR A;  4DGF A;  1BUZ A;  1TID B;  1VC1 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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