2ZOAA

Malonate-bound structure of the glycerophosphodiesterase from enterobacter aerogenes (gpdq) collected at 1.280 angstrom
Total Genus 77
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
77
sequence length
271
structure length
271
Chain Sequence
MLLAHISDTHFRSRGEKLYGFIDVNAANADVVSQLNALRERPDAVVVSGDIVNCGRPEEYQVARQILGSLNYPLYLIPGNHDDKALFLEYLQPLCPQLGSDANNMRCAVDDFATRLLFIDSSRAGTSKGWLTDETISWLEAQLFEGGDKPATIFMHHPPLPLGNAQMDPIACENGHRLLALVERFPSLTRIFCGHNHSLTMTQYRQALISTLPGTVHQVPYCHADTDPYYDLSPASCLMHRQVGEQWVSYQHSLAHYAGPWLYDENISCPT
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Phosphohydrolase
publication title Malonate-bound structure of the glycerophosphodiesterase from Enterobacter aerogenes (GpdQ) and characterization of the native Fe2+ metal-ion preference.
pubmed doi rcsb
source organism Enterobacter aerogenes
molecule tags Hydrolase
total genus 77
structure length 271
sequence length 271
chains with identical sequence B
ec nomenclature ec 3.1.4.46: Glycerophosphodiester phosphodiesterase.
pdb deposition date 2008-05-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00149 Metallophos Calcineurin-like phosphoesterase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.750.180 Alpha Beta 2-Layer Sandwich Transcription Regulator spoIIAA Transcription Regulator spoIIAA 2zoaA02
3.60.21.40 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 2zoaA01
2DXLA 2DXNA 2ZO9B 2ZOAA 3D03A
chains in the Genus database with same CATH superfamily
3H64A 5JJTA 4HIZA 1U32A 3F43A 3ZU0A 3DSCA 4V0WA 1TIDB 3C9FA 4FBWA 4KKZA 3IF5A 1HF2A 2B78A 1SU1A 1THNB 2RRLA 5EUZA 2QFRA 4KBPA 4H2IA 2NYLC 3QDQA 4LTYA 4UWQA 2Q8UA 3N5UA 4Q7FA 1KBPA 1S3LA 4XS5A 4FBKA 1G5BA 4HYLA 3DJAA 4JC0A 2NYMC 3RL5A 5F3WA 1JK7A 2Z06A 3QFMA 2CWWA 2ZO9B 4GHNA 4O4KA 2QJCA 1UTEA 1QHWA 4AEJA 2QFPA 1N6FA 3LL8A 3P71C 1OI8A 4I5NC 3DW8C 4J6OA 3GVJA 1S95A 2R17A 1TH8B 1FC9A 5JPEA 1H4YA 3H69A 3ZTBA 3THOB 1VC1A 4V0XA 3QFKA 4V0VA 2Z1AA 3IB7A 3KBPA 2DXLA 2IAEC 2Z72A 2WDEA 2XMOA 4YKEA 2OASA 3H60A 3IHBA 3QFNA 3GVKA 3GHFA 1K32A 3GMFA 1Z2XA 3H61A 4NZVA 4WWLA 1W24A 4LU9A 3T6OA 4M0VA 4MOYA 1T70A 1T71A 1NNWA 1USHA 2BDXA 3LDFA 3K50A 4DHLA 3GVLA 2AS0A 4DGFA 2NXFA 2WDDA 3AV0A 3EGGA 3FGAC 3IH8A 2GJUA 3H63A 3PSNA 3OIRA 4O5GA 1FC7A 4I5LC 3H67A 2HYPA 2IE4C 4F0ZA 4UT3A 4DGHA 1XZWA 3IVEA 5EUSA 4ORBA 3K7WC 3RL4A 3THNA 4DMGA 3E7BA 3V8VA 1FJMA 4JA9A 5INBA 3NY7A 1WAO1 4TUIA 4MOVA 1BPLA 4O43A 4AE2A 2IE3C 3ZTVA 5IOHA 4B2OA 4MP0A 1H4ZA 3QG5C 4H2FA 4ZX2A 3IVDA 3JYFA 3LKLA 2HY1A 1V73A 2WDCA 1SBOA 3EH7A 2P6BA 3CK2A 3H66A 1Z2WA 3LLOA 2JOGA 1WXXA 1S3NA 3MOGA 1WXWA 3D03A 1BUZA 2DFJA 3ICFA 4O24A 5GTUA 1H4XA 1N6DA 2USHA 3DUPA 1S70A 4IYPC 3AGEA 5EUWA 2NPPC 5EUXA 1HPUA 2CV9A 3E0JA 3GVEA 2KA5A 3PSOA 4H2GA 1V0FA 4IL1A 4JA7A 4ORCA 2WDFA 1S8EA 2O8GA 3JU4A 5EUUA 3TGHA 1T6RA 4G9JA 4H1YP 2KKNA 1QFCA 3C5WC 4LACC 5B8IA 2VY9A 4DT2A 3OIZA 3VSEA 4FBQA 3HVQA 1OIDA 3H68A 5JPFA 2ZBMA 1II7A 4ZVZA 3ZXNA 2YEQA 3AUZA 4H2BA 1IT6A 5DNYA 2ZOAA 4ORAA 3DORA 1M63A 3FLOA 4L8KA 1FC6A 4XPNA 2BCDA 2YVTA 4OR9A 2BQ8X 2A22A 2DXNA 1WARA 3V97A 1AUZA 2O8AA 4UT2A 3T1IA 1TCOA 3EGHA 5EZBA 3K7VC 3H62B 3IHAA 3E7AA 5C1VA 1FCFA 4DSYA 3RL3A 5HPEA 3IH9A 1UF3A 3IB8A 3V4YA 4H1SA 4L1CA 3AGDA 1S3MA 4UT3B 1TILB 2HYOA 4TUGA 3GK7A 1MF8A 2AHDA 1N6EA 1HP1A 1J7XA 1XM7A 3QFOA 1HO5A 1AUIA 4FCXA 3D3UA 3DSDA 1V0EA 5EQVA 3MGLA 2KLNA 4QTPA 3C0KA 3RQZA 1OIEA 4HD0A 5J28A
chains in the Genus database with same CATH topology
3H64A 5JJTA 1U32A 3ZU0A 3DSCA 4V0WA 3C9FA 4FBWA 4KKZA 1SU1A 2RRLA 2QFRA 4KBPA 4H2IA 2NYLC 4LTYA 4UWQA 2Q8UA 3N5UA 4Q7FA 1KBPA 1S3LA 4FBKA 1G5BA 2NYMC 3DJAA 4JC0A 5F3WA 3RL5A 1JK7A 2Z06A 3QFMA 4GHNA 2ZO9B 4O4KA 2QJCA 1UTEA 1QHWA 4AEJA 2QFPA 1N6FA 3LL8A 3P71C 1OI8A 4I5NC 3DW8C 4J6OA 1S95A 2R17A 5JPEA 1FC9A 3H69A 3THOB 4V0XA 3QFKA 4V0VA 2Z1AA 3IB7A 3KBPA 2DXLA 2IAEC 2Z72A 2WDEA 2XMOA 4YKEA 3H60A 3QFNA 3GHFA 1K32A 3GMFA 1Z2XA 3H61A 4NZVA 4WWLA 1W24A 4LU9A 4M0VA 4MOYA 1T70A 1T71A 1NNWA 1USHA 2BDXA 4DHLA 3K50A 3ZTVA 2NXFA 2WDDA 3AV0A 3EGGA 3FGAC 3H63A 2GJUA 3PSNA 4O5GA 1FC7A 4I5LC 3H67A 2HYPA 2IE4C 4F0ZA 4UT3A 3IVEA 1XZWA 4ORBA 3K7WC 3RL4A 3THNA 3E7BA 1FJMA 4JA9A 5INBA 1WAO1 4TUIA 4MOVA 1BPLA 4O43A 4AE2A 2IE3C 5IOHA 4B2OA 4MP0A 4H2FA 3QG5C 4ZX2A 3IVDA 3JYFA 2HY1A 1V73A 2WDCA 2P6BA 3CK2A 3H66A 1Z2WA 2JOGA 1S3NA 3MOGA 3D03A 4O24A 2DFJA 3ICFA 5GTUA 1N6DA 4IYPC 2USHA 3DUPA 1S70A 2NPPC 3GVEA 1HPUA 2CV9A 3E0JA 3PSOA 4H2GA 4IL1A 4ORCA 4JA7A 2WDFA 1S8EA 2O8GA 3TGHA 4G9JA 4H1YP 2KKNA 1QFCA 3C5WC 4LACC 5B8IA 4DT2A 4FBQA 3HVQA 1OIDA 3H68A 5JPFA 2ZBMA 1II7A 4ZVZA 2YEQA 4H2BA 3AUZA 5DNYA 1IT6A 2ZOAA 4ORAA 3DORA 1M63A 3FLOA 4L8KA 1FC6A 4XPNA 2BCDA 2YVTA 4OR9A 2BQ8X 2A22A 2DXNA 1WARA 2O8AA 4UT2A 3T1IA 1TCOA 3EGHA 3K7VC 3H62B 5C1VA 3E7AA 1FCFA 4DSYA 3RL3A 5HPEA 1UF3A 3IB8A 3V4YA 4H1SA 4L1CA 1S3MA 4UT3B 2HYOA 4TUGA 1MF8A 2AHDA 1N6EA 1HP1A 1J7XA 1XM7A 3QFOA 1HO5A 1AUIA 4FCXA 3DSDA 5EQVA 3RQZA 1OIEA 4HD0A 5J28A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2DXL A;  2DXN A;  2ZO9 B;  2ZOA A;  3D03 A; 
#chains in the Genus database with same CATH topology
 3H64 A;  5JJT A;  4HIZ A;  1U32 A;  3F43 A;  3ZU0 A;  3DSC A;  4V0W A;  1TID B;  3C9F A;  4FBW A;  4KKZ A;  3IF5 A;  1HF2 A;  2B78 A;  1SU1 A;  1THN B;  2RRL A;  5EUZ A;  2QFR A;  4KBP A;  4H2I A;  2NYL C;  3QDQ A;  4LTY A;  4UWQ A;  2Q8U A;  3N5U A;  4Q7F A;  1KBP A;  1S3L A;  4XS5 A;  4FBK A;  1G5B A;  4HYL A;  3DJA A;  4JC0 A;  2NYM C;  3RL5 A;  5F3W A;  1JK7 A;  2Z06 A;  3QFM A;  2CWW A;  2ZO9 B;  4GHN A;  4O4K A;  2QJC A;  1UTE A;  1QHW A;  4AEJ A;  2QFP A;  1N6F A;  3LL8 A;  3P71 C;  1OI8 A;  4I5N C;  3DW8 C;  4J6O A;  3GVJ A;  1S95 A;  2R17 A;  1TH8 B;  1FC9 A;  5JPE A;  1H4Y A;  3H69 A;  3ZTB A;  3THO B;  1VC1 A;  4V0X A;  3QFK A;  4V0V A;  2Z1A A;  3IB7 A;  3KBP A;  2DXL A;  2IAE C;  2Z72 A;  2WDE A;  2XMO A;  4YKE A;  2OAS A;  3H60 A;  3IHB A;  3QFN A;  3GVK A;  3GHF A;  1K32 A;  3GMF A;  1Z2X A;  3H61 A;  4NZV A;  4WWL A;  1W24 A;  4LU9 A;  3T6O A;  4M0V A;  4MOY A;  1T70 A;  1T71 A;  1NNW A;  1USH A;  2BDX A;  3LDF A;  3K50 A;  4DHL A;  3GVL A;  2AS0 A;  4DGF A;  2NXF A;  2WDD A;  3AV0 A;  3EGG A;  3FGA C;  3IH8 A;  2GJU A;  3H63 A;  3PSN A;  3OIR A;  4O5G A;  1FC7 A;  4I5L C;  3H67 A;  2HYP A;  2IE4 C;  4F0Z A;  4UT3 A;  4DGH A;  1XZW A;  3IVE A;  5EUS A;  4ORB A;  3K7W C;  3RL4 A;  3THN A;  4DMG A;  3E7B A;  3V8V A;  1FJM A;  4JA9 A;  5INB A;  3NY7 A;  1WAO 1;  4TUI A;  4MOV A;  1BPL A;  4O43 A;  4AE2 A;  2IE3 C;  3ZTV A;  5IOH A;  4B2O A;  4MP0 A;  1H4Z A;  3QG5 C;  4H2F A;  4ZX2 A;  3IVD A;  3JYF A;  3LKL A;  2HY1 A;  1V73 A;  2WDC A;  1SBO A;  3EH7 A;  2P6B A;  3CK2 A;  3H66 A;  1Z2W A;  3LLO A;  2JOG A;  1WXX A;  1S3N A;  3MOG A;  1WXW A;  3D03 A;  1BUZ A;  2DFJ A;  3ICF A;  4O24 A;  5GTU A;  1H4X A;  1N6D A;  2USH A;  3DUP A;  1S70 A;  4IYP C;  3AGE A;  5EUW A;  2NPP C;  5EUX A;  1HPU A;  2CV9 A;  3E0J A;  3GVE A;  2KA5 A;  3PSO A;  4H2G A;  1V0F A;  4IL1 A;  4JA7 A;  4ORC A;  2WDF A;  1S8E A;  2O8G A;  3JU4 A;  5EUU A;  3TGH A;  1T6R A;  4G9J A;  4H1Y P;  2KKN A;  1QFC A;  3C5W C;  4LAC C;  5B8I A;  2VY9 A;  4DT2 A;  3OIZ A;  3VSE A;  4FBQ A;  3HVQ A;  1OID A;  3H68 A;  5JPF A;  2ZBM A;  1II7 A;  4ZVZ A;  3ZXN A;  2YEQ A;  3AUZ A;  4H2B A;  1IT6 A;  5DNY A;  2ZOA A;  4ORA A;  3DOR A;  1M63 A;  3FLO A;  4L8K A;  1FC6 A;  4XPN A;  2BCD A;  2YVT A;  4OR9 A;  2BQ8 X;  2A22 A;  2DXN A;  1WAR A;  3V97 A;  1AUZ A;  2O8A A;  4UT2 A;  3T1I A;  1TCO A;  3EGH A;  5EZB A;  3K7V C;  3H62 B;  3IHA A;  3E7A A;  5C1V A;  1FCF A;  4DSY A;  3RL3 A;  5HPE A;  3IH9 A;  1UF3 A;  3IB8 A;  3V4Y A;  4H1S A;  4L1C A;  3AGD A;  1S3M A;  4UT3 B;  1TIL B;  2HYO A;  4TUG A;  3GK7 A;  1MF8 A;  2AHD A;  1N6E A;  1HP1 A;  1J7X A;  1XM7 A;  3QFO A;  1HO5 A;  1AUI A;  4FCX A;  3D3U A;  3DSD A;  1V0E A;  5EQV A;  3MGL A;  2KLN A;  4QTP A;  3C0K A;  3RQZ A;  1OIE A;  4HD0 A;  5J28 A; 
#chains in the Genus database with same CATH homology
 3H64 A;  5JJT A;  1U32 A;  3ZU0 A;  3DSC A;  4V0W A;  3C9F A;  4FBW A;  4KKZ A;  1SU1 A;  2RRL A;  2QFR A;  4KBP A;  4H2I A;  2NYL C;  4LTY A;  4UWQ A;  2Q8U A;  3N5U A;  4Q7F A;  1KBP A;  1S3L A;  4FBK A;  1G5B A;  2NYM C;  3DJA A;  4JC0 A;  5F3W A;  3RL5 A;  1JK7 A;  2Z06 A;  3QFM A;  4GHN A;  2ZO9 B;  4O4K A;  2QJC A;  1UTE A;  1QHW A;  4AEJ A;  2QFP A;  1N6F A;  3LL8 A;  3P71 C;  1OI8 A;  4I5N C;  3DW8 C;  4J6O A;  1S95 A;  2R17 A;  5JPE A;  1FC9 A;  3H69 A;  3THO B;  4V0X A;  3QFK A;  4V0V A;  2Z1A A;  3IB7 A;  3KBP A;  2DXL A;  2IAE C;  2Z72 A;  2WDE A;  2XMO A;  4YKE A;  3H60 A;  3QFN A;  3GHF A;  1K32 A;  3GMF A;  1Z2X A;  3H61 A;  4NZV A;  4WWL A;  1W24 A;  4LU9 A;  4M0V A;  4MOY A;  1T70 A;  1T71 A;  1NNW A;  1USH A;  2BDX A;  4DHL A;  3K50 A;  3ZTV A;  2NXF A;  2WDD A;  3AV0 A;  3EGG A;  3FGA C;  3H63 A;  2GJU A;  3PSN A;  4O5G A;  1FC7 A;  4I5L C;  3H67 A;  2HYP A;  2IE4 C;  4F0Z A;  4UT3 A;  3IVE A;  1XZW A;  4ORB A;  3K7W C;  3RL4 A;  3THN A;  3E7B A;  1FJM A;  4JA9 A;  5INB A;  1WAO 1;  4TUI A;  4MOV A;  1BPL A;  4O43 A;  4AE2 A;  2IE3 C;  5IOH A;  4B2O A;  4MP0 A;  4H2F A;  3QG5 C;  4ZX2 A;  3IVD A;  3JYF A;  2HY1 A;  1V73 A;  2WDC A;  2P6B A;  3CK2 A;  3H66 A;  1Z2W A;  2JOG A;  1S3N A;  3MOG A;  3D03 A;  4O24 A;  2DFJ A;  3ICF A;  5GTU A;  1N6D A;  4IYP C;  2USH A;  3DUP A;  1S70 A;  2NPP C;  3GVE A;  1HPU A;  2CV9 A;  3E0J A;  3PSO A;  4H2G A;  4IL1 A;  4ORC A;  4JA7 A;  2WDF A;  1S8E A;  2O8G A;  3TGH A;  4G9J A;  4H1Y P;  2KKN A;  1QFC A;  3C5W C;  4LAC C;  5B8I A;  4DT2 A;  4FBQ A;  3HVQ A;  1OID A;  3H68 A;  5JPF A;  2ZBM A;  1II7 A;  4ZVZ A;  2YEQ A;  4H2B A;  3AUZ A;  5DNY A;  1IT6 A;  2ZOA A;  4ORA A;  3DOR A;  1M63 A;  3FLO A;  4L8K A;  1FC6 A;  4XPN A;  2BCD A;  2YVT A;  4OR9 A;  2BQ8 X;  2A22 A;  2DXN A;  1WAR A;  2O8A A;  4UT2 A;  3T1I A;  1TCO A;  3EGH A;  3K7V C;  3H62 B;  5C1V A;  3E7A A;  1FCF A;  4DSY A;  3RL3 A;  5HPE A;  1UF3 A;  3IB8 A;  3V4Y A;  4H1S A;  4L1C A;  1S3M A;  4UT3 B;  2HYO A;  4TUG A;  1MF8 A;  2AHD A;  1N6E A;  1HP1 A;  1J7X A;  1XM7 A;  3QFO A;  1HO5 A;  1AUI A;  4FCX A;  3DSD A;  5EQV A;  3RQZ A;  1OIE A;  4HD0 A;  5J28 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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