2ZOAA

Malonate-bound structure of the glycerophosphodiesterase from enterobacter aerogenes (gpdq) collected at 1.280 angstrom
Total Genus 77
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
77
sequence length
271
structure length
271
Chain Sequence
MLLAHISDTHFRSRGEKLYGFIDVNAANADVVSQLNALRERPDAVVVSGDIVNCGRPEEYQVARQILGSLNYPLYLIPGNHDDKALFLEYLQPLCPQLGSDANNMRCAVDDFATRLLFIDSSRAGTSKGWLTDETISWLEAQLFEGGDKPATIFMHHPPLPLGNAQMDPIACENGHRLLALVERFPSLTRIFCGHNHSLTMTQYRQALISTLPGTVHQVPYCHADTDPYYDLSPASCLMHRQVGEQWVSYQHSLAHYAGPWLYDENISCPT
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Phosphohydrolase
publication title Malonate-bound structure of the glycerophosphodiesterase from Enterobacter aerogenes (GpdQ) and characterization of the native Fe2+ metal-ion preference.
pubmed doi rcsb
source organism Enterobacter aerogenes
total genus 77
structure length 271
sequence length 271
chains with identical sequence B
ec nomenclature ec 3.1.4.46: Glycerophosphodiester phosphodiesterase.
pdb deposition date 2008-05-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00149 Metallophos Calcineurin-like phosphoesterase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.750.180 Alpha Beta 2-Layer Sandwich Transcription Regulator spoIIAA Transcription Regulator spoIIAA 2zoaA02
3.60.21.40 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 2zoaA01
2ZO9B 2DXNA 2ZOAA 3D03A 2DXLA
chains in the Genus database with same CATH superfamily
4LTYA 5F3WA 2OASA 3GVKA 3K50A 4H1SA 3QFMA 4LU9A 5EUWA 2NPPC 3LKLA 3JYFA 4YKEA 4JC0A 1VC1A 3V97A 2YEQA 2DXNA 4ORCA 2BDXA 3IVEA 3QFOA 4XS5A 3GVJA 2NYLC 4HD0A 3PSOA 4MOVA 4V0VA 1H4ZA 2HYPA 1TIDB 2ZO9B 3THOB 4AE2A 3RL5A 5GTUA 1U32A 3H60A 4MOYA 1N6DA 2Q8UA 4O4KA 4WWLA 1FC6A 2DXLA 2HY1A 3E7BA 3AUZA 3H68A 3H61A 4GHNA 2ZOAA 3EGHA 4UT2A 1FCFA 3TGHA 1J7XA 3THNA 1S8EA 2USHA 1IT6A 3IVDA 1HF2A 2O8GA 3E0JA 4H2IA 3ZTVA 4ZVZA 3VSEA 1WXXA 1THNB 1SBOA 5EUZA 5EUXA 4LACC 3FLOA 3QFNA 1UF3A 3F43A 2GJUA 3KBPA 3DUPA 4H2BA 3T1IA 3MOGA 5JJTA 2NYMC 4ORBA 1QFCA 1JK7A 5HPEA 3AGEA 5B8IA 1WAO1 4O43A 4ZX2A 4HYLA 4DMGA 3C0KA 2WDCA 4M0VA 4TUGA 1XZWA 3GMFA 3ZXNA 2HYOA 4KKZA 1HO5A 1HP1A 3C9FA 3H62B 2CWWA 4V0XA 5DNYA 1KBPA 1XM7A 2ZBMA 1K32A 3IHBA 4B2OA 1V0FA 4JA7A 2RRLA 3GK7A 3NY7A 3OIRA 1QHWA 3QG5C 4H1YP 4JA9A 2AHDA 3D03A 1OIDA 1OI8A 3LDFA 2O8AA 2CV9A 2QFPA 1T71A 2YVTA 2Z1AA 3EGGA 4H2FA 3AV0A 3K7WC 2A22A 1SU1A 1V73A 2KLNA 1S95A 2WDDA 1AUZA 3V8VA 3H66A 4FBKA 5EUSA 4DT2A 4TUIA 3RQZA 1II7A 4DSYA 4UT3A 1S3MA 1WXWA 3PSNA 3QDQA 4G9JA 3DSCA 3IH9A 2B78A 2JOGA 1T70A 4UT3B 3RL4A 3RL3A 1G5BA 1WARA 3DSDA 1AUIA 4DGHA 3E7AA 4FBQA 2P6BA 2KA5A 4H2GA 3DW8C 2Z72A 3P71C 3N5UA 2VY9A 3EH7A 3C5WC 3IH8A 3JU4A 3CK2A 4DHLA 3GHFA 2DFJA 4J6OA 3D3UA 1M63A 2BCDA 4L1CA 2IAEC 4NZVA 5EQVA 3LLOA 1FJMA 2QFRA 4HIZA 5EZBA 3ZU0A 1HPUA 1FC9A 1S3NA 1N6FA 1TH8B 3H64A 2IE3C 1USHA 3HVQA 3V4YA 1Z2XA 2AS0A 3DORA 4V0WA 5INBA 1S70A 4OR9A 2BQ8X 2KKNA 2QJCA 1TCOA 2XMOA 4I5NC 1W24A 1T6RA 5J28A 3AGDA 3ZTBA 1FC7A 1UTEA 2R17A 4DGFA 1V0EA 4O24A 3GVLA 2NXFA 3ICFA 4FBWA 4UWQA 1BPLA 1OIEA 5JPFA 4KBPA 2Z06A 4I5LC 2WDEA 2IE4C 4AEJA 4ORAA 4XPNA 4F0ZA 3OIZA 5JPEA 1NNWA 4IYPC 4FCXA 2WDFA 4IL1A 3H69A 1H4YA 1Z2WA 3GVEA 1MF8A 4QTPA 3LL8A 3H63A 1H4XA 1N6EA 5C1VA 5EUUA 3DJAA 3FGAC 3QFKA 1BUZA 3IHAA 4L8KA 1TILB 3IB7A 3H67A 5IOHA 3K7VC 3IF5A 4Q7FA 4MP0A 4O5GA 3MGLA 1S3LA 3IB8A 3T6OA
chains in the Genus database with same CATH topology
4LTYA 3K50A 4H1SA 3QFMA 4LU9A 2NPPC 3JYFA 4YKEA 4JC0A 2YEQA 2DXNA 4ORCA 2BDXA 3IVEA 3QFOA 4HD0A 2NYLC 4MOVA 3PSOA 4V0VA 2HYPA 3THOB 2ZO9B 4AE2A 3RL5A 5GTUA 1U32A 3H60A 4MOYA 1N6DA 2Q8UA 4O4KA 4WWLA 1FC6A 2DXLA 2HY1A 3E7BA 3AUZA 3H68A 3H61A 2ZOAA 4GHNA 3EGHA 4UT2A 1FCFA 3TGHA 1J7XA 3THNA 1S8EA 2USHA 1IT6A 3IVDA 4H2IA 2O8GA 3E0JA 3ZTVA 4ZVZA 4LACC 3FLOA 3QFNA 1UF3A 3KBPA 2GJUA 3T1IA 3DUPA 4H2BA 3MOGA 5JJTA 2NYMC 4ORBA 1QFCA 1JK7A 5HPEA 5B8IA 1WAO1 4O43A 4ZX2A 2WDCA 4M0VA 4TUGA 1XZWA 3GMFA 4KKZA 2HYOA 1HO5A 1HP1A 3C9FA 3H62B 4V0XA 5DNYA 1KBPA 1XM7A 1K32A 4B2OA 4JA7A 2RRLA 1QHWA 4JA9A 3QG5C 4H1YP 2AHDA 3D03A 1OIDA 1OI8A 2O8AA 2QFPA 2CV9A 2YVTA 1T71A 2Z1AA 2ZBMA 3EGGA 4H2FA 3AV0A 3K7WC 2A22A 1SU1A 1V73A 1S95A 4FBKA 2WDDA 3H66A 4DT2A 4TUIA 3RQZA 1II7A 4DSYA 4UT3A 1S3MA 3PSNA 3DSCA 4G9JA 2JOGA 1T70A 4UT3B 3RL4A 3RL3A 1G5BA 1WARA 3DSDA 1AUIA 3E7AA 4FBQA 2P6BA 4H2GA 3DW8C 5INBA 3P71C 3N5UA 3C5WC 3CK2A 4DHLA 3GHFA 2DFJA 4J6OA 2BCDA 1M63A 2IAEC 4L1CA 4NZVA 5EQVA 5F3WA 1FJMA 2QFRA 3ZU0A 1HPUA 1FC9A 1S3NA 1N6FA 3H64A 2IE3C 1USHA 3HVQA 3V4YA 1Z2XA 3DORA 4V0WA 1S70A 4OR9A 2BQ8X 2KKNA 2QJCA 1TCOA 2XMOA 4I5NC 1W24A 5J28A 1FC7A 1UTEA 2R17A 4O24A 2NXFA 3ICFA 4FBWA 4UWQA 1BPLA 1OIEA 5JPFA 4KBPA 2Z06A 4I5LC 2WDEA 2IE4C 4AEJA 4ORAA 4XPNA 4F0ZA 5JPEA 1NNWA 4IYPC 4FCXA 2WDFA 4IL1A 3H69A 3GVEA 1Z2WA 1MF8A 3LL8A 3H63A 5C1VA 1N6EA 3DJAA 3FGAC 3QFKA 5IOHA 4L8KA 3IB7A 3H67A 3K7VC 4Q7FA 4MP0A 4O5GA 2Z72A 1S3LA 3IB8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2ZO9 B;  2DXN A;  2ZOA A;  3D03 A;  2DXL A; 
#chains in the Genus database with same CATH topology
 4LTY A;  5F3W A;  2OAS A;  3GVK A;  3K50 A;  4H1S A;  3QFM A;  4LU9 A;  5EUW A;  2NPP C;  3LKL A;  3JYF A;  4YKE A;  4JC0 A;  1VC1 A;  3V97 A;  2YEQ A;  2DXN A;  4ORC A;  2BDX A;  3IVE A;  3QFO A;  4XS5 A;  3GVJ A;  2NYL C;  4HD0 A;  3PSO A;  4MOV A;  4V0V A;  1H4Z A;  2HYP A;  1TID B;  2ZO9 B;  3THO B;  4AE2 A;  3RL5 A;  5GTU A;  1U32 A;  3H60 A;  4MOY A;  1N6D A;  2Q8U A;  4O4K A;  4WWL A;  1FC6 A;  2DXL A;  2HY1 A;  3E7B A;  3AUZ A;  3H68 A;  3H61 A;  4GHN A;  2ZOA A;  3EGH A;  4UT2 A;  1FCF A;  3TGH A;  1J7X A;  3THN A;  1S8E A;  2USH A;  1IT6 A;  3IVD A;  1HF2 A;  2O8G A;  3E0J A;  4H2I A;  3ZTV A;  4ZVZ A;  3VSE A;  1WXX A;  1THN B;  1SBO A;  5EUZ A;  5EUX A;  4LAC C;  3FLO A;  3QFN A;  1UF3 A;  3F43 A;  2GJU A;  3KBP A;  3DUP A;  4H2B A;  3T1I A;  3MOG A;  5JJT A;  2NYM C;  4ORB A;  1QFC A;  1JK7 A;  5HPE A;  3AGE A;  5B8I A;  1WAO 1;  4O43 A;  4ZX2 A;  4HYL A;  4DMG A;  3C0K A;  2WDC A;  4M0V A;  4TUG A;  1XZW A;  3GMF A;  3ZXN A;  2HYO A;  4KKZ A;  1HO5 A;  1HP1 A;  3C9F A;  3H62 B;  2CWW A;  4V0X A;  5DNY A;  1KBP A;  1XM7 A;  2ZBM A;  1K32 A;  3IHB A;  4B2O A;  1V0F A;  4JA7 A;  2RRL A;  3GK7 A;  3NY7 A;  3OIR A;  1QHW A;  3QG5 C;  4H1Y P;  4JA9 A;  2AHD A;  3D03 A;  1OID A;  1OI8 A;  3LDF A;  2O8A A;  2CV9 A;  2QFP A;  1T71 A;  2YVT A;  2Z1A A;  3EGG A;  4H2F A;  3AV0 A;  3K7W C;  2A22 A;  1SU1 A;  1V73 A;  2KLN A;  1S95 A;  2WDD A;  1AUZ A;  3V8V A;  3H66 A;  4FBK A;  5EUS A;  4DT2 A;  4TUI A;  3RQZ A;  1II7 A;  4DSY A;  4UT3 A;  1S3M A;  1WXW A;  3PSN A;  3QDQ A;  4G9J A;  3DSC A;  3IH9 A;  2B78 A;  2JOG A;  1T70 A;  4UT3 B;  3RL4 A;  3RL3 A;  1G5B A;  1WAR A;  3DSD A;  1AUI A;  4DGH A;  3E7A A;  4FBQ A;  2P6B A;  2KA5 A;  4H2G A;  3DW8 C;  2Z72 A;  3P71 C;  3N5U A;  2VY9 A;  3EH7 A;  3C5W C;  3IH8 A;  3JU4 A;  3CK2 A;  4DHL A;  3GHF A;  2DFJ A;  4J6O A;  3D3U A;  1M63 A;  2BCD A;  4L1C A;  2IAE C;  4NZV A;  5EQV A;  3LLO A;  1FJM A;  2QFR A;  4HIZ A;  5EZB A;  3ZU0 A;  1HPU A;  1FC9 A;  1S3N A;  1N6F A;  1TH8 B;  3H64 A;  2IE3 C;  1USH A;  3HVQ A;  3V4Y A;  1Z2X A;  2AS0 A;  3DOR A;  4V0W A;  5INB A;  1S70 A;  4OR9 A;  2BQ8 X;  2KKN A;  2QJC A;  1TCO A;  2XMO A;  4I5N C;  1W24 A;  1T6R A;  5J28 A;  3AGD A;  3ZTB A;  1FC7 A;  1UTE A;  2R17 A;  4DGF A;  1V0E A;  4O24 A;  3GVL A;  2NXF A;  3ICF A;  4FBW A;  4UWQ A;  1BPL A;  1OIE A;  5JPF A;  4KBP A;  2Z06 A;  4I5L C;  2WDE A;  2IE4 C;  4AEJ A;  4ORA A;  4XPN A;  4F0Z A;  3OIZ A;  5JPE A;  1NNW A;  4IYP C;  4FCX A;  2WDF A;  4IL1 A;  3H69 A;  1H4Y A;  1Z2W A;  3GVE A;  1MF8 A;  4QTP A;  3LL8 A;  3H63 A;  1H4X A;  1N6E A;  5C1V A;  5EUU A;  3DJA A;  3FGA C;  3QFK A;  1BUZ A;  3IHA A;  4L8K A;  1TIL B;  3IB7 A;  3H67 A;  5IOH A;  3K7V C;  3IF5 A;  4Q7F A;  4MP0 A;  4O5G A;  3MGL A;  1S3L A;  3IB8 A;  3T6O A; 
#chains in the Genus database with same CATH homology
 4LTY A;  3K50 A;  4H1S A;  3QFM A;  4LU9 A;  2NPP C;  3JYF A;  4YKE A;  4JC0 A;  2YEQ A;  2DXN A;  4ORC A;  2BDX A;  3IVE A;  3QFO A;  4HD0 A;  2NYL C;  4MOV A;  3PSO A;  4V0V A;  2HYP A;  3THO B;  2ZO9 B;  4AE2 A;  3RL5 A;  5GTU A;  1U32 A;  3H60 A;  4MOY A;  1N6D A;  2Q8U A;  4O4K A;  4WWL A;  1FC6 A;  2DXL A;  2HY1 A;  3E7B A;  3AUZ A;  3H68 A;  3H61 A;  2ZOA A;  4GHN A;  3EGH A;  4UT2 A;  1FCF A;  3TGH A;  1J7X A;  3THN A;  1S8E A;  2USH A;  1IT6 A;  3IVD A;  4H2I A;  2O8G A;  3E0J A;  3ZTV A;  4ZVZ A;  4LAC C;  3FLO A;  3QFN A;  1UF3 A;  3KBP A;  2GJU A;  3T1I A;  3DUP A;  4H2B A;  3MOG A;  5JJT A;  2NYM C;  4ORB A;  1QFC A;  1JK7 A;  5HPE A;  5B8I A;  1WAO 1;  4O43 A;  4ZX2 A;  2WDC A;  4M0V A;  4TUG A;  1XZW A;  3GMF A;  4KKZ A;  2HYO A;  1HO5 A;  1HP1 A;  3C9F A;  3H62 B;  4V0X A;  5DNY A;  1KBP A;  1XM7 A;  1K32 A;  4B2O A;  4JA7 A;  2RRL A;  1QHW A;  4JA9 A;  3QG5 C;  4H1Y P;  2AHD A;  3D03 A;  1OID A;  1OI8 A;  2O8A A;  2QFP A;  2CV9 A;  2YVT A;  1T71 A;  2Z1A A;  2ZBM A;  3EGG A;  4H2F A;  3AV0 A;  3K7W C;  2A22 A;  1SU1 A;  1V73 A;  1S95 A;  4FBK A;  2WDD A;  3H66 A;  4DT2 A;  4TUI A;  3RQZ A;  1II7 A;  4DSY A;  4UT3 A;  1S3M A;  3PSN A;  3DSC A;  4G9J A;  2JOG A;  1T70 A;  4UT3 B;  3RL4 A;  3RL3 A;  1G5B A;  1WAR A;  3DSD A;  1AUI A;  3E7A A;  4FBQ A;  2P6B A;  4H2G A;  3DW8 C;  5INB A;  3P71 C;  3N5U A;  3C5W C;  3CK2 A;  4DHL A;  3GHF A;  2DFJ A;  4J6O A;  2BCD A;  1M63 A;  2IAE C;  4L1C A;  4NZV A;  5EQV A;  5F3W A;  1FJM A;  2QFR A;  3ZU0 A;  1HPU A;  1FC9 A;  1S3N A;  1N6F A;  3H64 A;  2IE3 C;  1USH A;  3HVQ A;  3V4Y A;  1Z2X A;  3DOR A;  4V0W A;  1S70 A;  4OR9 A;  2BQ8 X;  2KKN A;  2QJC A;  1TCO A;  2XMO A;  4I5N C;  1W24 A;  5J28 A;  1FC7 A;  1UTE A;  2R17 A;  4O24 A;  2NXF A;  3ICF A;  4FBW A;  4UWQ A;  1BPL A;  1OIE A;  5JPF A;  4KBP A;  2Z06 A;  4I5L C;  2WDE A;  2IE4 C;  4AEJ A;  4ORA A;  4XPN A;  4F0Z A;  5JPE A;  1NNW A;  4IYP C;  4FCX A;  2WDF A;  4IL1 A;  3H69 A;  3GVE A;  1Z2W A;  1MF8 A;  3LL8 A;  3H63 A;  5C1V A;  1N6E A;  3DJA A;  3FGA C;  3QFK A;  5IOH A;  4L8K A;  3IB7 A;  3H67 A;  3K7V C;  4Q7F A;  4MP0 A;  4O5G A;  2Z72 A;  1S3L A;  3IB8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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