2ZOAA

Malonate-bound structure of the glycerophosphodiesterase from enterobacter aerogenes (gpdq) collected at 1.280 angstrom
Total Genus 77
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
77
sequence length
271
structure length
271
Chain Sequence
b'MLLAHISDTHFRSRGEKLYGFIDVNAANADVVSQLNALRERPDAVVVSGDIVNCGRPEEYQVARQILGSLNYPLYLIPGNHDDKALFLEYLQPLCPQLGSDANNMRCAVDDFATRLLFIDSSRAGTSKGWLTDETISWLEAQLFEGGDKPATIFMHHPPLPLGNAQMDPIACENGHRLLALVERFPSLTRIFCGHNHSLTMTQYRQALISTLPGTVHQVPYCHADTDPYYDLSPASCLMHRQVGEQWVSYQHSLAHYAGPWLYDENISCPT'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Phosphohydrolase
publication title Malonate-bound structure of the glycerophosphodiesterase from Enterobacter aerogenes (GpdQ) and characterization of the native Fe2+ metal-ion preference.
pubmed doi rcsb
source organism Enterobacter aerogenes
molecule tags Hydrolase
total genus 77
structure length 271
sequence length 271
chains with identical sequence B
ec nomenclature ec 3.1.4.46: Glycerophosphodiester phosphodiesterase.
pdb deposition date 2008-05-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00149 Metallophos Calcineurin-like phosphoesterase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.750.180 Alpha Beta 2-Layer Sandwich Transcription Regulator spoIIAA Transcription Regulator spoIIAA 2zoaA02
3.60.21.40 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 2zoaA01
2DXNA 2DXLA 3D03A 2ZOAA 2ZO9B
chains in the Genus database with same CATH superfamily
4H2BA 1FC9A 3GHFA 3NY7A 1MF8A 2USHA 2Z1AA 4H1SA 1TCOA 4IYPC 4ORBA 3RQZA 2WDCA 3H64A 4H2FA 1T6RA 3GVLA 4DHLA 2QJCA 1FC7A 2WDDA 4YKEA 4JC0A 4UWQA 3K7VC 2ZO9B 1QFCA 1XM7A 4AE2A 2CV9A 4WWLA 3T1IA 1TILB 3CK2A 3V4YA 4DGFA 2A22A 3ZXNA 1AUZA 3D03A 4ZVZA 3IHBA 2Q8UA 4B2OA 1NNWA 2ZBMA 3H61A 4UT3A 3E0JA 5IOHA 3QFOA 3H68A 2NYLC 1WXXA 2CWWA 4FBQA 2NYMC 5EQVA 1N6DA 2B78A 3P71C 1H4XA 3E7AA 1FC6A 3N5UA 4TUGA 2AS0A 3EH7A 5JPEA 3H63A 4IL1A 2QFRA 2DXNA 1IT6A 2BDXA 4JA9A 4L8KA 1T70A 2NXFA 3HVQA 3OIZA 4OR9A 1S70A 4XS5A 1S8EA 1WAO1 5INBA 3E7BA 5DNYA 1N6EA 2HY1A 1II7A 4M0VA 4KBPA 1VC1A 2O8AA 1Z2XA 4J6OA 3ZU0A 1S95A 3C9FA 3D3UA 1HO5A 3EGHA 1H4ZA 5EUWA 2WDEA 4AEJA 1KBPA 5C1VA 5GTUA 3LDFA 3GVJA 2O8GA 2RRLA 5EUUA 3DW8C 1AUIA 3V8VA 1WXWA 3VSEA 1SBOA 4DT2A 1THNB 3RL5A 4HD0A 3DSDA 2IAEC 4Q7FA 3QFKA 1K32A 3EGGA 1QHWA 3GVEA 4LU9A 5F3WA 1W24A 4FCXA 4G9JA 3ZTVA 3AV0A 2OASA 3K7WC 4V0WA 1JK7A 4DMGA 1WARA 3IF5A 2NPPC 1BPLA 3IH9A 4O24A 4V0VA 1OIEA 5HPEA 1G5BA 3TGHA 4LACC 2QFPA 1U32A 3LLOA 1BUZA 3T6OA 4O4KA 3AUZA 3IB7A 4KKZA 3GK7A 1XZWA 4H2IA 3C0KA 2YVTA 3OIRA 1TIDB 5EUZA 3MGLA 4FBKA 1UTEA 4MOYA 4TUIA 2KLNA 3IB8A 3K50A 2BCDA 5B8IA 5JPFA 4MOVA 3KBPA 3IH8A 1SU1A 4QTPA 3QFNA 4V0XA 1V0EA 4HYLA 5J28A 4H2GA 3ICFA 3GVKA 4O43A 3THOB 5EZBA 3GMFA 1FJMA 3F43A 1J7XA 3IVEA 3THNA 1M63A 3DORA 4DGHA 3V97A 5EUSA 1S3LA 2YEQA 2DFJA 3C5WC 3LKLA 3MOGA 3FLOA 3H67A 4UT3B 1T71A 4I5NC 4FBWA 4I5LC 2JOGA 4UT2A 4L1CA 1OIDA 1FCFA 2WDFA 2Z06A 4HIZA 4O5GA 3JYFA 4GHNA 2R17A 3JU4A 2GJUA 4H1YP 1HP1A 4ORCA 1TH8B 2AHDA 4LTYA 1HPUA 4NZVA 1OI8A 2XMOA 3RL3A 3H66A 3ZTBA 2KA5A 4XPNA 4ZX2A 1V0FA 1UF3A 3QFMA 5EUXA 4MP0A 3IVDA 5JJTA 2VY9A 1USHA 2HYOA 2HYPA 2IE3C 3H60A 1HF2A 1S3NA 1H4YA 1S3MA 3H69A 3LL8A 2Z72A 4ORAA 3PSOA 3DSCA 4JA7A 3QG5C 1N6FA 2P6BA 1V73A 2BQ8X 3QDQA 3IHAA 2DXLA 3H62B 2KKNA 3AGEA 4F0ZA 4DSYA 3FGAC 2ZOAA 3DUPA 1Z2WA 3PSNA 3RL4A 2IE4C 3DJAA 3AGDA
chains in the Genus database with same CATH topology
4H2BA 1FC9A 3GHFA 1MF8A 2USHA 2Z1AA 4H1SA 1TCOA 3DJAA 4IYPC 4ORBA 3RQZA 2WDCA 3H64A 4H2FA 4DHLA 2QJCA 1FC7A 2WDDA 4YKEA 4JC0A 4UWQA 3K7VC 2ZO9B 1QFCA 1XM7A 4AE2A 2CV9A 4WWLA 3T1IA 3CK2A 3V4YA 2A22A 4ZVZA 5B8IA 3D03A 4B2OA 2Q8UA 1NNWA 2ZBMA 3H61A 4UT3A 3E0JA 5IOHA 3QFOA 3H68A 2NYLC 4FBQA 2NYMC 5EQVA 1N6DA 3P71C 3E7AA 1FC6A 3N5UA 4TUGA 5JPEA 3H63A 4IL1A 2QFRA 2DXNA 1IT6A 2BDXA 4JA9A 4L8KA 1T70A 2NXFA 3HVQA 4OR9A 1S70A 1WAO1 1S8EA 5INBA 3E7BA 5DNYA 1N6EA 2HY1A 1II7A 4M0VA 4KBPA 3ZU0A 2O8AA 1Z2XA 4J6OA 1S95A 3C9FA 1HO5A 3EGHA 2WDEA 4AEJA 1KBPA 5C1VA 5GTUA 2O8GA 2RRLA 3DW8C 1AUIA 4DT2A 3RL5A 4HD0A 3DSDA 2IAEC 4Q7FA 3QFKA 1K32A 3EGGA 1QHWA 3GVEA 4LU9A 5F3WA 1W24A 4FCXA 4G9JA 3ZTVA 3AV0A 3K7WC 4V0WA 1JK7A 1WARA 2NPPC 1BPLA 4O24A 4V0VA 1OIEA 5HPEA 1G5BA 3TGHA 2QFPA 1U32A 4O4KA 3AUZA 3IB7A 4KKZA 1XZWA 4H2IA 2YVTA 4FBKA 1UTEA 4MOYA 4TUIA 5JPFA 3IB8A 3K50A 2BCDA 4MOVA 3KBPA 1SU1A 3QFNA 4V0XA 5J28A 4H2GA 3ICFA 4O43A 3THOB 3GMFA 1FJMA 3IVEA 3THNA 1M63A 3DORA 1S3LA 3C5WC 4XPNA 2YEQA 2DFJA 3MOGA 3FLOA 3H67A 4UT3B 1T71A 4I5NC 4FBWA 4I5LC 2JOGA 4UT2A 4L1CA 1OIDA 1FCFA 2WDFA 2Z06A 4O5GA 3JYFA 4GHNA 2R17A 2GJUA 4H1YP 1HP1A 4ORCA 2AHDA 4LTYA 4NZVA 1HPUA 1OI8A 2XMOA 3RL3A 3H66A 4ZX2A 3QFMA 1UF3A 4MP0A 3IVDA 5JJTA 1USHA 2HYOA 2HYPA 2IE3C 3H60A 3DSCA 1S3NA 1S3MA 3H69A 3LL8A 4ORAA 2Z72A 3PSOA 4JA7A 3QG5C 1N6FA 2P6BA 1V73A 2BQ8X 3H62B 2DXLA 2KKNA 4F0ZA 4DSYA 3FGAC 2ZOAA 3DUPA 1Z2WA 3PSNA 3RL4A 4LACC 1J7XA 2IE4C
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2DXN A;  2DXL A;  3D03 A;  2ZOA A;  2ZO9 B; 
#chains in the Genus database with same CATH topology
 4H2B A;  1FC9 A;  3GHF A;  3NY7 A;  1MF8 A;  2USH A;  2Z1A A;  4H1S A;  1TCO A;  4IYP C;  4ORB A;  3RQZ A;  2WDC A;  3H64 A;  4H2F A;  1T6R A;  3GVL A;  4DHL A;  2QJC A;  1FC7 A;  2WDD A;  4YKE A;  4JC0 A;  4UWQ A;  3K7V C;  2ZO9 B;  1QFC A;  1XM7 A;  4AE2 A;  2CV9 A;  4WWL A;  3T1I A;  1TIL B;  3CK2 A;  3V4Y A;  4DGF A;  2A22 A;  3ZXN A;  1AUZ A;  3D03 A;  4ZVZ A;  3IHB A;  2Q8U A;  4B2O A;  1NNW A;  2ZBM A;  3H61 A;  4UT3 A;  3E0J A;  5IOH A;  3QFO A;  3H68 A;  2NYL C;  1WXX A;  2CWW A;  4FBQ A;  2NYM C;  5EQV A;  1N6D A;  2B78 A;  3P71 C;  1H4X A;  3E7A A;  1FC6 A;  3N5U A;  4TUG A;  2AS0 A;  3EH7 A;  5JPE A;  3H63 A;  4IL1 A;  2QFR A;  2DXN A;  1IT6 A;  2BDX A;  4JA9 A;  4L8K A;  1T70 A;  2NXF A;  3HVQ A;  3OIZ A;  4OR9 A;  1S70 A;  4XS5 A;  1S8E A;  1WAO 1;  5INB A;  3E7B A;  5DNY A;  1N6E A;  2HY1 A;  1II7 A;  4M0V A;  4KBP A;  1VC1 A;  2O8A A;  1Z2X A;  4J6O A;  3ZU0 A;  1S95 A;  3C9F A;  3D3U A;  1HO5 A;  3EGH A;  1H4Z A;  5EUW A;  2WDE A;  4AEJ A;  1KBP A;  5C1V A;  5GTU A;  3LDF A;  3GVJ A;  2O8G A;  2RRL A;  5EUU A;  3DW8 C;  1AUI A;  3V8V A;  1WXW A;  3VSE A;  1SBO A;  4DT2 A;  1THN B;  3RL5 A;  4HD0 A;  3DSD A;  2IAE C;  4Q7F A;  3QFK A;  1K32 A;  3EGG A;  1QHW A;  3GVE A;  4LU9 A;  5F3W A;  1W24 A;  4FCX A;  4G9J A;  3ZTV A;  3AV0 A;  2OAS A;  3K7W C;  4V0W A;  1JK7 A;  4DMG A;  1WAR A;  3IF5 A;  2NPP C;  1BPL A;  3IH9 A;  4O24 A;  4V0V A;  1OIE A;  5HPE A;  1G5B A;  3TGH A;  4LAC C;  2QFP A;  1U32 A;  3LLO A;  1BUZ A;  3T6O A;  4O4K A;  3AUZ A;  3IB7 A;  4KKZ A;  3GK7 A;  1XZW A;  4H2I A;  3C0K A;  2YVT A;  3OIR A;  1TID B;  5EUZ A;  3MGL A;  4FBK A;  1UTE A;  4MOY A;  4TUI A;  2KLN A;  3IB8 A;  3K50 A;  2BCD A;  5B8I A;  5JPF A;  4MOV A;  3KBP A;  3IH8 A;  1SU1 A;  4QTP A;  3QFN A;  4V0X A;  1V0E A;  4HYL A;  5J28 A;  4H2G A;  3ICF A;  3GVK A;  4O43 A;  3THO B;  5EZB A;  3GMF A;  1FJM A;  3F43 A;  1J7X A;  3IVE A;  3THN A;  1M63 A;  3DOR A;  4DGH A;  3V97 A;  5EUS A;  1S3L A;  2YEQ A;  2DFJ A;  3C5W C;  3LKL A;  3MOG A;  3FLO A;  3H67 A;  4UT3 B;  1T71 A;  4I5N C;  4FBW A;  4I5L C;  2JOG A;  4UT2 A;  4L1C A;  1OID A;  1FCF A;  2WDF A;  2Z06 A;  4HIZ A;  4O5G A;  3JYF A;  4GHN A;  2R17 A;  3JU4 A;  2GJU A;  4H1Y P;  1HP1 A;  4ORC A;  1TH8 B;  2AHD A;  4LTY A;  1HPU A;  4NZV A;  1OI8 A;  2XMO A;  3RL3 A;  3H66 A;  3ZTB A;  2KA5 A;  4XPN A;  4ZX2 A;  1V0F A;  1UF3 A;  3QFM A;  5EUX A;  4MP0 A;  3IVD A;  5JJT A;  2VY9 A;  1USH A;  2HYO A;  2HYP A;  2IE3 C;  3H60 A;  1HF2 A;  1S3N A;  1H4Y A;  1S3M A;  3H69 A;  3LL8 A;  2Z72 A;  4ORA A;  3PSO A;  3DSC A;  4JA7 A;  3QG5 C;  1N6F A;  2P6B A;  1V73 A;  2BQ8 X;  3QDQ A;  3IHA A;  2DXL A;  3H62 B;  2KKN A;  3AGE A;  4F0Z A;  4DSY A;  3FGA C;  2ZOA A;  3DUP A;  1Z2W A;  3PSN A;  3RL4 A;  2IE4 C;  3DJA A;  3AGD A; 
#chains in the Genus database with same CATH homology
 4H2B A;  1FC9 A;  3GHF A;  1MF8 A;  2USH A;  2Z1A A;  4H1S A;  1TCO A;  3DJA A;  4IYP C;  4ORB A;  3RQZ A;  2WDC A;  3H64 A;  4H2F A;  4DHL A;  2QJC A;  1FC7 A;  2WDD A;  4YKE A;  4JC0 A;  4UWQ A;  3K7V C;  2ZO9 B;  1QFC A;  1XM7 A;  4AE2 A;  2CV9 A;  4WWL A;  3T1I A;  3CK2 A;  3V4Y A;  2A22 A;  4ZVZ A;  5B8I A;  3D03 A;  4B2O A;  2Q8U A;  1NNW A;  2ZBM A;  3H61 A;  4UT3 A;  3E0J A;  5IOH A;  3QFO A;  3H68 A;  2NYL C;  4FBQ A;  2NYM C;  5EQV A;  1N6D A;  3P71 C;  3E7A A;  1FC6 A;  3N5U A;  4TUG A;  5JPE A;  3H63 A;  4IL1 A;  2QFR A;  2DXN A;  1IT6 A;  2BDX A;  4JA9 A;  4L8K A;  1T70 A;  2NXF A;  3HVQ A;  4OR9 A;  1S70 A;  1WAO 1;  1S8E A;  5INB A;  3E7B A;  5DNY A;  1N6E A;  2HY1 A;  1II7 A;  4M0V A;  4KBP A;  3ZU0 A;  2O8A A;  1Z2X A;  4J6O A;  1S95 A;  3C9F A;  1HO5 A;  3EGH A;  2WDE A;  4AEJ A;  1KBP A;  5C1V A;  5GTU A;  2O8G A;  2RRL A;  3DW8 C;  1AUI A;  4DT2 A;  3RL5 A;  4HD0 A;  3DSD A;  2IAE C;  4Q7F A;  3QFK A;  1K32 A;  3EGG A;  1QHW A;  3GVE A;  4LU9 A;  5F3W A;  1W24 A;  4FCX A;  4G9J A;  3ZTV A;  3AV0 A;  3K7W C;  4V0W A;  1JK7 A;  1WAR A;  2NPP C;  1BPL A;  4O24 A;  4V0V A;  1OIE A;  5HPE A;  1G5B A;  3TGH A;  2QFP A;  1U32 A;  4O4K A;  3AUZ A;  3IB7 A;  4KKZ A;  1XZW A;  4H2I A;  2YVT A;  4FBK A;  1UTE A;  4MOY A;  4TUI A;  5JPF A;  3IB8 A;  3K50 A;  2BCD A;  4MOV A;  3KBP A;  1SU1 A;  3QFN A;  4V0X A;  5J28 A;  4H2G A;  3ICF A;  4O43 A;  3THO B;  3GMF A;  1FJM A;  3IVE A;  3THN A;  1M63 A;  3DOR A;  1S3L A;  3C5W C;  4XPN A;  2YEQ A;  2DFJ A;  3MOG A;  3FLO A;  3H67 A;  4UT3 B;  1T71 A;  4I5N C;  4FBW A;  4I5L C;  2JOG A;  4UT2 A;  4L1C A;  1OID A;  1FCF A;  2WDF A;  2Z06 A;  4O5G A;  3JYF A;  4GHN A;  2R17 A;  2GJU A;  4H1Y P;  1HP1 A;  4ORC A;  2AHD A;  4LTY A;  4NZV A;  1HPU A;  1OI8 A;  2XMO A;  3RL3 A;  3H66 A;  4ZX2 A;  3QFM A;  1UF3 A;  4MP0 A;  3IVD A;  5JJT A;  1USH A;  2HYO A;  2HYP A;  2IE3 C;  3H60 A;  3DSC A;  1S3N A;  1S3M A;  3H69 A;  3LL8 A;  4ORA A;  2Z72 A;  3PSO A;  4JA7 A;  3QG5 C;  1N6F A;  2P6B A;  1V73 A;  2BQ8 X;  3H62 B;  2DXL A;  2KKN A;  4F0Z A;  4DSY A;  3FGA C;  2ZOA A;  3DUP A;  1Z2W A;  3PSN A;  3RL4 A;  4LAC C;  1J7X A;  2IE4 C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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