2ZOAA

Malonate-bound structure of the glycerophosphodiesterase from enterobacter aerogenes (gpdq) collected at 1.280 angstrom
Total Genus 77
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
77
sequence length
271
structure length
271
Chain Sequence
MLLAHISDTHFRSRGEKLYGFIDVNAANADVVSQLNALRERPDAVVVSGDIVNCGRPEEYQVARQILGSLNYPLYLIPGNHDDKALFLEYLQPLCPQLGSDANNMRCAVDDFATRLLFIDSSRAGTSKGWLTDETISWLEAQLFEGGDKPATIFMHHPPLPLGNAQMDPIACENGHRLLALVERFPSLTRIFCGHNHSLTMTQYRQALISTLPGTVHQVPYCHADTDPYYDLSPASCLMHRQVGEQWVSYQHSLAHYAGPWLYDENISCPT
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
source organism Enterobacter aerogenes
publication title Malonate-bound structure of the glycerophosphodiesterase from Enterobacter aerogenes (GpdQ) and characterization of the native Fe2+ metal-ion preference.
pubmed doi rcsb
molecule keywords Phosphohydrolase
total genus 77
structure length 271
sequence length 271
chains with identical sequence B
ec nomenclature ec 3.1.4.46: Glycerophosphodiester phosphodiesterase.
pdb deposition date 2008-05-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00149 Metallophos Calcineurin-like phosphoesterase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.750.180 Alpha Beta 2-Layer Sandwich Transcription Regulator spoIIAA Transcription Regulator spoIIAA 2zoaA02
3.60.21.40 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 2zoaA01
2DXNA 2ZOAA 3D03A 2ZO9B 2DXLA
chains in the Genus database with same CATH superfamily
4FBKA 2IAEC 4F0ZA 3MOGA 4DGFA 1H4YA 3IH8A 5F3WA 1S70A 5EUUA 3LKLA 2YEQA 1G5BA 3RL3A 2XMOA 1FC7A 3FLOA 3H68A 4FCXA 4ORCA 2R17A 4MP0A 2KA5A 3QG5C 1AUIA 2HYPA 3H63A 3ICFA 3IVEA 2A22A 4UT3B 2QFPA 4UT2A 2RRLA 3DSCA 4MOVA 5EUZA 3CK2A 3H67A 4NZVA 3T1IA 2P6BA 2NXFA 1U32A 3IHBA 2OASA 4YKEA 3RL5A 2ZOAA 4DGHA 2DFJA 1HP1A 5DNYA 4KBPA 1Z2XA 4J6OA 5EUXA 4JC0A 3LL8A 4O5GA 3T6OA 3K7WC 1FC9A 3PSOA 4AEJA 4V0XA 1QHWA 3AGDA 4FBQA 4XS5A 4O4KA 1H4XA 1W24A 3DORA 3IH9A 2NPPC 1XZWA 3E7BA 4WWLA 4UWQA 3E0JA 3ZTBA 3DSDA 4LTYA 4ORAA 5IOHA 4V0VA 1FCFA 3IF5A 1USHA 3ZU0A 3LLOA 3QFOA 2BQ8X 1BPLA 2B78A 1WXWA 1S3MA 2DXLA 3QFKA 3QDQA 3EGHA 3IB7A 4OR9A 1OIDA 1Z2WA 5GTUA 1S3LA 4DT2A 2WDCA 1VC1A 3GVJA 3GVLA 3D03A 2O8AA 4H1YP 1WAO1 3ZTVA 4UT3A 1TIDB 1IT6A 2WDFA 3KBPA 1TH8B 1KBPA 1S3NA 4M0VA 4H1SA 1N6FA 1SBOA 1UF3A 1XM7A 3H61A 3H66A 2KKNA 1FJMA 1HO5A 2ZBMA 3OIZA 3EGGA 4H2IA 4O24A 3C9FA 3E7AA 5B8IA 5JPFA 1NNWA 1S95A 1T70A 3GVKA 1T71A 3AUZA 4XPNA 5INBA 1THNB 4ORBA 4V0WA 2Q8UA 3IHAA 2YVTA 4IYPC 1HPUA 4DSYA 3GVEA 3DW8C 3GK7A 2Z72A 2IE3C 1BUZA 1TILB 1HF2A 3K7VC 1AUZA 2CV9A 2WDDA 5EQVA 3NY7A 3PSNA 4DHLA 4G9JA 1WXXA 2VY9A 3F43A 3EH7A 1QFCA 2O8GA 4IL1A 3OIRA 5EZBA 3GHFA 3H64A 1V0FA 3JU4A 2USHA 3IVDA 4JA9A 3THOB 3H62B 5JJTA 3K50A 5EUWA 1J7XA 1T6RA 4H2FA 4I5NC 4ZX2A 4B2OA 4L8KA 4H2BA 4LU9A 4TUGA 3V8VA 2WDEA 2ZO9B 4DMGA 3DUPA 4H2GA 1V73A 4I5LC 3VSEA 3ZXNA 3V97A 2Z06A 3RL4A 3FGAC 1SU1A 4GHNA 1K32A 3IB8A 1N6EA 2IE4C 4FBWA 3JYFA 5HPEA 3GMFA 2HY1A 1N6DA 4HIZA 1UTEA 2AS0A 2GJUA 3H60A 5J28A 3C0KA 3C5WC 3RQZA 1II7A 1H4ZA 3P71C 3MGLA 1TCOA 2NYLC 3QFMA 4ZVZA 2Z1AA 3AGEA 1OI8A 3HVQA 3QFNA 3DJAA 1WARA 4HD0A 2QFRA 2QJCA 5C1VA 1JK7A 2AHDA 3LDFA 1V0EA 2BCDA 2HYOA 2JOGA 3AV0A 3THNA 3V4YA 4KKZA 4TUIA 1MF8A 2KLNA 4HYLA 2BDXA 3TGHA 5EUSA 1S8EA 4O43A 3N5UA 2DXNA 3D3UA 4QTPA 3H69A 5JPEA 1OIEA 4Q7FA 2CWWA 2NYMC 1FC6A 4LACC 4AE2A 4MOYA 4L1CA 1M63A 4JA7A
chains in the Genus database with same CATH topology
4FBKA 2IAEC 4F0ZA 3MOGA 5F3WA 1S70A 3RL3A 2YEQA 1G5BA 2XMOA 1FC7A 3FLOA 3H68A 4FCXA 4ORCA 2R17A 4MP0A 3QG5C 1AUIA 2HYPA 3H63A 3ICFA 3IVEA 2A22A 4UT3B 2QFPA 4UT2A 2RRLA 3DSCA 4MOVA 3H67A 3CK2A 4NZVA 3T1IA 2P6BA 2NXFA 1U32A 4YKEA 3RL5A 2ZOAA 2DFJA 5DNYA 1HP1A 4KBPA 1Z2XA 4J6OA 4JC0A 3LL8A 4O5GA 3K7WC 1FC9A 3PSOA 4AEJA 4V0XA 1QHWA 4FBQA 4O4KA 1W24A 3DORA 3E7BA 2NPPC 1XZWA 4WWLA 4UWQA 3E0JA 3DSDA 4LTYA 4ORAA 5IOHA 4V0VA 1FCFA 1USHA 3ZU0A 3QFOA 2BQ8X 1BPLA 1S3MA 2DXLA 3QFKA 3EGHA 3IB7A 4OR9A 1OIDA 1Z2WA 5GTUA 1S3LA 4DT2A 2WDCA 4H1YP 3D03A 2O8AA 4UT3A 1WAO1 3ZTVA 1IT6A 2WDFA 3KBPA 1KBPA 1S3NA 4M0VA 4H1SA 1N6FA 1UF3A 1XM7A 3H61A 3H66A 2KKNA 1FJMA 1HO5A 2ZBMA 3EGGA 4H2IA 4O24A 5B8IA 3C9FA 3E7AA 5JPFA 1NNWA 1S95A 1T70A 1T71A 3AUZA 4XPNA 5INBA 4ORBA 4V0WA 2Q8UA 2YVTA 4IYPC 1HPUA 4DSYA 3GVEA 3DW8C 2Z72A 2IE3C 3K7VC 2CV9A 2WDDA 5EQVA 3PSNA 4DHLA 4G9JA 1QFCA 2O8GA 4IL1A 3GHFA 3H64A 3IVDA 2USHA 4JA9A 3THOB 3H62B 5JJTA 3K50A 1J7XA 4H2FA 4I5NC 4ZX2A 4B2OA 4L8KA 4H2BA 4LU9A 4TUGA 2WDEA 2ZO9B 3DUPA 4H2GA 1V73A 4I5LC 2Z06A 3RL4A 3FGAC 1SU1A 4GHNA 1K32A 3IB8A 1N6EA 2IE4C 4FBWA 3JYFA 5HPEA 3GMFA 2HY1A 1N6DA 1UTEA 2GJUA 3H60A 5J28A 3C5WC 3RQZA 1II7A 3P71C 2NYLC 1TCOA 3QFMA 4ZVZA 2Z1AA 3HVQA 1OI8A 3QFNA 4HD0A 3DJAA 1WARA 2QFRA 2QJCA 5C1VA 1JK7A 2AHDA 2BCDA 2JOGA 2HYOA 3AV0A 3V4YA 3THNA 4KKZA 4TUIA 1MF8A 3TGHA 2BDXA 1S8EA 4O43A 3N5UA 2DXNA 3H69A 5JPEA 1OIEA 4Q7FA 2NYMC 4LACC 1FC6A 4AE2A 4MOYA 4L1CA 1M63A 4JA7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2DXN A;  2ZOA A;  3D03 A;  2ZO9 B;  2DXL A; 
#chains in the Genus database with same CATH topology
 4FBK A;  2IAE C;  4F0Z A;  3MOG A;  4DGF A;  1H4Y A;  3IH8 A;  5F3W A;  1S70 A;  5EUU A;  3LKL A;  2YEQ A;  1G5B A;  3RL3 A;  2XMO A;  1FC7 A;  3FLO A;  3H68 A;  4FCX A;  4ORC A;  2R17 A;  4MP0 A;  2KA5 A;  3QG5 C;  1AUI A;  2HYP A;  3H63 A;  3ICF A;  3IVE A;  2A22 A;  4UT3 B;  2QFP A;  4UT2 A;  2RRL A;  3DSC A;  4MOV A;  5EUZ A;  3CK2 A;  3H67 A;  4NZV A;  3T1I A;  2P6B A;  2NXF A;  1U32 A;  3IHB A;  2OAS A;  4YKE A;  3RL5 A;  2ZOA A;  4DGH A;  2DFJ A;  1HP1 A;  5DNY A;  4KBP A;  1Z2X A;  4J6O A;  5EUX A;  4JC0 A;  3LL8 A;  4O5G A;  3T6O A;  3K7W C;  1FC9 A;  3PSO A;  4AEJ A;  4V0X A;  1QHW A;  3AGD A;  4FBQ A;  4XS5 A;  4O4K A;  1H4X A;  1W24 A;  3DOR A;  3IH9 A;  2NPP C;  1XZW A;  3E7B A;  4WWL A;  4UWQ A;  3E0J A;  3ZTB A;  3DSD A;  4LTY A;  4ORA A;  5IOH A;  4V0V A;  1FCF A;  3IF5 A;  1USH A;  3ZU0 A;  3LLO A;  3QFO A;  2BQ8 X;  1BPL A;  2B78 A;  1WXW A;  1S3M A;  2DXL A;  3QFK A;  3QDQ A;  3EGH A;  3IB7 A;  4OR9 A;  1OID A;  1Z2W A;  5GTU A;  1S3L A;  4DT2 A;  2WDC A;  1VC1 A;  3GVJ A;  3GVL A;  3D03 A;  2O8A A;  4H1Y P;  1WAO 1;  3ZTV A;  4UT3 A;  1TID B;  1IT6 A;  2WDF A;  3KBP A;  1TH8 B;  1KBP A;  1S3N A;  4M0V A;  4H1S A;  1N6F A;  1SBO A;  1UF3 A;  1XM7 A;  3H61 A;  3H66 A;  2KKN A;  1FJM A;  1HO5 A;  2ZBM A;  3OIZ A;  3EGG A;  4H2I A;  4O24 A;  3C9F A;  3E7A A;  5B8I A;  5JPF A;  1NNW A;  1S95 A;  1T70 A;  3GVK A;  1T71 A;  3AUZ A;  4XPN A;  5INB A;  1THN B;  4ORB A;  4V0W A;  2Q8U A;  3IHA A;  2YVT A;  4IYP C;  1HPU A;  4DSY A;  3GVE A;  3DW8 C;  3GK7 A;  2Z72 A;  2IE3 C;  1BUZ A;  1TIL B;  1HF2 A;  3K7V C;  1AUZ A;  2CV9 A;  2WDD A;  5EQV A;  3NY7 A;  3PSN A;  4DHL A;  4G9J A;  1WXX A;  2VY9 A;  3F43 A;  3EH7 A;  1QFC A;  2O8G A;  4IL1 A;  3OIR A;  5EZB A;  3GHF A;  3H64 A;  1V0F A;  3JU4 A;  2USH A;  3IVD A;  4JA9 A;  3THO B;  3H62 B;  5JJT A;  3K50 A;  5EUW A;  1J7X A;  1T6R A;  4H2F A;  4I5N C;  4ZX2 A;  4B2O A;  4L8K A;  4H2B A;  4LU9 A;  4TUG A;  3V8V A;  2WDE A;  2ZO9 B;  4DMG A;  3DUP A;  4H2G A;  1V73 A;  4I5L C;  3VSE A;  3ZXN A;  3V97 A;  2Z06 A;  3RL4 A;  3FGA C;  1SU1 A;  4GHN A;  1K32 A;  3IB8 A;  1N6E A;  2IE4 C;  4FBW A;  3JYF A;  5HPE A;  3GMF A;  2HY1 A;  1N6D A;  4HIZ A;  1UTE A;  2AS0 A;  2GJU A;  3H60 A;  5J28 A;  3C0K A;  3C5W C;  3RQZ A;  1II7 A;  1H4Z A;  3P71 C;  3MGL A;  1TCO A;  2NYL C;  3QFM A;  4ZVZ A;  2Z1A A;  3AGE A;  1OI8 A;  3HVQ A;  3QFN A;  3DJA A;  1WAR A;  4HD0 A;  2QFR A;  2QJC A;  5C1V A;  1JK7 A;  2AHD A;  3LDF A;  1V0E A;  2BCD A;  2HYO A;  2JOG A;  3AV0 A;  3THN A;  3V4Y A;  4KKZ A;  4TUI A;  1MF8 A;  2KLN A;  4HYL A;  2BDX A;  3TGH A;  5EUS A;  1S8E A;  4O43 A;  3N5U A;  2DXN A;  3D3U A;  4QTP A;  3H69 A;  5JPE A;  1OIE A;  4Q7F A;  2CWW A;  2NYM C;  1FC6 A;  4LAC C;  4AE2 A;  4MOY A;  4L1C A;  1M63 A;  4JA7 A; 
#chains in the Genus database with same CATH homology
 4FBK A;  2IAE C;  4F0Z A;  3MOG A;  5F3W A;  1S70 A;  3RL3 A;  2YEQ A;  1G5B A;  2XMO A;  1FC7 A;  3FLO A;  3H68 A;  4FCX A;  4ORC A;  2R17 A;  4MP0 A;  3QG5 C;  1AUI A;  2HYP A;  3H63 A;  3ICF A;  3IVE A;  2A22 A;  4UT3 B;  2QFP A;  4UT2 A;  2RRL A;  3DSC A;  4MOV A;  3H67 A;  3CK2 A;  4NZV A;  3T1I A;  2P6B A;  2NXF A;  1U32 A;  4YKE A;  3RL5 A;  2ZOA A;  2DFJ A;  5DNY A;  1HP1 A;  4KBP A;  1Z2X A;  4J6O A;  4JC0 A;  3LL8 A;  4O5G A;  3K7W C;  1FC9 A;  3PSO A;  4AEJ A;  4V0X A;  1QHW A;  4FBQ A;  4O4K A;  1W24 A;  3DOR A;  3E7B A;  2NPP C;  1XZW A;  4WWL A;  4UWQ A;  3E0J A;  3DSD A;  4LTY A;  4ORA A;  5IOH A;  4V0V A;  1FCF A;  1USH A;  3ZU0 A;  3QFO A;  2BQ8 X;  1BPL A;  1S3M A;  2DXL A;  3QFK A;  3EGH A;  3IB7 A;  4OR9 A;  1OID A;  1Z2W A;  5GTU A;  1S3L A;  4DT2 A;  2WDC A;  4H1Y P;  3D03 A;  2O8A A;  4UT3 A;  1WAO 1;  3ZTV A;  1IT6 A;  2WDF A;  3KBP A;  1KBP A;  1S3N A;  4M0V A;  4H1S A;  1N6F A;  1UF3 A;  1XM7 A;  3H61 A;  3H66 A;  2KKN A;  1FJM A;  1HO5 A;  2ZBM A;  3EGG A;  4H2I A;  4O24 A;  5B8I A;  3C9F A;  3E7A A;  5JPF A;  1NNW A;  1S95 A;  1T70 A;  1T71 A;  3AUZ A;  4XPN A;  5INB A;  4ORB A;  4V0W A;  2Q8U A;  2YVT A;  4IYP C;  1HPU A;  4DSY A;  3GVE A;  3DW8 C;  2Z72 A;  2IE3 C;  3K7V C;  2CV9 A;  2WDD A;  5EQV A;  3PSN A;  4DHL A;  4G9J A;  1QFC A;  2O8G A;  4IL1 A;  3GHF A;  3H64 A;  3IVD A;  2USH A;  4JA9 A;  3THO B;  3H62 B;  5JJT A;  3K50 A;  1J7X A;  4H2F A;  4I5N C;  4ZX2 A;  4B2O A;  4L8K A;  4H2B A;  4LU9 A;  4TUG A;  2WDE A;  2ZO9 B;  3DUP A;  4H2G A;  1V73 A;  4I5L C;  2Z06 A;  3RL4 A;  3FGA C;  1SU1 A;  4GHN A;  1K32 A;  3IB8 A;  1N6E A;  2IE4 C;  4FBW A;  3JYF A;  5HPE A;  3GMF A;  2HY1 A;  1N6D A;  1UTE A;  2GJU A;  3H60 A;  5J28 A;  3C5W C;  3RQZ A;  1II7 A;  3P71 C;  2NYL C;  1TCO A;  3QFM A;  4ZVZ A;  2Z1A A;  3HVQ A;  1OI8 A;  3QFN A;  4HD0 A;  3DJA A;  1WAR A;  2QFR A;  2QJC A;  5C1V A;  1JK7 A;  2AHD A;  2BCD A;  2JOG A;  2HYO A;  3AV0 A;  3V4Y A;  3THN A;  4KKZ A;  4TUI A;  1MF8 A;  3TGH A;  2BDX A;  1S8E A;  4O43 A;  3N5U A;  2DXN A;  3H69 A;  5JPE A;  1OIE A;  4Q7F A;  2NYM C;  4LAC C;  1FC6 A;  4AE2 A;  4MOY A;  4L1C A;  1M63 A;  4JA7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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