2ZOAA

Malonate-bound structure of the glycerophosphodiesterase from enterobacter aerogenes (gpdq) collected at 1.280 angstrom
Total Genus 77
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
77
sequence length
271
structure length
271
Chain Sequence
MLLAHISDTHFRSRGEKLYGFIDVNAANADVVSQLNALRERPDAVVVSGDIVNCGRPEEYQVARQILGSLNYPLYLIPGNHDDKALFLEYLQPLCPQLGSDANNMRCAVDDFATRLLFIDSSRAGTSKGWLTDETISWLEAQLFEGGDKPATIFMHHPPLPLGNAQMDPIACENGHRLLALVERFPSLTRIFCGHNHSLTMTQYRQALISTLPGTVHQVPYCHADTDPYYDLSPASCLMHRQVGEQWVSYQHSLAHYAGPWLYDENISCPT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Malonate-bound structure of the glycerophosphodiesterase from Enterobacter aerogenes (GpdQ) and characterization of the native Fe2+ metal-ion preference.
pubmed doi rcsb
source organism Enterobacter aerogenes
molecule tags Hydrolase
molecule keywords Phosphohydrolase
total genus 77
structure length 271
sequence length 271
chains with identical sequence B
ec nomenclature ec 3.1.4.46: Glycerophosphodiester phosphodiesterase.
pdb deposition date 2008-05-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00149 Metallophos Calcineurin-like phosphoesterase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.750.180 Alpha Beta 2-Layer Sandwich Transcription Regulator spoIIAA Transcription Regulator spoIIAA 2zoaA02
3.60.21.40 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 2zoaA01
2ZO9B 2DXLA 2ZOAA 2DXNA 3D03A
chains in the Genus database with same CATH superfamily
3RL3A 5JJTA 3H66A 4HIZA 3GVKA 3VSEA 4L1CA 4JA7A 4UT2A 1N6EA 3ZXNA 3RL5A 5INBA 5JPFA 4Q7FA 4DGFA 5EUWA 3H62B 1V73A 3IVEA 1WXWA 1N6DA 4OR9A 2YEQA 2Z06A 3LDFA 4AE2A 1XZWA 3GVEA 1J7XA 2GJUA 2NPPC 4H2IA 4ZVZA 3LLOA 5J28A 3LL8A 2IE3C 4TUGA 1V0EA 1S70A 3KBPA 3DW8C 1N6FA 4DT2A 5HPEA 1U32A 1W24A 4O5GA 3RL4A 3CK2A 3IH8A 3ZTBA 2DXNA 4FBQA 3C9FA 1H4XA 3IHBA 1JK7A 3AV0A 3ZTVA 2ZOAA 2WDDA 5F3WA 1S3MA 4DSYA 1FC9A 4GHNA 1HPUA 2YVTA 1USHA 2Q8UA 1OI8A 4LU9A 1TCOA 3JYFA 2CWWA 1SU1A 3K7VC 4ORCA 1FCFA 2BDXA 4H1SA 3E0JA 2A22A 4O43A 3GK7A 4QTPA 4HD0A 1H4ZA 4ZX2A 4H1YP 4V0VA 3EH7A 4O4KA 4MP0A 5C1VA 2P6BA 4FCXA 4MOVA 3E7BA 1KBPA 5EUXA 3DJAA 3C0KA 1II7A 3H68A 3D03A 3IB7A 2DFJA 4UT3B 3RQZA 3AGDA 1G5BA 1WAO1 2O8GA 1M63A 2KLNA 2QFRA 3QFMA 1Z2XA 4I5NC 1S8EA 1HP1A 3IHAA 2ZBMA 3P71C 2JOGA 3MGLA 3ICFA 4NZVA 4L8KA 3DUPA 1XM7A 2RRLA 3GVJA 2WDEA 3IH9A 1THNB 4LACC 3OIZA 1WXXA 1UTEA 4LTYA 4V0WA 4F0ZA 2OASA 1H4YA 2O8AA 1HO5A 2QFPA 3IF5A 3QFKA 4H2BA 2VY9A 3FLOA 3QFNA 5EZBA 1MF8A 4J6OA 4YKEA 3D3UA 2IAEC 4M0VA 1NNWA 3TGHA 3THOB 1TH8B 4XS5A 4DGHA 2NYLC 3QDQA 2R17A 3IVDA 4JC0A 3QFOA 4KKZA 5B8IA 1IT6A 3H69A 3H67A 1QFCA 3MOGA 1WARA 3K50A 3EGGA 3NY7A 1S3NA 1SBOA 3C5WC 4DHLA 1OIEA 3H64A 3QG5C 3AUZA 3H61A 4H2GA 4IL1A 4MOYA 3H63A 3PSNA 5GTUA 1TIDB 5IOHA 3EGHA 1QHWA 4FBWA 3V8VA 3HVQA 5EUUA 1Z2WA 1BPLA 1T71A 1T6RA 1BUZA 5EUSA 4ORBA 3V4YA 2HYOA 4O24A 2HYPA 2USHA 3THNA 3AGEA 1AUZA 1FC6A 2AHDA 2Z1AA 2Z72A 4XPNA 1FC7A 4IYPC 2QJCA 4B2OA 3E7AA 3V97A 1S3LA 3IB8A 1S95A 2WDCA 4I5LC 3GMFA 3K7WC 4ORAA 4G9JA 4UT3A 1HF2A 5JPEA 2KA5A 5EQVA 2CV9A 2ZO9B 1VC1A 4AEJA 3H60A 4WWLA 2DXLA 4TUIA 3GVLA 3T6OA 2NXFA 3DORA 2XMOA 2B78A 1V0FA 3ZU0A 2AS0A 1OIDA 3PSOA 1K32A 4UWQA 4DMGA 3T1IA 1TILB 3DSDA 3FGAC 3LKLA 3GHFA 2NYMC 5EUZA 3JU4A 4JA9A 4HYLA 1FJMA 4H2FA 4FBKA 2WDFA 4KBPA 4V0XA 1T70A 2IE4C 3OIRA 1AUIA 2BQ8X 3DSCA 3F43A 5DNYA 2BCDA 1UF3A 2HY1A 2KKNA 3N5UA
chains in the Genus database with same CATH topology
3RL3A 5JJTA 3H66A 4JA7A 4L1CA 4UT2A 1N6EA 3RL5A 5INBA 5JPFA 4Q7FA 3H62B 3IVEA 1V73A 1N6DA 4OR9A 2YEQA 2Z06A 3GVEA 4AE2A 1XZWA 4H2IA 1J7XA 2GJUA 2NPPC 5J28A 4ZVZA 3LL8A 2IE3C 4TUGA 1S70A 3KBPA 3DW8C 1N6FA 4DT2A 5HPEA 1U32A 1W24A 4O5GA 3RL4A 3CK2A 4FBQA 2DXNA 3C9FA 1JK7A 3AV0A 3ZTVA 2ZOAA 2WDDA 5F3WA 1S3MA 4DSYA 1FC9A 4GHNA 1HPUA 2YVTA 1USHA 2Q8UA 1OI8A 4LU9A 1TCOA 3JYFA 1SU1A 3K7VC 4ORCA 1FCFA 2BDXA 4H1SA 3E0JA 2A22A 4O43A 4HD0A 4ZX2A 4H1YP 4V0VA 4O4KA 4MP0A 5C1VA 2P6BA 4FCXA 4MOVA 3E7BA 1KBPA 3DJAA 3IB7A 1II7A 3H68A 3D03A 2DFJA 4UT3B 3RQZA 1G5BA 2O8GA 1WAO1 2QFRA 1M63A 3QFMA 1Z2XA 4I5NC 1S8EA 1HP1A 2ZBMA 3P71C 2JOGA 3ICFA 4NZVA 4L8KA 3DUPA 1XM7A 2RRLA 2WDEA 4LACC 1UTEA 4LTYA 4V0WA 4F0ZA 2O8AA 1HO5A 2QFPA 3QFKA 4H2BA 3QFNA 3FLOA 4J6OA 4YKEA 1MF8A 4M0VA 2IAEC 3TGHA 1NNWA 3THOB 2R17A 2NYLC 3IVDA 3QFOA 4KKZA 4JC0A 5B8IA 1IT6A 3H69A 3H67A 1QFCA 3MOGA 1WARA 3K50A 3EGGA 1S3NA 3C5WC 4DHLA 1OIEA 3H64A 3QG5C 3AUZA 3H61A 4H2GA 4IL1A 4MOYA 3H63A 3PSNA 5GTUA 5IOHA 3EGHA 1QHWA 4FBWA 3HVQA 1Z2WA 1BPLA 1T71A 4ORBA 3V4YA 2HYOA 4O24A 2HYPA 2USHA 3THNA 1FC6A 2AHDA 2Z1AA 2Z72A 4XPNA 1FC7A 4IYPC 2QJCA 4B2OA 3E7AA 1S3LA 3IB8A 1S95A 2WDCA 4I5LC 3GMFA 3K7WC 4ORAA 4G9JA 4UT3A 5JPEA 5EQVA 2CV9A 2ZO9B 4AEJA 3H60A 4TUIA 4WWLA 2DXLA 3ZU0A 2NXFA 3DORA 2XMOA 1OIDA 3PSOA 1K32A 4UWQA 3T1IA 3DSDA 3FGAC 3GHFA 2NYMC 4JA9A 4H2FA 1FJMA 4FBKA 2WDFA 4KBPA 4V0XA 1T70A 2IE4C 1AUIA 2BQ8X 3DSCA 5DNYA 2BCDA 1UF3A 2HY1A 2KKNA 3N5UA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2ZO9 B;  2DXL A;  2ZOA A;  2DXN A;  3D03 A; 
#chains in the Genus database with same CATH topology
 3RL3 A;  5JJT A;  3H66 A;  4HIZ A;  3GVK A;  3VSE A;  4L1C A;  4JA7 A;  4UT2 A;  1N6E A;  3ZXN A;  3RL5 A;  5INB A;  5JPF A;  4Q7F A;  4DGF A;  5EUW A;  3H62 B;  1V73 A;  3IVE A;  1WXW A;  1N6D A;  4OR9 A;  2YEQ A;  2Z06 A;  3LDF A;  4AE2 A;  1XZW A;  3GVE A;  1J7X A;  2GJU A;  2NPP C;  4H2I A;  4ZVZ A;  3LLO A;  5J28 A;  3LL8 A;  2IE3 C;  4TUG A;  1V0E A;  1S70 A;  3KBP A;  3DW8 C;  1N6F A;  4DT2 A;  5HPE A;  1U32 A;  1W24 A;  4O5G A;  3RL4 A;  3CK2 A;  3IH8 A;  3ZTB A;  2DXN A;  4FBQ A;  3C9F A;  1H4X A;  3IHB A;  1JK7 A;  3AV0 A;  3ZTV A;  2ZOA A;  2WDD A;  5F3W A;  1S3M A;  4DSY A;  1FC9 A;  4GHN A;  1HPU A;  2YVT A;  1USH A;  2Q8U A;  1OI8 A;  4LU9 A;  1TCO A;  3JYF A;  2CWW A;  1SU1 A;  3K7V C;  4ORC A;  1FCF A;  2BDX A;  4H1S A;  3E0J A;  2A22 A;  4O43 A;  3GK7 A;  4QTP A;  4HD0 A;  1H4Z A;  4ZX2 A;  4H1Y P;  4V0V A;  3EH7 A;  4O4K A;  4MP0 A;  5C1V A;  2P6B A;  4FCX A;  4MOV A;  3E7B A;  1KBP A;  5EUX A;  3DJA A;  3C0K A;  1II7 A;  3H68 A;  3D03 A;  3IB7 A;  2DFJ A;  4UT3 B;  3RQZ A;  3AGD A;  1G5B A;  1WAO 1;  2O8G A;  1M63 A;  2KLN A;  2QFR A;  3QFM A;  1Z2X A;  4I5N C;  1S8E A;  1HP1 A;  3IHA A;  2ZBM A;  3P71 C;  2JOG A;  3MGL A;  3ICF A;  4NZV A;  4L8K A;  3DUP A;  1XM7 A;  2RRL A;  3GVJ A;  2WDE A;  3IH9 A;  1THN B;  4LAC C;  3OIZ A;  1WXX A;  1UTE A;  4LTY A;  4V0W A;  4F0Z A;  2OAS A;  1H4Y A;  2O8A A;  1HO5 A;  2QFP A;  3IF5 A;  3QFK A;  4H2B A;  2VY9 A;  3FLO A;  3QFN A;  5EZB A;  1MF8 A;  4J6O A;  4YKE A;  3D3U A;  2IAE C;  4M0V A;  1NNW A;  3TGH A;  3THO B;  1TH8 B;  4XS5 A;  4DGH A;  2NYL C;  3QDQ A;  2R17 A;  3IVD A;  4JC0 A;  3QFO A;  4KKZ A;  5B8I A;  1IT6 A;  3H69 A;  3H67 A;  1QFC A;  3MOG A;  1WAR A;  3K50 A;  3EGG A;  3NY7 A;  1S3N A;  1SBO A;  3C5W C;  4DHL A;  1OIE A;  3H64 A;  3QG5 C;  3AUZ A;  3H61 A;  4H2G A;  4IL1 A;  4MOY A;  3H63 A;  3PSN A;  5GTU A;  1TID B;  5IOH A;  3EGH A;  1QHW A;  4FBW A;  3V8V A;  3HVQ A;  5EUU A;  1Z2W A;  1BPL A;  1T71 A;  1T6R A;  1BUZ A;  5EUS A;  4ORB A;  3V4Y A;  2HYO A;  4O24 A;  2HYP A;  2USH A;  3THN A;  3AGE A;  1AUZ A;  1FC6 A;  2AHD A;  2Z1A A;  2Z72 A;  4XPN A;  1FC7 A;  4IYP C;  2QJC A;  4B2O A;  3E7A A;  3V97 A;  1S3L A;  3IB8 A;  1S95 A;  2WDC A;  4I5L C;  3GMF A;  3K7W C;  4ORA A;  4G9J A;  4UT3 A;  1HF2 A;  5JPE A;  2KA5 A;  5EQV A;  2CV9 A;  2ZO9 B;  1VC1 A;  4AEJ A;  3H60 A;  4WWL A;  2DXL A;  4TUI A;  3GVL A;  3T6O A;  2NXF A;  3DOR A;  2XMO A;  2B78 A;  1V0F A;  3ZU0 A;  2AS0 A;  1OID A;  3PSO A;  1K32 A;  4UWQ A;  4DMG A;  3T1I A;  1TIL B;  3DSD A;  3FGA C;  3LKL A;  3GHF A;  2NYM C;  5EUZ A;  3JU4 A;  4JA9 A;  4HYL A;  1FJM A;  4H2F A;  4FBK A;  2WDF A;  4KBP A;  4V0X A;  1T70 A;  2IE4 C;  3OIR A;  1AUI A;  2BQ8 X;  3DSC A;  3F43 A;  5DNY A;  2BCD A;  1UF3 A;  2HY1 A;  2KKN A;  3N5U A; 
#chains in the Genus database with same CATH homology
 3RL3 A;  5JJT A;  3H66 A;  4JA7 A;  4L1C A;  4UT2 A;  1N6E A;  3RL5 A;  5INB A;  5JPF A;  4Q7F A;  3H62 B;  3IVE A;  1V73 A;  1N6D A;  4OR9 A;  2YEQ A;  2Z06 A;  3GVE A;  4AE2 A;  1XZW A;  4H2I A;  1J7X A;  2GJU A;  2NPP C;  5J28 A;  4ZVZ A;  3LL8 A;  2IE3 C;  4TUG A;  1S70 A;  3KBP A;  3DW8 C;  1N6F A;  4DT2 A;  5HPE A;  1U32 A;  1W24 A;  4O5G A;  3RL4 A;  3CK2 A;  4FBQ A;  2DXN A;  3C9F A;  1JK7 A;  3AV0 A;  3ZTV A;  2ZOA A;  2WDD A;  5F3W A;  1S3M A;  4DSY A;  1FC9 A;  4GHN A;  1HPU A;  2YVT A;  1USH A;  2Q8U A;  1OI8 A;  4LU9 A;  1TCO A;  3JYF A;  1SU1 A;  3K7V C;  4ORC A;  1FCF A;  2BDX A;  4H1S A;  3E0J A;  2A22 A;  4O43 A;  4HD0 A;  4ZX2 A;  4H1Y P;  4V0V A;  4O4K A;  4MP0 A;  5C1V A;  2P6B A;  4FCX A;  4MOV A;  3E7B A;  1KBP A;  3DJA A;  3IB7 A;  1II7 A;  3H68 A;  3D03 A;  2DFJ A;  4UT3 B;  3RQZ A;  1G5B A;  2O8G A;  1WAO 1;  2QFR A;  1M63 A;  3QFM A;  1Z2X A;  4I5N C;  1S8E A;  1HP1 A;  2ZBM A;  3P71 C;  2JOG A;  3ICF A;  4NZV A;  4L8K A;  3DUP A;  1XM7 A;  2RRL A;  2WDE A;  4LAC C;  1UTE A;  4LTY A;  4V0W A;  4F0Z A;  2O8A A;  1HO5 A;  2QFP A;  3QFK A;  4H2B A;  3QFN A;  3FLO A;  4J6O A;  4YKE A;  1MF8 A;  4M0V A;  2IAE C;  3TGH A;  1NNW A;  3THO B;  2R17 A;  2NYL C;  3IVD A;  3QFO A;  4KKZ A;  4JC0 A;  5B8I A;  1IT6 A;  3H69 A;  3H67 A;  1QFC A;  3MOG A;  1WAR A;  3K50 A;  3EGG A;  1S3N A;  3C5W C;  4DHL A;  1OIE A;  3H64 A;  3QG5 C;  3AUZ A;  3H61 A;  4H2G A;  4IL1 A;  4MOY A;  3H63 A;  3PSN A;  5GTU A;  5IOH A;  3EGH A;  1QHW A;  4FBW A;  3HVQ A;  1Z2W A;  1BPL A;  1T71 A;  4ORB A;  3V4Y A;  2HYO A;  4O24 A;  2HYP A;  2USH A;  3THN A;  1FC6 A;  2AHD A;  2Z1A A;  2Z72 A;  4XPN A;  1FC7 A;  4IYP C;  2QJC A;  4B2O A;  3E7A A;  1S3L A;  3IB8 A;  1S95 A;  2WDC A;  4I5L C;  3GMF A;  3K7W C;  4ORA A;  4G9J A;  4UT3 A;  5JPE A;  5EQV A;  2CV9 A;  2ZO9 B;  4AEJ A;  3H60 A;  4TUI A;  4WWL A;  2DXL A;  3ZU0 A;  2NXF A;  3DOR A;  2XMO A;  1OID A;  3PSO A;  1K32 A;  4UWQ A;  3T1I A;  3DSD A;  3FGA C;  3GHF A;  2NYM C;  4JA9 A;  4H2F A;  1FJM A;  4FBK A;  2WDF A;  4KBP A;  4V0X A;  1T70 A;  2IE4 C;  1AUI A;  2BQ8 X;  3DSC A;  5DNY A;  2BCD A;  1UF3 A;  2HY1 A;  2KKN A;  3N5U A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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