2ZOAA

Malonate-bound structure of the glycerophosphodiesterase from enterobacter aerogenes (gpdq) collected at 1.280 angstrom
Total Genus 77
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
77
sequence length
271
structure length
271
Chain Sequence
MLLAHISDTHFRSRGEKLYGFIDVNAANADVVSQLNALRERPDAVVVSGDIVNCGRPEEYQVARQILGSLNYPLYLIPGNHDDKALFLEYLQPLCPQLGSDANNMRCAVDDFATRLLFIDSSRAGTSKGWLTDETISWLEAQLFEGGDKPATIFMHHPPLPLGNAQMDPIACENGHRLLALVERFPSLTRIFCGHNHSLTMTQYRQALISTLPGTVHQVPYCHADTDPYYDLSPASCLMHRQVGEQWVSYQHSLAHYAGPWLYDENISCPT
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Phosphohydrolase
publication title Malonate-bound structure of the glycerophosphodiesterase from Enterobacter aerogenes (GpdQ) and characterization of the native Fe2+ metal-ion preference.
pubmed doi rcsb
source organism Enterobacter aerogenes
molecule tags Hydrolase
total genus 77
structure length 271
sequence length 271
chains with identical sequence B
ec nomenclature ec 3.1.4.46: Glycerophosphodiester phosphodiesterase.
pdb deposition date 2008-05-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00149 Metallophos Calcineurin-like phosphoesterase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.750.180 Alpha Beta 2-Layer Sandwich Transcription Regulator spoIIAA Transcription Regulator spoIIAA 2zoaA02
3.60.21.40 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 2zoaA01
3D03A 2ZO9B 2ZOAA 2DXNA 2DXLA
chains in the Genus database with same CATH superfamily
3E7BA 2OASA 1WXXA 1IT6A 3ZXNA 5EQVA 1G5BA 3ICFA 2YVTA 2GJUA 1UF3A 3JU4A 1SU1A 2XMOA 4HD0A 3LLOA 3THNA 1N6EA 4TUIA 4V0VA 1V0FA 2HY1A 1XZWA 2IE3C 3IH9A 2QFRA 3IB8A 4AEJA 3QG5C 4IL1A 3ZTBA 3C0KA 4J6OA 4Q7FA 5HPEA 3FGAC 1S3NA 5INBA 1MF8A 1FC9A 4ZVZA 2B78A 3GVLA 2WDCA 1V73A 4QTPA 2ZOAA 4AE2A 5DNYA 5EZBA 4LTYA 2BDXA 4M0VA 2HYPA 4JA7A 3PSNA 4MOVA 1II7A 4UT3A 1N6FA 2USHA 3H69A 4FCXA 3KBPA 3OIZA 4I5LC 4G9JA 4F0ZA 4ORCA 2IAEC 4KBPA 3D03A 3DUPA 2A22A 2NYMC 3H66A 3H67A 3H62B 4H2FA 4MP0A 3D3UA 4JC0A 1H4ZA 1HPUA 2KKNA 4UT3B 2O8GA 4UT2A 5EUUA 4DSYA 2BQ8X 4IYPC 3OIRA 2P6BA 1U32A 1H4YA 3RL5A 1W24A 2HYOA 3EGGA 3MOGA 4MOYA 5C1VA 5EUSA 3H60A 3GVEA 1T71A 3MGLA 4FBKA 1K32A 3GVKA 3IH8A 4H2IA 3TGHA 5IOHA 4XS5A 2Z72A 3ZTVA 3H64A 5EUWA 1OIDA 3H61A 3V8VA 4FBQA 3DJAA 4O24A 1S70A 4GHNA 1TH8B 1WAO1 3QDQA 2DXLA 1S3LA 3E0JA 3RQZA 4DMGA 1NNWA 3DSCA 4O4KA 1JK7A 4JA9A 1WXWA 3P71C 4LU9A 5EUZA 1BUZA 2IE4C 2NXFA 3K50A 1HF2A 1S3MA 3GHFA 1KBPA 1OIEA 2DFJA 1H4XA 3V97A 3AV0A 2BCDA 3T6OA 3JYFA 3AUZA 1OI8A 1UTEA 3THOB 1Z2XA 4XPNA 5B8IA 2ZO9B 1TIDB 3C9FA 4LACC 3FLOA 1BPLA 1T70A 2DXNA 3QFOA 3RL4A 2RRLA 3DORA 3LDFA 4FBWA 4H2GA 4YKEA 4O43A 2QJCA 3LL8A 2NPPC 2VY9A 4V0WA 3QFNA 2KLNA 4HYLA 3EGHA 1T6RA 3IVDA 1WARA 3GK7A 1USHA 3C5WC 3PSOA 4ORAA 4H2BA 1HO5A 2WDDA 1THNB 4KKZA 1Z2WA 1M63A 2AS0A 2WDFA 4V0XA 1FJMA 4L1CA 5EUXA 2QFPA 1N6DA 2Z06A 3K7VC 4H1YP 4O5GA 5F3WA 1QFCA 4UWQA 1SBOA 3EH7A 2AHDA 2Q8UA 3E7AA 3IB7A 1J7XA 4WWLA 2Z1AA 3IVEA 1TILB 2O8AA 3IF5A 3GMFA 3ZU0A 4B2OA 5GTUA 1V0EA 3H68A 3N5UA 4OR9A 5JPFA 2KA5A 3AGDA 3IHBA 4DGHA 4H1SA 1AUIA 1HP1A 3H63A 3QFMA 3QFKA 2YEQA 4DGFA 3F43A 2NYLC 2WDEA 3RL3A 1FC7A 3T1IA 4ZX2A 4HIZA 3DSDA 3HVQA 2CWWA 1AUZA 1VC1A 3LKLA 3NY7A 2JOGA 4ORBA 5JJTA 1S8EA 3CK2A 1QHWA 2R17A 3V4YA 5JPEA 4I5NC 4TUGA 3AGEA 1S95A 1XM7A 3K7WC 1FCFA 1FC6A 5J28A 1TCOA 2CV9A 3IHAA 3VSEA 4DHLA 4DT2A 2ZBMA 3GVJA 4NZVA 3DW8C 4L8KA
chains in the Genus database with same CATH topology
3E7BA 1IT6A 5EQVA 1G5BA 3ICFA 2YVTA 2GJUA 1UF3A 2XMOA 1SU1A 4HD0A 4TUIA 3THNA 1N6EA 4V0VA 2HY1A 1XZWA 2IE3C 3IB8A 2QFRA 4J6OA 4AEJA 3QG5C 4IL1A 4Q7FA 5INBA 5HPEA 3FGAC 1S3NA 1MF8A 4ZVZA 2WDCA 1V73A 2ZOAA 4AE2A 5DNYA 4LTYA 2BDXA 4M0VA 2HYPA 4JA7A 3PSNA 4MOVA 1II7A 4UT3A 1N6FA 2USHA 4FCXA 3KBPA 4I5LC 4G9JA 4F0ZA 4ORCA 2IAEC 4KBPA 3D03A 3DUPA 2A22A 2NYMC 3H66A 3H67A 3H62B 4H2FA 4MP0A 4JC0A 4UT3B 1HPUA 2KKNA 2O8GA 4DSYA 2BQ8X 4IYPC 3RL5A 2P6BA 1U32A 1W24A 2HYOA 3EGGA 3MOGA 4MOYA 5C1VA 3H60A 3GVEA 1T71A 4FBKA 1K32A 4H2IA 3TGHA 5IOHA 2Z72A 3ZTVA 3H64A 1OIDA 3H61A 4FBQA 3DJAA 4O24A 1S70A 4GHNA 1WAO1 2DXLA 1S3LA 3E0JA 3RQZA 1NNWA 3DSCA 4O4KA 1JK7A 4JA9A 3P71C 4LU9A 2IE4C 2NXFA 3K50A 1S3MA 3H69A 3GHFA 1KBPA 1OIEA 2DFJA 3AV0A 3JYFA 4UT2A 2BCDA 3AUZA 1OI8A 1UTEA 3THOB 1Z2XA 4XPNA 5B8IA 2ZO9B 3C9FA 4LACC 3FLOA 1BPLA 1T70A 2DXNA 3QFOA 3RL4A 2RRLA 3DORA 4FBWA 4H2GA 4YKEA 4O43A 2QJCA 3LL8A 2NPPC 4V0WA 3QFNA 3EGHA 3IVDA 1WARA 1USHA 3C5WC 3PSOA 4ORAA 4H2BA 1HO5A 2WDDA 4KKZA 1Z2WA 1M63A 2WDFA 4V0XA 1FJMA 4L1CA 2Z06A 2QFPA 1N6DA 3K7VC 4H1YP 4O5GA 5F3WA 1QFCA 4UWQA 2AHDA 2Q8UA 3IB7A 3E7AA 1J7XA 4WWLA 2Z1AA 3IVEA 2O8AA 3GMFA 3ZU0A 4B2OA 5GTUA 3H68A 3N5UA 4OR9A 5JPFA 4H1SA 1AUIA 1HP1A 3H63A 3QFMA 3QFKA 2YEQA 2NYLC 2WDEA 4ZX2A 3DSDA 3RL3A 1FC7A 3T1IA 3HVQA 5JJTA 2JOGA 4ORBA 1S8EA 3CK2A 1QHWA 2R17A 3V4YA 5JPEA 4I5NC 4TUGA 1S95A 1XM7A 3K7WC 1FCFA 1FC6A 5J28A 1TCOA 2CV9A 4DHLA 4DT2A 2ZBMA 1FC9A 4NZVA 3DW8C 4L8KA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3D03 A;  2ZO9 B;  2ZOA A;  2DXN A;  2DXL A; 
#chains in the Genus database with same CATH topology
 3E7B A;  2OAS A;  1WXX A;  1IT6 A;  3ZXN A;  5EQV A;  1G5B A;  3ICF A;  2YVT A;  2GJU A;  1UF3 A;  3JU4 A;  1SU1 A;  2XMO A;  4HD0 A;  3LLO A;  3THN A;  1N6E A;  4TUI A;  4V0V A;  1V0F A;  2HY1 A;  1XZW A;  2IE3 C;  3IH9 A;  2QFR A;  3IB8 A;  4AEJ A;  3QG5 C;  4IL1 A;  3ZTB A;  3C0K A;  4J6O A;  4Q7F A;  5HPE A;  3FGA C;  1S3N A;  5INB A;  1MF8 A;  1FC9 A;  4ZVZ A;  2B78 A;  3GVL A;  2WDC A;  1V73 A;  4QTP A;  2ZOA A;  4AE2 A;  5DNY A;  5EZB A;  4LTY A;  2BDX A;  4M0V A;  2HYP A;  4JA7 A;  3PSN A;  4MOV A;  1II7 A;  4UT3 A;  1N6F A;  2USH A;  3H69 A;  4FCX A;  3KBP A;  3OIZ A;  4I5L C;  4G9J A;  4F0Z A;  4ORC A;  2IAE C;  4KBP A;  3D03 A;  3DUP A;  2A22 A;  2NYM C;  3H66 A;  3H67 A;  3H62 B;  4H2F A;  4MP0 A;  3D3U A;  4JC0 A;  1H4Z A;  1HPU A;  2KKN A;  4UT3 B;  2O8G A;  4UT2 A;  5EUU A;  4DSY A;  2BQ8 X;  4IYP C;  3OIR A;  2P6B A;  1U32 A;  1H4Y A;  3RL5 A;  1W24 A;  2HYO A;  3EGG A;  3MOG A;  4MOY A;  5C1V A;  5EUS A;  3H60 A;  3GVE A;  1T71 A;  3MGL A;  4FBK A;  1K32 A;  3GVK A;  3IH8 A;  4H2I A;  3TGH A;  5IOH A;  4XS5 A;  2Z72 A;  3ZTV A;  3H64 A;  5EUW A;  1OID A;  3H61 A;  3V8V A;  4FBQ A;  3DJA A;  4O24 A;  1S70 A;  4GHN A;  1TH8 B;  1WAO 1;  3QDQ A;  2DXL A;  1S3L A;  3E0J A;  3RQZ A;  4DMG A;  1NNW A;  3DSC A;  4O4K A;  1JK7 A;  4JA9 A;  1WXW A;  3P71 C;  4LU9 A;  5EUZ A;  1BUZ A;  2IE4 C;  2NXF A;  3K50 A;  1HF2 A;  1S3M A;  3GHF A;  1KBP A;  1OIE A;  2DFJ A;  1H4X A;  3V97 A;  3AV0 A;  2BCD A;  3T6O A;  3JYF A;  3AUZ A;  1OI8 A;  1UTE A;  3THO B;  1Z2X A;  4XPN A;  5B8I A;  2ZO9 B;  1TID B;  3C9F A;  4LAC C;  3FLO A;  1BPL A;  1T70 A;  2DXN A;  3QFO A;  3RL4 A;  2RRL A;  3DOR A;  3LDF A;  4FBW A;  4H2G A;  4YKE A;  4O43 A;  2QJC A;  3LL8 A;  2NPP C;  2VY9 A;  4V0W A;  3QFN A;  2KLN A;  4HYL A;  3EGH A;  1T6R A;  3IVD A;  1WAR A;  3GK7 A;  1USH A;  3C5W C;  3PSO A;  4ORA A;  4H2B A;  1HO5 A;  2WDD A;  1THN B;  4KKZ A;  1Z2W A;  1M63 A;  2AS0 A;  2WDF A;  4V0X A;  1FJM A;  4L1C A;  5EUX A;  2QFP A;  1N6D A;  2Z06 A;  3K7V C;  4H1Y P;  4O5G A;  5F3W A;  1QFC A;  4UWQ A;  1SBO A;  3EH7 A;  2AHD A;  2Q8U A;  3E7A A;  3IB7 A;  1J7X A;  4WWL A;  2Z1A A;  3IVE A;  1TIL B;  2O8A A;  3IF5 A;  3GMF A;  3ZU0 A;  4B2O A;  5GTU A;  1V0E A;  3H68 A;  3N5U A;  4OR9 A;  5JPF A;  2KA5 A;  3AGD A;  3IHB A;  4DGH A;  4H1S A;  1AUI A;  1HP1 A;  3H63 A;  3QFM A;  3QFK A;  2YEQ A;  4DGF A;  3F43 A;  2NYL C;  2WDE A;  3RL3 A;  1FC7 A;  3T1I A;  4ZX2 A;  4HIZ A;  3DSD A;  3HVQ A;  2CWW A;  1AUZ A;  1VC1 A;  3LKL A;  3NY7 A;  2JOG A;  4ORB A;  5JJT A;  1S8E A;  3CK2 A;  1QHW A;  2R17 A;  3V4Y A;  5JPE A;  4I5N C;  4TUG A;  3AGE A;  1S95 A;  1XM7 A;  3K7W C;  1FCF A;  1FC6 A;  5J28 A;  1TCO A;  2CV9 A;  3IHA A;  3VSE A;  4DHL A;  4DT2 A;  2ZBM A;  3GVJ A;  4NZV A;  3DW8 C;  4L8K A; 
#chains in the Genus database with same CATH homology
 3E7B A;  1IT6 A;  5EQV A;  1G5B A;  3ICF A;  2YVT A;  2GJU A;  1UF3 A;  2XMO A;  1SU1 A;  4HD0 A;  4TUI A;  3THN A;  1N6E A;  4V0V A;  2HY1 A;  1XZW A;  2IE3 C;  3IB8 A;  2QFR A;  4J6O A;  4AEJ A;  3QG5 C;  4IL1 A;  4Q7F A;  5INB A;  5HPE A;  3FGA C;  1S3N A;  1MF8 A;  4ZVZ A;  2WDC A;  1V73 A;  2ZOA A;  4AE2 A;  5DNY A;  4LTY A;  2BDX A;  4M0V A;  2HYP A;  4JA7 A;  3PSN A;  4MOV A;  1II7 A;  4UT3 A;  1N6F A;  2USH A;  4FCX A;  3KBP A;  4I5L C;  4G9J A;  4F0Z A;  4ORC A;  2IAE C;  4KBP A;  3D03 A;  3DUP A;  2A22 A;  2NYM C;  3H66 A;  3H67 A;  3H62 B;  4H2F A;  4MP0 A;  4JC0 A;  4UT3 B;  1HPU A;  2KKN A;  2O8G A;  4DSY A;  2BQ8 X;  4IYP C;  3RL5 A;  2P6B A;  1U32 A;  1W24 A;  2HYO A;  3EGG A;  3MOG A;  4MOY A;  5C1V A;  3H60 A;  3GVE A;  1T71 A;  4FBK A;  1K32 A;  4H2I A;  3TGH A;  5IOH A;  2Z72 A;  3ZTV A;  3H64 A;  1OID A;  3H61 A;  4FBQ A;  3DJA A;  4O24 A;  1S70 A;  4GHN A;  1WAO 1;  2DXL A;  1S3L A;  3E0J A;  3RQZ A;  1NNW A;  3DSC A;  4O4K A;  1JK7 A;  4JA9 A;  3P71 C;  4LU9 A;  2IE4 C;  2NXF A;  3K50 A;  1S3M A;  3H69 A;  3GHF A;  1KBP A;  1OIE A;  2DFJ A;  3AV0 A;  3JYF A;  4UT2 A;  2BCD A;  3AUZ A;  1OI8 A;  1UTE A;  3THO B;  1Z2X A;  4XPN A;  5B8I A;  2ZO9 B;  3C9F A;  4LAC C;  3FLO A;  1BPL A;  1T70 A;  2DXN A;  3QFO A;  3RL4 A;  2RRL A;  3DOR A;  4FBW A;  4H2G A;  4YKE A;  4O43 A;  2QJC A;  3LL8 A;  2NPP C;  4V0W A;  3QFN A;  3EGH A;  3IVD A;  1WAR A;  1USH A;  3C5W C;  3PSO A;  4ORA A;  4H2B A;  1HO5 A;  2WDD A;  4KKZ A;  1Z2W A;  1M63 A;  2WDF A;  4V0X A;  1FJM A;  4L1C A;  2Z06 A;  2QFP A;  1N6D A;  3K7V C;  4H1Y P;  4O5G A;  5F3W A;  1QFC A;  4UWQ A;  2AHD A;  2Q8U A;  3IB7 A;  3E7A A;  1J7X A;  4WWL A;  2Z1A A;  3IVE A;  2O8A A;  3GMF A;  3ZU0 A;  4B2O A;  5GTU A;  3H68 A;  3N5U A;  4OR9 A;  5JPF A;  4H1S A;  1AUI A;  1HP1 A;  3H63 A;  3QFM A;  3QFK A;  2YEQ A;  2NYL C;  2WDE A;  4ZX2 A;  3DSD A;  3RL3 A;  1FC7 A;  3T1I A;  3HVQ A;  5JJT A;  2JOG A;  4ORB A;  1S8E A;  3CK2 A;  1QHW A;  2R17 A;  3V4Y A;  5JPE A;  4I5N C;  4TUG A;  1S95 A;  1XM7 A;  3K7W C;  1FCF A;  1FC6 A;  5J28 A;  1TCO A;  2CV9 A;  4DHL A;  4DT2 A;  2ZBM A;  1FC9 A;  4NZV A;  3DW8 C;  4L8K A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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