2ZOAA

Malonate-bound structure of the glycerophosphodiesterase from enterobacter aerogenes (gpdq) collected at 1.280 angstrom
Total Genus 77
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
77
sequence length
271
structure length
271
Chain Sequence
MLLAHISDTHFRSRGEKLYGFIDVNAANADVVSQLNALRERPDAVVVSGDIVNCGRPEEYQVARQILGSLNYPLYLIPGNHDDKALFLEYLQPLCPQLGSDANNMRCAVDDFATRLLFIDSSRAGTSKGWLTDETISWLEAQLFEGGDKPATIFMHHPPLPLGNAQMDPIACENGHRLLALVERFPSLTRIFCGHNHSLTMTQYRQALISTLPGTVHQVPYCHADTDPYYDLSPASCLMHRQVGEQWVSYQHSLAHYAGPWLYDENISCPT
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Malonate-bound structure of the glycerophosphodiesterase from Enterobacter aerogenes (GpdQ) and characterization of the native Fe2+ metal-ion preference.
pubmed doi rcsb
source organism Enterobacter aerogenes
molecule tags Hydrolase
molecule keywords Phosphohydrolase
total genus 77
structure length 271
sequence length 271
chains with identical sequence B
ec nomenclature ec 3.1.4.46: Glycerophosphodiester phosphodiesterase.
pdb deposition date 2008-05-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00149 Metallophos Calcineurin-like phosphoesterase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.750.180 Alpha Beta 2-Layer Sandwich Transcription Regulator spoIIAA Transcription Regulator spoIIAA 2zoaA02
3.60.21.40 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 2zoaA01
2ZO9B 2ZOAA 3D03A 2DXLA 2DXNA
chains in the Genus database with same CATH superfamily
1T71A 5IOHA 4GHNA 4UT2A 2BCDA 3C5WC 4NZVA 5JJTA 2O8GA 5HPEA 2KLNA 3IH9A 2NYMC 3EH7A 3RQZA 4JA7A 1TILB 3IH8A 1V0FA 3ZTBA 5EUUA 1NNWA 3E7AA 1OI8A 3E7BA 1HPUA 2P6BA 3DUPA 2KA5A 1IT6A 1M63A 1OIDA 3K7VC 5EUZA 4YKEA 4DT2A 1TIDB 3GVJA 2ZOAA 1S70A 2QFPA 1JK7A 2YVTA 3H62B 2DXLA 4TUIA 1WXWA 1UF3A 4G9JA 4IL1A 5EUWA 2A22A 2WDCA 1H4ZA 3OIRA 3LL8A 2NPPC 3EGHA 4F0ZA 4TUGA 3JYFA 5EQVA 4DGFA 4XPNA 1XM7A 1WAO1 4O24A 3LLOA 2HY1A 4HYLA 2R17A 1BUZA 4HIZA 5F3WA 3V4YA 4FCXA 3IB7A 4DMGA 4UWQA 2VY9A 1SU1A 1QFCA 1TCOA 4I5NC 1BPLA 3F43A 2GJUA 1H4YA 1WARA 4MOVA 4J6OA 1V0EA 3IVEA 1USHA 2WDEA 4L8KA 2QJCA 2Z1AA 4O43A 5DNYA 1OIEA 4ZX2A 4L1CA 3H69A 3T1IA 3DSDA 4QTPA 2RRLA 1S8EA 3IHBA 3H64A 3VSEA 2ZBMA 3FLOA 3GK7A 2AS0A 3NY7A 3QDQA 2WDDA 1AUIA 2USHA 3TGHA 5INBA 5JPEA 3IF5A 3P71C 3H66A 5EUXA 3KBPA 4V0XA 3E0JA 1FJMA 3ZXNA 4UT3B 5JPFA 3LDFA 1V73A 4UT3A 1TH8B 1U32A 3N5UA 3QFMA 4Q7FA 3OIZA 4FBWA 2KKNA 4LACC 4MOYA 1THNB 1HF2A 4ZVZA 1SBOA 1FC7A 3IHAA 1VC1A 3DW8C 2B78A 4LU9A 1J7XA 4IYPC 3EGGA 2NYLC 2Z06A 3GVKA 3H68A 3LKLA 4JC0A 3ZTVA 3GMFA 2AHDA 4H2BA 4JA9A 1H4XA 2JOGA 5J28A 4H2GA 1W24A 3V97A 3AV0A 3HVQA 3D3UA 2Q8UA 3IB8A 3V8VA 3K7WC 3QFNA 1N6FA 1FC6A 1WXXA 4FBQA 3GVEA 4H1YP 3AGDA 3ZU0A 4V0VA 2O8AA 3DJAA 2BQ8X 3K50A 3DSCA 2HYPA 1XZWA 3QFKA 2IAEC 5GTUA 3D03A 3PSOA 4H2FA 1G5BA 1HO5A 4H1SA 3AGEA 2OASA 2DFJA 3GHFA 3DORA 3ICFA 2HYOA 3RL4A 4KKZA 3THOB 4FBKA 3QFOA 2DXNA 4XS5A 3PSNA 4DGHA 4MP0A 1KBPA 4OR9A 1FC9A 2WDFA 4B2OA 1II7A 3CK2A 1FCFA 3GVLA 2QFRA 3C9FA 3RL5A 2IE4C 4O4KA 1K32A 4DSYA 3FGAC 2NXFA 1S3LA 4HD0A 4O5GA 5EUSA 3IVDA 5B8IA 3MGLA 1T6RA 1S95A 4ORCA 2CV9A 3H67A 5C1VA 2BDXA 3C0KA 1Z2XA 4ORAA 1MF8A 2XMOA 3JU4A 1S3NA 4H2IA 4M0VA 4DHLA 3QG5C 2CWWA 5EZBA 1N6DA 2Z72A 3T6OA 1AUZA 3H60A 1T70A 4WWLA 1HP1A 3AUZA 4V0WA 4AE2A 3H63A 4LTYA 3RL3A 3H61A 3THNA 2ZO9B 1QHWA 4AEJA 1UTEA 2YEQA 4KBPA 2IE3C 1S3MA 1N6EA 1Z2WA 4I5LC 4ORBA 3MOGA
chains in the Genus database with same CATH topology
1T71A 5IOHA 4GHNA 4UT2A 2BCDA 3C5WC 4NZVA 5JJTA 2O8GA 5HPEA 2NYMC 3RQZA 4JA7A 4DSYA 1NNWA 3E7AA 3E7BA 1OI8A 1HPUA 2P6BA 3DUPA 1M63A 1IT6A 1OIDA 3K7VC 4YKEA 4DT2A 1S70A 3H62B 2ZOAA 2QFPA 1JK7A 2YVTA 2DXLA 4TUIA 4G9JA 1UF3A 4IL1A 2A22A 2WDCA 3LL8A 2NPPC 3EGHA 4F0ZA 3JYFA 5EQVA 4XPNA 1XM7A 1WAO1 4O24A 2HY1A 2R17A 5F3WA 3V4YA 4FCXA 3IB7A 4UWQA 1SU1A 1QFCA 1TCOA 4I5NC 1BPLA 2GJUA 4MOVA 1WARA 4J6OA 3IVEA 1USHA 2WDEA 4L8KA 2QJCA 2Z1AA 4O43A 5DNYA 1OIEA 4ZX2A 4L1CA 3H69A 3T1IA 3DSDA 2RRLA 1S8EA 3H64A 4H2FA 2ZBMA 3FLOA 4TUGA 2WDDA 5JPEA 1AUIA 2USHA 3TGHA 5INBA 3P71C 3H66A 3KBPA 4V0XA 3E0JA 1FJMA 4UT3B 5JPFA 1V73A 4UT3A 1U32A 3N5UA 3QFMA 4Q7FA 4FBWA 2KKNA 4LACC 4MOYA 4ZVZA 1FC7A 3DW8C 4LU9A 1J7XA 4IYPC 3EGGA 2NYLC 2Z06A 3H68A 4JC0A 3ZTVA 3GMFA 2AHDA 4H2BA 4JA9A 2JOGA 5J28A 4H2GA 1W24A 3AV0A 3HVQA 2Q8UA 3IB8A 3QFNA 3K7WC 1N6FA 1FC6A 4FBQA 3GVEA 4H1YP 3ZU0A 4V0VA 2O8AA 3DJAA 2BQ8X 3K50A 3DSCA 2HYPA 1XZWA 3QFKA 2IAEC 5GTUA 3D03A 3PSOA 4H1SA 1G5BA 1HO5A 2DFJA 3GHFA 3DORA 3ICFA 2HYOA 3RL4A 4KKZA 3THOB 4FBKA 3QFOA 2DXNA 3PSNA 4MP0A 4OR9A 1KBPA 4B2OA 1FC9A 2WDFA 1II7A 3CK2A 1FCFA 2QFRA 3C9FA 3RL5A 2IE4C 4O4KA 1K32A 3FGAC 2NXFA 1S3LA 4HD0A 4O5GA 3IVDA 5B8IA 1S95A 4ORCA 5C1VA 2CV9A 3H67A 2BDXA 1Z2XA 4ORAA 1MF8A 2XMOA 1S3NA 4M0VA 4H2IA 4DHLA 3QG5C 2Z72A 1N6DA 3H60A 4WWLA 1T70A 1HP1A 3AUZA 4V0WA 4AE2A 3H63A 4LTYA 3RL3A 3H61A 3THNA 2ZO9B 1QHWA 4AEJA 1UTEA 2YEQA 4KBPA 2IE3C 1S3MA 1N6EA 1Z2WA 4I5LC 4ORBA 3MOGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2ZO9 B;  2ZOA A;  3D03 A;  2DXL A;  2DXN A; 
#chains in the Genus database with same CATH topology
 1T71 A;  5IOH A;  4GHN A;  4UT2 A;  2BCD A;  3C5W C;  4NZV A;  5JJT A;  2O8G A;  5HPE A;  2KLN A;  3IH9 A;  2NYM C;  3EH7 A;  3RQZ A;  4JA7 A;  1TIL B;  3IH8 A;  1V0F A;  3ZTB A;  5EUU A;  1NNW A;  3E7A A;  1OI8 A;  3E7B A;  1HPU A;  2P6B A;  3DUP A;  2KA5 A;  1IT6 A;  1M63 A;  1OID A;  3K7V C;  5EUZ A;  4YKE A;  4DT2 A;  1TID B;  3GVJ A;  2ZOA A;  1S70 A;  2QFP A;  1JK7 A;  2YVT A;  3H62 B;  2DXL A;  4TUI A;  1WXW A;  1UF3 A;  4G9J A;  4IL1 A;  5EUW A;  2A22 A;  2WDC A;  1H4Z A;  3OIR A;  3LL8 A;  2NPP C;  3EGH A;  4F0Z A;  4TUG A;  3JYF A;  5EQV A;  4DGF A;  4XPN A;  1XM7 A;  1WAO 1;  4O24 A;  3LLO A;  2HY1 A;  4HYL A;  2R17 A;  1BUZ A;  4HIZ A;  5F3W A;  3V4Y A;  4FCX A;  3IB7 A;  4DMG A;  4UWQ A;  2VY9 A;  1SU1 A;  1QFC A;  1TCO A;  4I5N C;  1BPL A;  3F43 A;  2GJU A;  1H4Y A;  1WAR A;  4MOV A;  4J6O A;  1V0E A;  3IVE A;  1USH A;  2WDE A;  4L8K A;  2QJC A;  2Z1A A;  4O43 A;  5DNY A;  1OIE A;  4ZX2 A;  4L1C A;  3H69 A;  3T1I A;  3DSD A;  4QTP A;  2RRL A;  1S8E A;  3IHB A;  3H64 A;  3VSE A;  2ZBM A;  3FLO A;  3GK7 A;  2AS0 A;  3NY7 A;  3QDQ A;  2WDD A;  1AUI A;  2USH A;  3TGH A;  5INB A;  5JPE A;  3IF5 A;  3P71 C;  3H66 A;  5EUX A;  3KBP A;  4V0X A;  3E0J A;  1FJM A;  3ZXN A;  4UT3 B;  5JPF A;  3LDF A;  1V73 A;  4UT3 A;  1TH8 B;  1U32 A;  3N5U A;  3QFM A;  4Q7F A;  3OIZ A;  4FBW A;  2KKN A;  4LAC C;  4MOY A;  1THN B;  1HF2 A;  4ZVZ A;  1SBO A;  1FC7 A;  3IHA A;  1VC1 A;  3DW8 C;  2B78 A;  4LU9 A;  1J7X A;  4IYP C;  3EGG A;  2NYL C;  2Z06 A;  3GVK A;  3H68 A;  3LKL A;  4JC0 A;  3ZTV A;  3GMF A;  2AHD A;  4H2B A;  4JA9 A;  1H4X A;  2JOG A;  5J28 A;  4H2G A;  1W24 A;  3V97 A;  3AV0 A;  3HVQ A;  3D3U A;  2Q8U A;  3IB8 A;  3V8V A;  3K7W C;  3QFN A;  1N6F A;  1FC6 A;  1WXX A;  4FBQ A;  3GVE A;  4H1Y P;  3AGD A;  3ZU0 A;  4V0V A;  2O8A A;  3DJA A;  2BQ8 X;  3K50 A;  3DSC A;  2HYP A;  1XZW A;  3QFK A;  2IAE C;  5GTU A;  3D03 A;  3PSO A;  4H2F A;  1G5B A;  1HO5 A;  4H1S A;  3AGE A;  2OAS A;  2DFJ A;  3GHF A;  3DOR A;  3ICF A;  2HYO A;  3RL4 A;  4KKZ A;  3THO B;  4FBK A;  3QFO A;  2DXN A;  4XS5 A;  3PSN A;  4DGH A;  4MP0 A;  1KBP A;  4OR9 A;  1FC9 A;  2WDF A;  4B2O A;  1II7 A;  3CK2 A;  1FCF A;  3GVL A;  2QFR A;  3C9F A;  3RL5 A;  2IE4 C;  4O4K A;  1K32 A;  4DSY A;  3FGA C;  2NXF A;  1S3L A;  4HD0 A;  4O5G A;  5EUS A;  3IVD A;  5B8I A;  3MGL A;  1T6R A;  1S95 A;  4ORC A;  2CV9 A;  3H67 A;  5C1V A;  2BDX A;  3C0K A;  1Z2X A;  4ORA A;  1MF8 A;  2XMO A;  3JU4 A;  1S3N A;  4H2I A;  4M0V A;  4DHL A;  3QG5 C;  2CWW A;  5EZB A;  1N6D A;  2Z72 A;  3T6O A;  1AUZ A;  3H60 A;  1T70 A;  4WWL A;  1HP1 A;  3AUZ A;  4V0W A;  4AE2 A;  3H63 A;  4LTY A;  3RL3 A;  3H61 A;  3THN A;  2ZO9 B;  1QHW A;  4AEJ A;  1UTE A;  2YEQ A;  4KBP A;  2IE3 C;  1S3M A;  1N6E A;  1Z2W A;  4I5L C;  4ORB A;  3MOG A; 
#chains in the Genus database with same CATH homology
 1T71 A;  5IOH A;  4GHN A;  4UT2 A;  2BCD A;  3C5W C;  4NZV A;  5JJT A;  2O8G A;  5HPE A;  2NYM C;  3RQZ A;  4JA7 A;  4DSY A;  1NNW A;  3E7A A;  3E7B A;  1OI8 A;  1HPU A;  2P6B A;  3DUP A;  1M63 A;  1IT6 A;  1OID A;  3K7V C;  4YKE A;  4DT2 A;  1S70 A;  3H62 B;  2ZOA A;  2QFP A;  1JK7 A;  2YVT A;  2DXL A;  4TUI A;  4G9J A;  1UF3 A;  4IL1 A;  2A22 A;  2WDC A;  3LL8 A;  2NPP C;  3EGH A;  4F0Z A;  3JYF A;  5EQV A;  4XPN A;  1XM7 A;  1WAO 1;  4O24 A;  2HY1 A;  2R17 A;  5F3W A;  3V4Y A;  4FCX A;  3IB7 A;  4UWQ A;  1SU1 A;  1QFC A;  1TCO A;  4I5N C;  1BPL A;  2GJU A;  4MOV A;  1WAR A;  4J6O A;  3IVE A;  1USH A;  2WDE A;  4L8K A;  2QJC A;  2Z1A A;  4O43 A;  5DNY A;  1OIE A;  4ZX2 A;  4L1C A;  3H69 A;  3T1I A;  3DSD A;  2RRL A;  1S8E A;  3H64 A;  4H2F A;  2ZBM A;  3FLO A;  4TUG A;  2WDD A;  5JPE A;  1AUI A;  2USH A;  3TGH A;  5INB A;  3P71 C;  3H66 A;  3KBP A;  4V0X A;  3E0J A;  1FJM A;  4UT3 B;  5JPF A;  1V73 A;  4UT3 A;  1U32 A;  3N5U A;  3QFM A;  4Q7F A;  4FBW A;  2KKN A;  4LAC C;  4MOY A;  4ZVZ A;  1FC7 A;  3DW8 C;  4LU9 A;  1J7X A;  4IYP C;  3EGG A;  2NYL C;  2Z06 A;  3H68 A;  4JC0 A;  3ZTV A;  3GMF A;  2AHD A;  4H2B A;  4JA9 A;  2JOG A;  5J28 A;  4H2G A;  1W24 A;  3AV0 A;  3HVQ A;  2Q8U A;  3IB8 A;  3QFN A;  3K7W C;  1N6F A;  1FC6 A;  4FBQ A;  3GVE A;  4H1Y P;  3ZU0 A;  4V0V A;  2O8A A;  3DJA A;  2BQ8 X;  3K50 A;  3DSC A;  2HYP A;  1XZW A;  3QFK A;  2IAE C;  5GTU A;  3D03 A;  3PSO A;  4H1S A;  1G5B A;  1HO5 A;  2DFJ A;  3GHF A;  3DOR A;  3ICF A;  2HYO A;  3RL4 A;  4KKZ A;  3THO B;  4FBK A;  3QFO A;  2DXN A;  3PSN A;  4MP0 A;  4OR9 A;  1KBP A;  4B2O A;  1FC9 A;  2WDF A;  1II7 A;  3CK2 A;  1FCF A;  2QFR A;  3C9F A;  3RL5 A;  2IE4 C;  4O4K A;  1K32 A;  3FGA C;  2NXF A;  1S3L A;  4HD0 A;  4O5G A;  3IVD A;  5B8I A;  1S95 A;  4ORC A;  5C1V A;  2CV9 A;  3H67 A;  2BDX A;  1Z2X A;  4ORA A;  1MF8 A;  2XMO A;  1S3N A;  4M0V A;  4H2I A;  4DHL A;  3QG5 C;  2Z72 A;  1N6D A;  3H60 A;  4WWL A;  1T70 A;  1HP1 A;  3AUZ A;  4V0W A;  4AE2 A;  3H63 A;  4LTY A;  3RL3 A;  3H61 A;  3THN A;  2ZO9 B;  1QHW A;  4AEJ A;  1UTE A;  2YEQ A;  4KBP A;  2IE3 C;  1S3M A;  1N6E A;  1Z2W A;  4I5L C;  4ORB A;  3MOG A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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