2VY9A

Molecular architecture of the stressosome, a signal integration and transduction hub
Total Genus 35
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
35
sequence length
115
structure length
115
Chain Sequence
PILKVDDYWVVAIEETLHDQSVIQFKEELLHNITGVAGKGLVIDISALEVVDSFVTRVLIEISRLAELLGLPFVLTGIKPAVAITLTEMGLDLRGMATALNLQKGLDKLKNLARM
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Gene regulation
molecule keywords ANTI-SIGMA-FACTOR ANTAGONIST
publication title Molecular Architecture of the "Stressosome," a Signal Integration and Transduction Hub
pubmed doi rcsb
source organism Moorella thermoacetica
total genus 35
structure length 115
sequence length 115
chains with identical sequence B
ec nomenclature
pdb deposition date 2008-07-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01740 STAS STAS domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.750.24 Alpha Beta 2-Layer Sandwich Transcription Regulator spoIIAA STAS domain 2vy9A00
3LLOA 1TILB 4XS5A 3F43A 1VC1A 3OIRA 3T6OA 3IHBA 1SBOA 1THNB 5EZBA 3ZTBA 3NY7A 3IH8A 2KLNA 2VY9A 4QTPA 5EUSA 3LKLA 3AGEA 3IF5A 1TH8B 3ZXNA 1BUZA 3IH9A 5EUUA 1AUZA 1H4YA 5EUXA 3MGLA 5EUZA 3OIZA 3IHAA 4HYLA 5EUWA 1H4ZA 4DGFA 1T6RA 1TIDB 2KA5A 3AGDA 1H4XA 4DGHA
chains in the Genus database with same CATH superfamily
1N6DA 1FC6A 2ZOAA 1FCFA 3OIRA 3T6OA 1THNB 3C0KA 3D03A 3MOGA 3D3UA 3ZTBA 4DMGA 4QTPA 2DXNA 3GVJA 3IF5A 5EUUA 1BPLA 3DORA 3MGLA 3IHAA 5EUWA 4AEJA 3JU4A 3GVLA 3EH7A 1SBOA 3V97A 2KLNA 2VY9A 3QDQA 1AUZA 3OIZA 4HYLA 4DGFA 1FC7A 2KA5A 1J7XA 2DXLA 2B78A 1TILB 1VC1A 1WXXA 1FC9A 5EUSA 3AGEA 3GK7A 3IH9A 1N6EA 3LDFA 5EUXA 3GMFA 1T6RA 3DUPA 4L1CA 1HF2A 2OASA 4GHNA 3LLOA 4JC0A 1K32A 4AE2A 4XS5A 3F43A 1N6FA 1V0EA 3IHBA 5EZBA 3K50A 4HIZA 3NY7A 3IH8A 1V0FA 4L8KA 3LKLA 3GHFA 3DJAA 1TH8B 3ZXNA 1BUZA 1H4YA 5EUZA 1WXWA 1H4ZA 2CWWA 2ZO9B 1TIDB 3AGDA 3V8VA 1H4XA 2RRLA 2AS0A 3GVKA 3VSEA 4DGHA
chains in the Genus database with same CATH topology
3LLOA 1TILB 4XS5A 3F43A 1VC1A 3OIRA 3T6OA 3IHBA 1SBOA 1THNB 5EZBA 3ZTBA 3NY7A 3IH8A 2KLNA 2VY9A 4QTPA 5EUSA 3LKLA 3AGEA 3IF5A 1TH8B 3ZXNA 1BUZA 3IH9A 5EUUA 1AUZA 1H4YA 5EUXA 3MGLA 5EUZA 3OIZA 3IHAA 4HYLA 5EUWA 1H4ZA 4DGFA 1T6RA 1TIDB 2KA5A 3AGDA 1H4XA 4DGHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3LLO A;  1TIL B;  4XS5 A;  3F43 A;  1VC1 A;  3OIR A;  3T6O A;  3IHB A;  1SBO A;  1THN B;  5EZB A;  3ZTB A;  3NY7 A;  3IH8 A;  2KLN A;  2VY9 A;  4QTP A;  5EUS A;  3LKL A;  3AGE A;  3IF5 A;  1TH8 B;  3ZXN A;  1BUZ A;  3IH9 A;  5EUU A;  1AUZ A;  1H4Y A;  5EUX A;  3MGL A;  5EUZ A;  3OIZ A;  3IHA A;  4HYL A;  5EUW A;  1H4Z A;  4DGF A;  1T6R A;  1TID B;  2KA5 A;  3AGD A;  1H4X A;  4DGH A; 
#chains in the Genus database with same CATH topology
 1N6D A;  1FC6 A;  2ZOA A;  1FCF A;  3OIR A;  3T6O A;  1THN B;  3C0K A;  3D03 A;  3MOG A;  3D3U A;  3ZTB A;  4DMG A;  4QTP A;  2DXN A;  3GVJ A;  3IF5 A;  5EUU A;  1BPL A;  3DOR A;  3MGL A;  3IHA A;  5EUW A;  4AEJ A;  3JU4 A;  3GVL A;  3EH7 A;  1SBO A;  3V97 A;  2KLN A;  2VY9 A;  3QDQ A;  1AUZ A;  3OIZ A;  4HYL A;  4DGF A;  1FC7 A;  2KA5 A;  1J7X A;  2DXL A;  2B78 A;  1TIL B;  1VC1 A;  1WXX A;  1FC9 A;  5EUS A;  3AGE A;  3GK7 A;  3IH9 A;  1N6E A;  3LDF A;  5EUX A;  3GMF A;  1T6R A;  3DUP A;  4L1C A;  1HF2 A;  2OAS A;  4GHN A;  3LLO A;  4JC0 A;  1K32 A;  4AE2 A;  4XS5 A;  3F43 A;  1N6F A;  1V0E A;  3IHB A;  5EZB A;  3K50 A;  4HIZ A;  3NY7 A;  3IH8 A;  1V0F A;  4L8K A;  3LKL A;  3GHF A;  3DJA A;  1TH8 B;  3ZXN A;  1BUZ A;  1H4Y A;  5EUZ A;  1WXW A;  1H4Z A;  2CWW A;  2ZO9 B;  1TID B;  3AGD A;  3V8V A;  1H4X A;  2RRL A;  2AS0 A;  3GVK A;  3VSE A;  4DGH A; 
#chains in the Genus database with same CATH homology
 3LLO A;  1TIL B;  4XS5 A;  3F43 A;  1VC1 A;  3OIR A;  3T6O A;  3IHB A;  1SBO A;  1THN B;  5EZB A;  3ZTB A;  3NY7 A;  3IH8 A;  2KLN A;  2VY9 A;  4QTP A;  5EUS A;  3LKL A;  3AGE A;  3IF5 A;  1TH8 B;  3ZXN A;  1BUZ A;  3IH9 A;  5EUU A;  1AUZ A;  1H4Y A;  5EUX A;  3MGL A;  5EUZ A;  3OIZ A;  3IHA A;  4HYL A;  5EUW A;  1H4Z A;  4DGF A;  1T6R A;  1TID B;  2KA5 A;  3AGD A;  1H4X A;  4DGH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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