2DXNA

Glycerophosphodiesterase from enterobacter aerogenes
Total Genus 74
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
74
sequence length
271
structure length
271
Chain Sequence
MLLAHISDTHFRSRGEKLYGFIDVNAANADVVSQLNALRERPDAVVVSGDIVNCGRPEEYQVARQILGSLNYPLYLIPGNHDDKALFLEYLQPLCPQLGSDANNMRCAVDDFATRLLFIDSSRAGTSKGWLTDETISWLEAQLFEGGDKPATIFMHHPPLPLGNAQMDPIACENGHRLLALVERFPSLTRIFCGHNHSLTMTQYRQALISTLPGTVHQVPYCHEDTDPYYDLSPASCLMHRQVGEQWVSYQHSLAHYAGPWLYDENISCPT
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The structure and function of a novel glycerophosphodiesterase from Enterobacter aerogenes
pubmed doi rcsb
source organism Enterobacter aerogenes
molecule tags Hydrolase
molecule keywords Phosphohydrolase
total genus 74
structure length 271
sequence length 271
chains with identical sequence B
ec nomenclature ec 3.1.4.46: Glycerophosphodiester phosphodiesterase.
pdb deposition date 2006-08-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00149 Metallophos Calcineurin-like phosphoesterase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.750.180 Alpha Beta 2-Layer Sandwich Transcription Regulator spoIIAA Transcription Regulator spoIIAA 2dxnA02
3.60.21.40 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 2dxnA01
2DXLA 2ZOAA 2DXNA 2ZO9B 3D03A
chains in the Genus database with same CATH superfamily
3AUZA 3N5UA 3THOB 1S3NA 3EH7A 3MOGA 3LL8A 2NYLC 3H63A 1OIEA 4TUIA 4UT2A 1Z2WA 3DORA 2USHA 3LKLA 3QFOA 4UWQA 2DXLA 3GHFA 1WXWA 2YEQA 4V0VA 2O8GA 1OIDA 1S3MA 1FC9A 5IOHA 3GVLA 2KKNA 2A22A 1N6EA 1XZWA 2P6BA 3DSCA 3EGHA 3E7AA 3ZTVA 2R17A 3RL4A 1T6RA 4KBPA 1MF8A 3V8VA 1JK7A 4IL1A 4ORCA 3CK2A 4MOYA 3GVEA 1Z2XA 3H64A 1XM7A 3IB8A 1M63A 3JU4A 4O43A 4V0WA 1H4XA 2KA5A 5C1VA 3H60A 3ZXNA 1BUZA 2ZBMA 3FGAC 4AEJA 4H1SA 1TILB 4I5LC 4M0VA 3H66A 3DJAA 2KLNA 1T71A 3E7BA 5EUXA 3FLOA 2GJUA 1N6FA 4V0XA 2QFRA 1U32A 2O8AA 3IHBA 5EUWA 2IE4C 1TH8B 1V0EA 2QJCA 2Z1AA 4LU9A 1TIDB 1VC1A 2BDXA 4Q7FA 3C9FA 3T1IA 5JPFA 3T6OA 5EUUA 2BQ8X 2XMOA 5EQVA 4FBQA 3ZU0A 2DXNA 5F3WA 3AV0A 3HVQA 2JOGA 5GTUA 5EUSA 2YVTA 3IVDA 4O5GA 3DSDA 1WARA 4O4KA 3PSNA 3K7WC 1OI8A 2Q8UA 3TGHA 3IHAA 1KBPA 1QFCA 1UTEA 4HD0A 4MP0A 3EGGA 4F0ZA 3AGEA 4HYLA 2Z06A 2IE3C 4H2IA 4JA9A 3K7VC 4H2GA 4LTYA 1IT6A 1H4YA 3QFKA 4ORBA 5DNYA 3IH8A 1G5BA 3E0JA 1II7A 3H68A 4ZVZA 4FCXA 4AE2A 1FC7A 4ZX2A 3P71C 2HYOA 4G9JA 2DFJA 4FBWA 4H1YP 1UF3A 5INBA 3RL3A 1TCOA 3IH9A 2WDFA 3OIRA 5EUZA 1HP1A 3RQZA 3GMFA 3K50A 1NNWA 1S70A 2HYPA 3V97A 4NZVA 1USHA 3IB7A 3JYFA 5J28A 1T70A 4DMGA 2RRLA 3KBPA 1SU1A 2ZOAA 3DW8C 4L8KA 3ICFA 3QG5C 4H2FA 2WDCA 4J6OA 2VY9A 4KKZA 5JJTA 4LACC 3OIZA 4UT3B 1HPUA 4I5NC 2CV9A 4GHNA 1HO5A 3QFNA 3LDFA 1BPLA 4WWLA 1V73A 4MOVA 3THNA 4UT3A 1THNB 2CWWA 4XS5A 3D03A 3GVKA 2QFPA 3IVEA 1FCFA 3NY7A 3H61A 1V0FA 3GK7A 4XPNA 4ORAA 1J7XA 2AHDA 3H69A 3IF5A 4DGHA 2ZO9B 4O24A 1AUIA 2WDEA 3F43A 1S95A 3QFMA 3H67A 4IYPC 5EZBA 4DGFA 2IAEC 5B8IA 4JA7A 3ZTBA 2Z72A 3PSOA 1S8EA 1HF2A 1AUZA 2HY1A 3VSEA 2NPPC 1H4ZA 4TUGA 1WXXA 4HIZA 1S3LA 3DUPA 4DT2A 2BCDA 3H62B 4H2BA 4DSYA 3AGDA 4QTPA 3D3UA 2NXFA 4FBKA 1SBOA 1W24A 2NYMC 2AS0A 1K32A 5HPEA 2B78A 3QDQA 3V4YA 1N6DA 3LLOA 3RL5A 4B2OA 1FJMA 3C5WC 1QHWA 4OR9A 4DHLA 5JPEA 1FC6A 3GVJA 2OASA 4YKEA 2WDDA 4JC0A 3C0KA 4L1CA 3MGLA 1WAO1
chains in the Genus database with same CATH topology
3AUZA 3N5UA 3THOB 1S3NA 3MOGA 3LL8A 2NYLC 3H63A 1OIEA 4TUIA 4UT2A 1Z2WA 3DORA 2USHA 3QFOA 4UWQA 2DXLA 3GHFA 2YEQA 4V0VA 2O8GA 1OIDA 1S3MA 1FC9A 5IOHA 2KKNA 2A22A 1N6EA 1XZWA 2P6BA 3DSCA 3EGHA 3E7AA 3ZTVA 2R17A 3RL4A 4KBPA 1MF8A 1JK7A 4IL1A 4ORCA 3CK2A 4MOYA 3GVEA 1Z2XA 3H64A 1XM7A 3IB8A 1M63A 5HPEA 4O43A 4V0WA 5C1VA 3H60A 2ZBMA 3FGAC 4AEJA 4H1SA 4I5LC 4M0VA 3H66A 3DJAA 1T71A 3E7BA 3FLOA 4V0XA 2GJUA 1N6FA 2QFRA 1U32A 2O8AA 2IE4C 4ZX2A 4Q7FA 4LU9A 2QJCA 2Z1AA 3T1IA 5JPFA 2BDXA 3C9FA 2XMOA 2BQ8X 5EQVA 4FBQA 3ZU0A 2DXNA 5F3WA 3AV0A 3HVQA 2JOGA 5GTUA 2YVTA 3IVDA 4O5GA 3DSDA 1WARA 4O4KA 3PSNA 3K7WC 1OI8A 2Q8UA 3TGHA 1QFCA 1KBPA 1UTEA 4HD0A 4MP0A 3EGGA 4F0ZA 2Z06A 2IE3C 4H2IA 4JA9A 3K7VC 4H2GA 4LTYA 1IT6A 4ORBA 3QFKA 5DNYA 1G5BA 3E0JA 1II7A 3H68A 4ZVZA 4FCXA 4AE2A 1FC7A 3P71C 2HYOA 4G9JA 2DFJA 4FBWA 4H1YP 1UF3A 5INBA 3RL3A 1TCOA 2WDFA 1HP1A 3RQZA 3GMFA 3K50A 1NNWA 1S70A 2HYPA 4NZVA 1USHA 3IB7A 3JYFA 5J28A 1T70A 2RRLA 3KBPA 1SU1A 2ZOAA 3DW8C 4L8KA 3ICFA 3QG5C 4H2FA 2WDCA 4J6OA 4KKZA 5JJTA 4LACC 4UT3B 1HPUA 4I5NC 2CV9A 4GHNA 1HO5A 3QFNA 1BPLA 4WWLA 1V73A 4MOVA 3THNA 4UT3A 3D03A 2QFPA 3IVEA 1FCFA 3H61A 4XPNA 4ORAA 1J7XA 2AHDA 3H69A 2ZO9B 4O24A 1AUIA 2WDEA 1S95A 3QFMA 3H67A 4IYPC 2IAEC 5B8IA 4JA7A 2Z72A 3PSOA 1S8EA 4TUGA 2HY1A 2NPPC 1S3LA 3DUPA 4DT2A 2BCDA 3H62B 4H2BA 4DSYA 4FBKA 2NXFA 1W24A 2NYMC 1K32A 3V4YA 1N6DA 3RL5A 4B2OA 4DHLA 1FJMA 3C5WC 1QHWA 4OR9A 5JPEA 1FC6A 4YKEA 2WDDA 4JC0A 4L1CA 1WAO1
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2DXL A;  2ZOA A;  2DXN A;  2ZO9 B;  3D03 A; 
#chains in the Genus database with same CATH topology
 3AUZ A;  3N5U A;  3THO B;  1S3N A;  3EH7 A;  3MOG A;  3LL8 A;  2NYL C;  3H63 A;  1OIE A;  4TUI A;  4UT2 A;  1Z2W A;  3DOR A;  2USH A;  3LKL A;  3QFO A;  4UWQ A;  2DXL A;  3GHF A;  1WXW A;  2YEQ A;  4V0V A;  2O8G A;  1OID A;  1S3M A;  1FC9 A;  5IOH A;  3GVL A;  2KKN A;  2A22 A;  1N6E A;  1XZW A;  2P6B A;  3DSC A;  3EGH A;  3E7A A;  3ZTV A;  2R17 A;  3RL4 A;  1T6R A;  4KBP A;  1MF8 A;  3V8V A;  1JK7 A;  4IL1 A;  4ORC A;  3CK2 A;  4MOY A;  3GVE A;  1Z2X A;  3H64 A;  1XM7 A;  3IB8 A;  1M63 A;  3JU4 A;  4O43 A;  4V0W A;  1H4X A;  2KA5 A;  5C1V A;  3H60 A;  3ZXN A;  1BUZ A;  2ZBM A;  3FGA C;  4AEJ A;  4H1S A;  1TIL B;  4I5L C;  4M0V A;  3H66 A;  3DJA A;  2KLN A;  1T71 A;  3E7B A;  5EUX A;  3FLO A;  2GJU A;  1N6F A;  4V0X A;  2QFR A;  1U32 A;  2O8A A;  3IHB A;  5EUW A;  2IE4 C;  1TH8 B;  1V0E A;  2QJC A;  2Z1A A;  4LU9 A;  1TID B;  1VC1 A;  2BDX A;  4Q7F A;  3C9F A;  3T1I A;  5JPF A;  3T6O A;  5EUU A;  2BQ8 X;  2XMO A;  5EQV A;  4FBQ A;  3ZU0 A;  2DXN A;  5F3W A;  3AV0 A;  3HVQ A;  2JOG A;  5GTU A;  5EUS A;  2YVT A;  3IVD A;  4O5G A;  3DSD A;  1WAR A;  4O4K A;  3PSN A;  3K7W C;  1OI8 A;  2Q8U A;  3TGH A;  3IHA A;  1KBP A;  1QFC A;  1UTE A;  4HD0 A;  4MP0 A;  3EGG A;  4F0Z A;  3AGE A;  4HYL A;  2Z06 A;  2IE3 C;  4H2I A;  4JA9 A;  3K7V C;  4H2G A;  4LTY A;  1IT6 A;  1H4Y A;  3QFK A;  4ORB A;  5DNY A;  3IH8 A;  1G5B A;  3E0J A;  1II7 A;  3H68 A;  4ZVZ A;  4FCX A;  4AE2 A;  1FC7 A;  4ZX2 A;  3P71 C;  2HYO A;  4G9J A;  2DFJ A;  4FBW A;  4H1Y P;  1UF3 A;  5INB A;  3RL3 A;  1TCO A;  3IH9 A;  2WDF A;  3OIR A;  5EUZ A;  1HP1 A;  3RQZ A;  3GMF A;  3K50 A;  1NNW A;  1S70 A;  2HYP A;  3V97 A;  4NZV A;  1USH A;  3IB7 A;  3JYF A;  5J28 A;  1T70 A;  4DMG A;  2RRL A;  3KBP A;  1SU1 A;  2ZOA A;  3DW8 C;  4L8K A;  3ICF A;  3QG5 C;  4H2F A;  2WDC A;  4J6O A;  2VY9 A;  4KKZ A;  5JJT A;  4LAC C;  3OIZ A;  4UT3 B;  1HPU A;  4I5N C;  2CV9 A;  4GHN A;  1HO5 A;  3QFN A;  3LDF A;  1BPL A;  4WWL A;  1V73 A;  4MOV A;  3THN A;  4UT3 A;  1THN B;  2CWW A;  4XS5 A;  3D03 A;  3GVK A;  2QFP A;  3IVE A;  1FCF A;  3NY7 A;  3H61 A;  1V0F A;  3GK7 A;  4XPN A;  4ORA A;  1J7X A;  2AHD A;  3H69 A;  3IF5 A;  4DGH A;  2ZO9 B;  4O24 A;  1AUI A;  2WDE A;  3F43 A;  1S95 A;  3QFM A;  3H67 A;  4IYP C;  5EZB A;  4DGF A;  2IAE C;  5B8I A;  4JA7 A;  3ZTB A;  2Z72 A;  3PSO A;  1S8E A;  1HF2 A;  1AUZ A;  2HY1 A;  3VSE A;  2NPP C;  1H4Z A;  4TUG A;  1WXX A;  4HIZ A;  1S3L A;  3DUP A;  4DT2 A;  2BCD A;  3H62 B;  4H2B A;  4DSY A;  3AGD A;  4QTP A;  3D3U A;  2NXF A;  4FBK A;  1SBO A;  1W24 A;  2NYM C;  2AS0 A;  1K32 A;  5HPE A;  2B78 A;  3QDQ A;  3V4Y A;  1N6D A;  3LLO A;  3RL5 A;  4B2O A;  1FJM A;  3C5W C;  1QHW A;  4OR9 A;  4DHL A;  5JPE A;  1FC6 A;  3GVJ A;  2OAS A;  4YKE A;  2WDD A;  4JC0 A;  3C0K A;  4L1C A;  3MGL A;  1WAO 1; 
#chains in the Genus database with same CATH homology
 3AUZ A;  3N5U A;  3THO B;  1S3N A;  3MOG A;  3LL8 A;  2NYL C;  3H63 A;  1OIE A;  4TUI A;  4UT2 A;  1Z2W A;  3DOR A;  2USH A;  3QFO A;  4UWQ A;  2DXL A;  3GHF A;  2YEQ A;  4V0V A;  2O8G A;  1OID A;  1S3M A;  1FC9 A;  5IOH A;  2KKN A;  2A22 A;  1N6E A;  1XZW A;  2P6B A;  3DSC A;  3EGH A;  3E7A A;  3ZTV A;  2R17 A;  3RL4 A;  4KBP A;  1MF8 A;  1JK7 A;  4IL1 A;  4ORC A;  3CK2 A;  4MOY A;  3GVE A;  1Z2X A;  3H64 A;  1XM7 A;  3IB8 A;  1M63 A;  5HPE A;  4O43 A;  4V0W A;  5C1V A;  3H60 A;  2ZBM A;  3FGA C;  4AEJ A;  4H1S A;  4I5L C;  4M0V A;  3H66 A;  3DJA A;  1T71 A;  3E7B A;  3FLO A;  4V0X A;  2GJU A;  1N6F A;  2QFR A;  1U32 A;  2O8A A;  2IE4 C;  4ZX2 A;  4Q7F A;  4LU9 A;  2QJC A;  2Z1A A;  3T1I A;  5JPF A;  2BDX A;  3C9F A;  2XMO A;  2BQ8 X;  5EQV A;  4FBQ A;  3ZU0 A;  2DXN A;  5F3W A;  3AV0 A;  3HVQ A;  2JOG A;  5GTU A;  2YVT A;  3IVD A;  4O5G A;  3DSD A;  1WAR A;  4O4K A;  3PSN A;  3K7W C;  1OI8 A;  2Q8U A;  3TGH A;  1QFC A;  1KBP A;  1UTE A;  4HD0 A;  4MP0 A;  3EGG A;  4F0Z A;  2Z06 A;  2IE3 C;  4H2I A;  4JA9 A;  3K7V C;  4H2G A;  4LTY A;  1IT6 A;  4ORB A;  3QFK A;  5DNY A;  1G5B A;  3E0J A;  1II7 A;  3H68 A;  4ZVZ A;  4FCX A;  4AE2 A;  1FC7 A;  3P71 C;  2HYO A;  4G9J A;  2DFJ A;  4FBW A;  4H1Y P;  1UF3 A;  5INB A;  3RL3 A;  1TCO A;  2WDF A;  1HP1 A;  3RQZ A;  3GMF A;  3K50 A;  1NNW A;  1S70 A;  2HYP A;  4NZV A;  1USH A;  3IB7 A;  3JYF A;  5J28 A;  1T70 A;  2RRL A;  3KBP A;  1SU1 A;  2ZOA A;  3DW8 C;  4L8K A;  3ICF A;  3QG5 C;  4H2F A;  2WDC A;  4J6O A;  4KKZ A;  5JJT A;  4LAC C;  4UT3 B;  1HPU A;  4I5N C;  2CV9 A;  4GHN A;  1HO5 A;  3QFN A;  1BPL A;  4WWL A;  1V73 A;  4MOV A;  3THN A;  4UT3 A;  3D03 A;  2QFP A;  3IVE A;  1FCF A;  3H61 A;  4XPN A;  4ORA A;  1J7X A;  2AHD A;  3H69 A;  2ZO9 B;  4O24 A;  1AUI A;  2WDE A;  1S95 A;  3QFM A;  3H67 A;  4IYP C;  2IAE C;  5B8I A;  4JA7 A;  2Z72 A;  3PSO A;  1S8E A;  4TUG A;  2HY1 A;  2NPP C;  1S3L A;  3DUP A;  4DT2 A;  2BCD A;  3H62 B;  4H2B A;  4DSY A;  4FBK A;  2NXF A;  1W24 A;  2NYM C;  1K32 A;  3V4Y A;  1N6D A;  3RL5 A;  4B2O A;  4DHL A;  1FJM A;  3C5W C;  1QHW A;  4OR9 A;  5JPE A;  1FC6 A;  4YKE A;  2WDD A;  4JC0 A;  4L1C A;  1WAO 1; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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