2DXNA

Glycerophosphodiesterase from enterobacter aerogenes
Total Genus 74
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
74
sequence length
271
structure length
271
Chain Sequence
MLLAHISDTHFRSRGEKLYGFIDVNAANADVVSQLNALRERPDAVVVSGDIVNCGRPEEYQVARQILGSLNYPLYLIPGNHDDKALFLEYLQPLCPQLGSDANNMRCAVDDFATRLLFIDSSRAGTSKGWLTDETISWLEAQLFEGGDKPATIFMHHPPLPLGNAQMDPIACENGHRLLALVERFPSLTRIFCGHNHSLTMTQYRQALISTLPGTVHQVPYCHEDTDPYYDLSPASCLMHRQVGEQWVSYQHSLAHYAGPWLYDENISCPT
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
source organism Enterobacter aerogenes
publication title The structure and function of a novel glycerophosphodiesterase from Enterobacter aerogenes
pubmed doi rcsb
molecule keywords Phosphohydrolase
total genus 74
structure length 271
sequence length 271
chains with identical sequence B
ec nomenclature ec 3.1.4.46: Glycerophosphodiester phosphodiesterase.
pdb deposition date 2006-08-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00149 Metallophos Calcineurin-like phosphoesterase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.750.180 Alpha Beta 2-Layer Sandwich Transcription Regulator spoIIAA Transcription Regulator spoIIAA 2dxnA02
3.60.21.40 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 2dxnA01
3D03A 2DXNA 2ZOAA 2DXLA 2ZO9B
chains in the Genus database with same CATH superfamily
3RL4A 3IB8A 1T6RA 5EUZA 1II7A 1KBPA 2O8AA 5GTUA 4DHLA 3OIZA 5F3WA 2ZOAA 4FBQA 1OIEA 2DXLA 4OR9A 4WWLA 5EZBA 1HO5A 3GVEA 3RL3A 1V0FA 4AE2A 4FBWA 3JU4A 3H64A 4M0VA 1K32A 2Z72A 5EUXA 1WAO1 3QFKA 1TIDB 4UWQA 3AUZA 1TCOA 1TILB 4LTYA 2USHA 3IB7A 1FC9A 1V73A 2WDDA 3EGHA 4MOYA 4V0VA 5HPEA 3DSDA 4TUIA 3T6OA 4KBPA 4DSYA 3QG5C 1H4ZA 3MGLA 1H4XA 4QTPA 3EH7A 2XMOA 4ZVZA 4GHNA 3D3UA 4O24A 3QFNA 1S3MA 2IAEC 5EUWA 3T1IA 3PSOA 1FCFA 3IF5A 4AEJA 5JPFA 1MF8A 3AV0A 3LDFA 4O43A 3H63A 5JJTA 3V8VA 2BDXA 2BQ8X 1THNB 2VY9A 1S95A 1M63A 2WDCA 2QJCA 3MOGA 1Z2XA 3K7WC 3RL5A 1N6DA 3GVKA 2NYLC 3LL8A 1HF2A 2R17A 1XM7A 3ICFA 3OIRA 5DNYA 3AGEA 3LKLA 3IH8A 3C5WC 1Z2WA 2CWWA 3ZU0A 4H2GA 3N5UA 4JA9A 2NXFA 1SU1A 4ORCA 2YEQA 2Q8UA 3IH9A 2JOGA 4LU9A 3QFOA 5C1VA 4MP0A 2B78A 1BPLA 4XS5A 3E7AA 3PSNA 2RRLA 3QFMA 4NZVA 3THOB 2HYOA 2QFRA 2HYPA 3K50A 4DT2A 5EUUA 1N6EA 2ZBMA 3H62B 4H2FA 2DFJA 3ZTVA 1AUZA 3IVEA 4O4KA 1QFCA 5INBA 3DW8C 3IHAA 3IVDA 1J7XA 1BUZA 4DGHA 1NNWA 3H68A 4TUGA 1WARA 1FC7A 4ORAA 3RQZA 4I5NC 1WXXA 2A22A 3JYFA 1S3LA 2HY1A 2KLNA 4L1CA 2BCDA 1QHWA 1AUIA 1UTEA 2NPPC 3FLOA 2O8GA 3H61A 1T70A 3HVQA 1N6FA 1H4YA 1OI8A 3GVLA 1WXWA 1VC1A 3VSEA 1XZWA 4H2BA 1S3NA 4ORBA 4V0XA 3THNA 3TGHA 2YVTA 4FCXA 3C0KA 3IHBA 3GK7A 5EQVA 2Z06A 4DMGA 1V0EA 1OIDA 4Q7FA 1UF3A 4XPNA 3AGDA 1S8EA 2OASA 5EUSA 1T71A 2P6BA 4HYLA 3H60A 2DXNA 3F43A 2NYMC 3GVJA 3H66A 3NY7A 2IE3C 4L8KA 3H67A 3H69A 4LACC 3DSCA 2CV9A 3CK2A 1JK7A 4I5LC 2ZO9B 4F0ZA 2AHDA 4UT3A 4YKEA 2IE4C 3FGAC 2Z1AA 3QDQA 2QFPA 2WDEA 3V97A 4O5GA 3LLOA 3KBPA 4ZX2A 2WDFA 1USHA 2KKNA 1SBOA 4G9JA 5B8IA 1HPUA 1TH8B 1IT6A 4DGFA 2AS0A 3GHFA 1U32A 4H2IA 4J6OA 3ZXNA 2GJUA 3K7VC 4IL1A 4KKZA 1W24A 3DJAA 3E0JA 3D03A 4H1SA 4UT3B 3GMFA 4JC0A 4V0WA 4H1YP 4JA7A 5J28A 4B2OA 4UT2A 5IOHA 3E7BA 3ZTBA 4FBKA 4HD0A 4MOVA 3V4YA 3DORA 1G5BA 1FJMA 4IYPC 1S70A 1FC6A 5JPEA 2KA5A 3P71C 4HIZA 3EGGA 1HP1A 3DUPA 3C9FA
chains in the Genus database with same CATH topology
3RL4A 3IB8A 2O8AA 1II7A 1KBPA 5GTUA 4DHLA 5F3WA 2ZOAA 4FBQA 1OIEA 2DXLA 4OR9A 4WWLA 3RL3A 1HO5A 3GVEA 4AE2A 4FBWA 3H64A 4M0VA 1K32A 2Z72A 1WAO1 3QFKA 4UWQA 3AUZA 1TCOA 4LTYA 2USHA 3IB7A 1FC9A 1V73A 2WDDA 3EGHA 4MOYA 4V0VA 5HPEA 3DSDA 4KBPA 4DSYA 3QG5C 2XMOA 4ZVZA 4GHNA 4O24A 3QFNA 1S3MA 2IAEC 3T1IA 3PSOA 1FCFA 4AEJA 5JPFA 1MF8A 3AV0A 4O43A 3H63A 5JJTA 2BDXA 2BQ8X 1S95A 1M63A 2WDCA 2QJCA 3MOGA 1Z2XA 3K7WC 3RL5A 1N6DA 2NYLC 3LL8A 2R17A 1XM7A 3ICFA 5DNYA 3C5WC 1Z2WA 3ZU0A 4H2GA 3N5UA 4JA9A 2NXFA 1SU1A 4ORCA 2YEQA 2Q8UA 2JOGA 4LU9A 3QFOA 5C1VA 4MP0A 1BPLA 3QFMA 3E7AA 3PSNA 2RRLA 4NZVA 3THOB 2HYOA 2QFRA 2HYPA 3K50A 4DT2A 1N6EA 2ZBMA 3H62B 4H2FA 2DFJA 3ZTVA 3IVEA 4O4KA 5INBA 1QFCA 3DW8C 3IVDA 1J7XA 3H68A 4TUGA 1NNWA 1WARA 1FC7A 4ORAA 3RQZA 4I5NC 3JYFA 2A22A 1S3LA 2HY1A 4L1CA 2BCDA 1QHWA 1AUIA 1UTEA 2NPPC 3FLOA 2O8GA 3H61A 1T70A 3HVQA 1N6FA 1OI8A 1XZWA 4H2BA 4ORBA 3THNA 1S3NA 4V0XA 3TGHA 2YVTA 4FCXA 5EQVA 2Z06A 1OIDA 4Q7FA 4XPNA 1UF3A 1S8EA 1T71A 2P6BA 3H60A 2DXNA 3H66A 2NYMC 3H69A 4TUIA 3H67A 2IE3C 4L8KA 4LACC 3DSCA 2CV9A 3CK2A 1JK7A 4I5LC 2ZO9B 4F0ZA 2AHDA 4UT3A 4YKEA 2IE4C 3FGAC 2Z1AA 2QFPA 2WDEA 4O5GA 4ZX2A 3KBPA 2WDFA 1USHA 2KKNA 5B8IA 4G9JA 1HPUA 1IT6A 4H2IA 3GHFA 1U32A 4J6OA 2GJUA 3K7VC 4IL1A 4KKZA 1W24A 3DJAA 3E0JA 3D03A 4H1SA 4UT3B 3GMFA 4JC0A 4V0WA 4H1YP 4JA7A 5J28A 4B2OA 4UT2A 5IOHA 3E7BA 4HD0A 4FBKA 4MOVA 3V4YA 3DORA 1G5BA 1FJMA 4IYPC 1S70A 1FC6A 5JPEA 3P71C 3EGGA 1HP1A 3DUPA 3C9FA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3D03 A;  2DXN A;  2ZOA A;  2DXL A;  2ZO9 B; 
#chains in the Genus database with same CATH topology
 3RL4 A;  3IB8 A;  1T6R A;  5EUZ A;  1II7 A;  1KBP A;  2O8A A;  5GTU A;  4DHL A;  3OIZ A;  5F3W A;  2ZOA A;  4FBQ A;  1OIE A;  2DXL A;  4OR9 A;  4WWL A;  5EZB A;  1HO5 A;  3GVE A;  3RL3 A;  1V0F A;  4AE2 A;  4FBW A;  3JU4 A;  3H64 A;  4M0V A;  1K32 A;  2Z72 A;  5EUX A;  1WAO 1;  3QFK A;  1TID B;  4UWQ A;  3AUZ A;  1TCO A;  1TIL B;  4LTY A;  2USH A;  3IB7 A;  1FC9 A;  1V73 A;  2WDD A;  3EGH A;  4MOY A;  4V0V A;  5HPE A;  3DSD A;  4TUI A;  3T6O A;  4KBP A;  4DSY A;  3QG5 C;  1H4Z A;  3MGL A;  1H4X A;  4QTP A;  3EH7 A;  2XMO A;  4ZVZ A;  4GHN A;  3D3U A;  4O24 A;  3QFN A;  1S3M A;  2IAE C;  5EUW A;  3T1I A;  3PSO A;  1FCF A;  3IF5 A;  4AEJ A;  5JPF A;  1MF8 A;  3AV0 A;  3LDF A;  4O43 A;  3H63 A;  5JJT A;  3V8V A;  2BDX A;  2BQ8 X;  1THN B;  2VY9 A;  1S95 A;  1M63 A;  2WDC A;  2QJC A;  3MOG A;  1Z2X A;  3K7W C;  3RL5 A;  1N6D A;  3GVK A;  2NYL C;  3LL8 A;  1HF2 A;  2R17 A;  1XM7 A;  3ICF A;  3OIR A;  5DNY A;  3AGE A;  3LKL A;  3IH8 A;  3C5W C;  1Z2W A;  2CWW A;  3ZU0 A;  4H2G A;  3N5U A;  4JA9 A;  2NXF A;  1SU1 A;  4ORC A;  2YEQ A;  2Q8U A;  3IH9 A;  2JOG A;  4LU9 A;  3QFO A;  5C1V A;  4MP0 A;  2B78 A;  1BPL A;  4XS5 A;  3E7A A;  3PSN A;  2RRL A;  3QFM A;  4NZV A;  3THO B;  2HYO A;  2QFR A;  2HYP A;  3K50 A;  4DT2 A;  5EUU A;  1N6E A;  2ZBM A;  3H62 B;  4H2F A;  2DFJ A;  3ZTV A;  1AUZ A;  3IVE A;  4O4K A;  1QFC A;  5INB A;  3DW8 C;  3IHA A;  3IVD A;  1J7X A;  1BUZ A;  4DGH A;  1NNW A;  3H68 A;  4TUG A;  1WAR A;  1FC7 A;  4ORA A;  3RQZ A;  4I5N C;  1WXX A;  2A22 A;  3JYF A;  1S3L A;  2HY1 A;  2KLN A;  4L1C A;  2BCD A;  1QHW A;  1AUI A;  1UTE A;  2NPP C;  3FLO A;  2O8G A;  3H61 A;  1T70 A;  3HVQ A;  1N6F A;  1H4Y A;  1OI8 A;  3GVL A;  1WXW A;  1VC1 A;  3VSE A;  1XZW A;  4H2B A;  1S3N A;  4ORB A;  4V0X A;  3THN A;  3TGH A;  2YVT A;  4FCX A;  3C0K A;  3IHB A;  3GK7 A;  5EQV A;  2Z06 A;  4DMG A;  1V0E A;  1OID A;  4Q7F A;  1UF3 A;  4XPN A;  3AGD A;  1S8E A;  2OAS A;  5EUS A;  1T71 A;  2P6B A;  4HYL A;  3H60 A;  2DXN A;  3F43 A;  2NYM C;  3GVJ A;  3H66 A;  3NY7 A;  2IE3 C;  4L8K A;  3H67 A;  3H69 A;  4LAC C;  3DSC A;  2CV9 A;  3CK2 A;  1JK7 A;  4I5L C;  2ZO9 B;  4F0Z A;  2AHD A;  4UT3 A;  4YKE A;  2IE4 C;  3FGA C;  2Z1A A;  3QDQ A;  2QFP A;  2WDE A;  3V97 A;  4O5G A;  3LLO A;  3KBP A;  4ZX2 A;  2WDF A;  1USH A;  2KKN A;  1SBO A;  4G9J A;  5B8I A;  1HPU A;  1TH8 B;  1IT6 A;  4DGF A;  2AS0 A;  3GHF A;  1U32 A;  4H2I A;  4J6O A;  3ZXN A;  2GJU A;  3K7V C;  4IL1 A;  4KKZ A;  1W24 A;  3DJA A;  3E0J A;  3D03 A;  4H1S A;  4UT3 B;  3GMF A;  4JC0 A;  4V0W A;  4H1Y P;  4JA7 A;  5J28 A;  4B2O A;  4UT2 A;  5IOH A;  3E7B A;  3ZTB A;  4FBK A;  4HD0 A;  4MOV A;  3V4Y A;  3DOR A;  1G5B A;  1FJM A;  4IYP C;  1S70 A;  1FC6 A;  5JPE A;  2KA5 A;  3P71 C;  4HIZ A;  3EGG A;  1HP1 A;  3DUP A;  3C9F A; 
#chains in the Genus database with same CATH homology
 3RL4 A;  3IB8 A;  2O8A A;  1II7 A;  1KBP A;  5GTU A;  4DHL A;  5F3W A;  2ZOA A;  4FBQ A;  1OIE A;  2DXL A;  4OR9 A;  4WWL A;  3RL3 A;  1HO5 A;  3GVE A;  4AE2 A;  4FBW A;  3H64 A;  4M0V A;  1K32 A;  2Z72 A;  1WAO 1;  3QFK A;  4UWQ A;  3AUZ A;  1TCO A;  4LTY A;  2USH A;  3IB7 A;  1FC9 A;  1V73 A;  2WDD A;  3EGH A;  4MOY A;  4V0V A;  5HPE A;  3DSD A;  4KBP A;  4DSY A;  3QG5 C;  2XMO A;  4ZVZ A;  4GHN A;  4O24 A;  3QFN A;  1S3M A;  2IAE C;  3T1I A;  3PSO A;  1FCF A;  4AEJ A;  5JPF A;  1MF8 A;  3AV0 A;  4O43 A;  3H63 A;  5JJT A;  2BDX A;  2BQ8 X;  1S95 A;  1M63 A;  2WDC A;  2QJC A;  3MOG A;  1Z2X A;  3K7W C;  3RL5 A;  1N6D A;  2NYL C;  3LL8 A;  2R17 A;  1XM7 A;  3ICF A;  5DNY A;  3C5W C;  1Z2W A;  3ZU0 A;  4H2G A;  3N5U A;  4JA9 A;  2NXF A;  1SU1 A;  4ORC A;  2YEQ A;  2Q8U A;  2JOG A;  4LU9 A;  3QFO A;  5C1V A;  4MP0 A;  1BPL A;  3QFM A;  3E7A A;  3PSN A;  2RRL A;  4NZV A;  3THO B;  2HYO A;  2QFR A;  2HYP A;  3K50 A;  4DT2 A;  1N6E A;  2ZBM A;  3H62 B;  4H2F A;  2DFJ A;  3ZTV A;  3IVE A;  4O4K A;  5INB A;  1QFC A;  3DW8 C;  3IVD A;  1J7X A;  3H68 A;  4TUG A;  1NNW A;  1WAR A;  1FC7 A;  4ORA A;  3RQZ A;  4I5N C;  3JYF A;  2A22 A;  1S3L A;  2HY1 A;  4L1C A;  2BCD A;  1QHW A;  1AUI A;  1UTE A;  2NPP C;  3FLO A;  2O8G A;  3H61 A;  1T70 A;  3HVQ A;  1N6F A;  1OI8 A;  1XZW A;  4H2B A;  4ORB A;  3THN A;  1S3N A;  4V0X A;  3TGH A;  2YVT A;  4FCX A;  5EQV A;  2Z06 A;  1OID A;  4Q7F A;  4XPN A;  1UF3 A;  1S8E A;  1T71 A;  2P6B A;  3H60 A;  2DXN A;  3H66 A;  2NYM C;  3H69 A;  4TUI A;  3H67 A;  2IE3 C;  4L8K A;  4LAC C;  3DSC A;  2CV9 A;  3CK2 A;  1JK7 A;  4I5L C;  2ZO9 B;  4F0Z A;  2AHD A;  4UT3 A;  4YKE A;  2IE4 C;  3FGA C;  2Z1A A;  2QFP A;  2WDE A;  4O5G A;  4ZX2 A;  3KBP A;  2WDF A;  1USH A;  2KKN A;  5B8I A;  4G9J A;  1HPU A;  1IT6 A;  4H2I A;  3GHF A;  1U32 A;  4J6O A;  2GJU A;  3K7V C;  4IL1 A;  4KKZ A;  1W24 A;  3DJA A;  3E0J A;  3D03 A;  4H1S A;  4UT3 B;  3GMF A;  4JC0 A;  4V0W A;  4H1Y P;  4JA7 A;  5J28 A;  4B2O A;  4UT2 A;  5IOH A;  3E7B A;  4HD0 A;  4FBK A;  4MOV A;  3V4Y A;  3DOR A;  1G5B A;  1FJM A;  4IYP C;  1S70 A;  1FC6 A;  5JPE A;  3P71 C;  3EGG A;  1HP1 A;  3DUP A;  3C9F A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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