2DXNA

Glycerophosphodiesterase from enterobacter aerogenes
Total Genus 74
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
74
sequence length
271
structure length
271
Chain Sequence
MLLAHISDTHFRSRGEKLYGFIDVNAANADVVSQLNALRERPDAVVVSGDIVNCGRPEEYQVARQILGSLNYPLYLIPGNHDDKALFLEYLQPLCPQLGSDANNMRCAVDDFATRLLFIDSSRAGTSKGWLTDETISWLEAQLFEGGDKPATIFMHHPPLPLGNAQMDPIACENGHRLLALVERFPSLTRIFCGHNHSLTMTQYRQALISTLPGTVHQVPYCHEDTDPYYDLSPASCLMHRQVGEQWVSYQHSLAHYAGPWLYDENISCPT
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Phosphohydrolase
publication title The structure and function of a novel glycerophosphodiesterase from Enterobacter aerogenes
pubmed doi rcsb
source organism Enterobacter aerogenes
total genus 74
structure length 271
sequence length 271
chains with identical sequence B
ec nomenclature ec 3.1.4.46: Glycerophosphodiester phosphodiesterase.
pdb deposition date 2006-08-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00149 Metallophos Calcineurin-like phosphoesterase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.750.180 Alpha Beta 2-Layer Sandwich Transcription Regulator spoIIAA Transcription Regulator spoIIAA 2dxnA02
3.60.21.40 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 2dxnA01
2ZOAA 2DXLA 2ZO9B 2DXNA 3D03A
chains in the Genus database with same CATH superfamily
5EUUA 3OIZA 1KBPA 4H1SA 4V0XA 2OASA 1II7A 1H4ZA 1OIDA 1XM7A 1SBOA 3E0JA 2KA5A 3E7BA 2Z72A 1U32A 1Z2WA 1QHWA 2O8GA 2O8AA 3AGEA 2IE4C 2KKNA 5C1VA 1G5BA 2QJCA 4O43A 5B8IA 1FC6A 3T6OA 1T70A 1TIDB 2NYMC 1TCOA 3DW8C 4AE2A 2JOGA 3H62B 4I5LC 4LTYA 3GK7A 4V0WA 2VY9A 3IF5A 4DSYA 5EUZA 4TUGA 3C0KA 4WWLA 1BUZA 2ZOAA 1AUZA 4H2BA 4HIZA 3NY7A 2HYOA 3VSEA 3C9FA 4UWQA 3V4YA 2IE3C 1AUIA 4O24A 4ZX2A 4FBWA 1HPUA 1T71A 3PSOA 1FCFA 3IH9A 1V0EA 3H61A 5HPEA 2A22A 1S8EA 5IOHA 2BCDA 3KBPA 3H64A 3D03A 1BPLA 1K32A 4V0VA 1W24A 3EH7A 2WDEA 4FBQA 2R17A 3IB7A 2XMOA 3LL8A 4ZVZA 5INBA 4H2IA 3V8VA 2HY1A 1WAO1 3QFKA 4KBPA 3H69A 4LU9A 2DXNA 3AV0A 3FLOA 1USHA 3GVLA 1S3NA 2WDFA 2Z06A 3P71C 1T6RA 3HVQA 3GVJA 1N6FA 2KLNA 1SU1A 2NPPC 3QDQA 4IYPC 2BDXA 3IVDA 3FGAC 2NXFA 3K7WC 4ORCA 5GTUA 4MOVA 4ORAA 3DUPA 3DORA 1FJMA 3MOGA 3ICFA 2DXLA 2USHA 3QFMA 4XPNA 3THOB 1HP1A 2HYPA 1S95A 3DJAA 1JK7A 3N5UA 2B78A 4QTPA 2QFRA 4KKZA 2Z1AA 1OIEA 3QG5C 3RL3A 5EUSA 1M63A 1H4XA 3ZXNA 4IL1A 4O4KA 3LKLA 4DMGA 3GVEA 5F3WA 3IHAA 4HYLA 1NNWA 1QFCA 1V73A 4MP0A 5EQVA 1THNB 1H4YA 4B2OA 1S3LA 5JPFA 4JA7A 1S70A 5DNYA 3GVKA 2WDCA 1N6EA 3PSNA 2CWWA 1WXXA 2WDDA 3K50A 3K7VC 4FCXA 4ORBA 3QFNA 4JA9A 4UT3A 3AGDA 1J7XA 4TUIA 4F0ZA 3F43A 1FC9A 3DSDA 3IHBA 3V97A 2YEQA 3H67A 4XS5A 4J6OA 1UF3A 1TILB 2CV9A 4Q7FA 2DFJA 4UT3B 3IH8A 3AUZA 3QFOA 2YVTA 4L8KA 1XZWA 4DGHA 2AHDA 1TH8B 1VC1A 3D3UA 3H63A 3JYFA 4FBKA 4G9JA 4JC0A 3E7AA 5EUXA 3H68A 1HF2A 2ZO9B 4DGFA 2IAEC 3LLOA 4GHNA 3RQZA 5JPEA 5JJTA 5J28A 1OI8A 2AS0A 3T1IA 4NZVA 2Q8UA 3GMFA 3CK2A 4H2GA 1UTEA 4DHLA 1N6DA 3RL5A 3IVEA 3LDFA 1HO5A 4HD0A 3RL4A 3TGHA 2QFPA 3THNA 3ZU0A 4DT2A 1IT6A 1MF8A 3GHFA 3H66A 4YKEA 2GJUA 3EGGA 3OIRA 4I5NC 3JU4A 3MGLA 3ZTVA 2NYLC 5EUWA 1S3MA 2P6BA 4H2FA 4H1YP 4M0VA 3DSCA 4OR9A 3H60A 4L1CA 5EZBA 3ZTBA 1WXWA 1Z2XA 2ZBMA 2BQ8X 3IB8A 1V0FA 2RRLA 3C5WC 3EGHA 4O5GA 4MOYA 4AEJA 4LACC 1FC7A 4UT2A 1WARA
chains in the Genus database with same CATH topology
1KBPA 4H1SA 4V0XA 1II7A 1OIDA 1XM7A 3E0JA 3E7BA 2Z72A 1U32A 1Z2WA 1QHWA 2O8GA 2O8AA 5C1VA 2IE4C 2KKNA 1G5BA 2QJCA 4O43A 5B8IA 1FC6A 1T70A 3DW8C 2NYMC 1TCOA 4AE2A 2JOGA 3H62B 4I5LC 4LTYA 4V0WA 4DSYA 4TUGA 4WWLA 2ZOAA 4H2BA 2HYOA 3C9FA 4UWQA 3V4YA 2IE3C 1AUIA 4O24A 4ZX2A 4FBWA 1HPUA 1T71A 3PSOA 1FCFA 3H61A 5IOHA 5HPEA 2A22A 1S8EA 2BCDA 3KBPA 3H64A 3D03A 1BPLA 1K32A 4V0VA 1W24A 2WDEA 4ZVZA 4FBQA 2R17A 3IB7A 2XMOA 3LL8A 5INBA 4H2IA 2HY1A 1WAO1 3QFKA 4LU9A 3H69A 2DXNA 3AV0A 3FLOA 1USHA 1S3NA 2WDFA 2Z06A 3P71C 3HVQA 1N6FA 2NPPC 1SU1A 4IYPC 2BDXA 3IVDA 3FGAC 2NXFA 3K7WC 4ORCA 5GTUA 4MOVA 4ORAA 3DUPA 3DORA 1FJMA 3MOGA 3ICFA 2DXLA 2USHA 3QFMA 4XPNA 3THOB 1HP1A 2HYPA 1S95A 3DJAA 1JK7A 3N5UA 4KKZA 2QFRA 2Z1AA 1OIEA 3QG5C 3RL3A 1M63A 4IL1A 4O4KA 3GVEA 5F3WA 1NNWA 1QFCA 1V73A 5EQVA 4B2OA 1S3LA 5JPFA 4JA7A 1S70A 5DNYA 2WDCA 1N6EA 3PSNA 2WDDA 3K50A 3K7VC 4FCXA 4ORBA 3QFNA 4JA9A 4UT3A 1J7XA 4TUIA 4F0ZA 1FC9A 3DSDA 2YEQA 3H67A 4J6OA 1UF3A 2CV9A 4Q7FA 2DFJA 4UT3B 3AUZA 3QFOA 2YVTA 4L8KA 1XZWA 2AHDA 3JYFA 3H63A 4FBKA 4MP0A 4G9JA 4KBPA 4JC0A 3E7AA 3H68A 3DSCA 2ZO9B 2IAEC 3RQZA 5JPEA 4GHNA 5JJTA 5J28A 1OI8A 3T1IA 4NZVA 2Q8UA 3GMFA 3CK2A 4H2GA 1UTEA 4DHLA 1N6DA 3RL5A 3IVEA 3RL4A 1HO5A 4HD0A 3TGHA 3ZU0A 2QFPA 3THNA 4DT2A 1IT6A 1MF8A 3GHFA 3H66A 4YKEA 2GJUA 3EGGA 4I5NC 3ZTVA 2NYLC 1S3MA 2P6BA 4H2FA 4H1YP 4M0VA 4OR9A 3H60A 4L1CA 1Z2XA 2ZBMA 2BQ8X 3IB8A 2RRLA 3C5WC 3EGHA 4O5GA 4MOYA 4AEJA 4LACC 1FC7A 4UT2A 1WARA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2ZOA A;  2DXL A;  2ZO9 B;  2DXN A;  3D03 A; 
#chains in the Genus database with same CATH topology
 5EUU A;  3OIZ A;  1KBP A;  4H1S A;  4V0X A;  2OAS A;  1II7 A;  1H4Z A;  1OID A;  1XM7 A;  1SBO A;  3E0J A;  2KA5 A;  3E7B A;  2Z72 A;  1U32 A;  1Z2W A;  1QHW A;  2O8G A;  2O8A A;  3AGE A;  2IE4 C;  2KKN A;  5C1V A;  1G5B A;  2QJC A;  4O43 A;  5B8I A;  1FC6 A;  3T6O A;  1T70 A;  1TID B;  2NYM C;  1TCO A;  3DW8 C;  4AE2 A;  2JOG A;  3H62 B;  4I5L C;  4LTY A;  3GK7 A;  4V0W A;  2VY9 A;  3IF5 A;  4DSY A;  5EUZ A;  4TUG A;  3C0K A;  4WWL A;  1BUZ A;  2ZOA A;  1AUZ A;  4H2B A;  4HIZ A;  3NY7 A;  2HYO A;  3VSE A;  3C9F A;  4UWQ A;  3V4Y A;  2IE3 C;  1AUI A;  4O24 A;  4ZX2 A;  4FBW A;  1HPU A;  1T71 A;  3PSO A;  1FCF A;  3IH9 A;  1V0E A;  3H61 A;  5HPE A;  2A22 A;  1S8E A;  5IOH A;  2BCD A;  3KBP A;  3H64 A;  3D03 A;  1BPL A;  1K32 A;  4V0V A;  1W24 A;  3EH7 A;  2WDE A;  4FBQ A;  2R17 A;  3IB7 A;  2XMO A;  3LL8 A;  4ZVZ A;  5INB A;  4H2I A;  3V8V A;  2HY1 A;  1WAO 1;  3QFK A;  4KBP A;  3H69 A;  4LU9 A;  2DXN A;  3AV0 A;  3FLO A;  1USH A;  3GVL A;  1S3N A;  2WDF A;  2Z06 A;  3P71 C;  1T6R A;  3HVQ A;  3GVJ A;  1N6F A;  2KLN A;  1SU1 A;  2NPP C;  3QDQ A;  4IYP C;  2BDX A;  3IVD A;  3FGA C;  2NXF A;  3K7W C;  4ORC A;  5GTU A;  4MOV A;  4ORA A;  3DUP A;  3DOR A;  1FJM A;  3MOG A;  3ICF A;  2DXL A;  2USH A;  3QFM A;  4XPN A;  3THO B;  1HP1 A;  2HYP A;  1S95 A;  3DJA A;  1JK7 A;  3N5U A;  2B78 A;  4QTP A;  2QFR A;  4KKZ A;  2Z1A A;  1OIE A;  3QG5 C;  3RL3 A;  5EUS A;  1M63 A;  1H4X A;  3ZXN A;  4IL1 A;  4O4K A;  3LKL A;  4DMG A;  3GVE A;  5F3W A;  3IHA A;  4HYL A;  1NNW A;  1QFC A;  1V73 A;  4MP0 A;  5EQV A;  1THN B;  1H4Y A;  4B2O A;  1S3L A;  5JPF A;  4JA7 A;  1S70 A;  5DNY A;  3GVK A;  2WDC A;  1N6E A;  3PSN A;  2CWW A;  1WXX A;  2WDD A;  3K50 A;  3K7V C;  4FCX A;  4ORB A;  3QFN A;  4JA9 A;  4UT3 A;  3AGD A;  1J7X A;  4TUI A;  4F0Z A;  3F43 A;  1FC9 A;  3DSD A;  3IHB A;  3V97 A;  2YEQ A;  3H67 A;  4XS5 A;  4J6O A;  1UF3 A;  1TIL B;  2CV9 A;  4Q7F A;  2DFJ A;  4UT3 B;  3IH8 A;  3AUZ A;  3QFO A;  2YVT A;  4L8K A;  1XZW A;  4DGH A;  2AHD A;  1TH8 B;  1VC1 A;  3D3U A;  3H63 A;  3JYF A;  4FBK A;  4G9J A;  4JC0 A;  3E7A A;  5EUX A;  3H68 A;  1HF2 A;  2ZO9 B;  4DGF A;  2IAE C;  3LLO A;  4GHN A;  3RQZ A;  5JPE A;  5JJT A;  5J28 A;  1OI8 A;  2AS0 A;  3T1I A;  4NZV A;  2Q8U A;  3GMF A;  3CK2 A;  4H2G A;  1UTE A;  4DHL A;  1N6D A;  3RL5 A;  3IVE A;  3LDF A;  1HO5 A;  4HD0 A;  3RL4 A;  3TGH A;  2QFP A;  3THN A;  3ZU0 A;  4DT2 A;  1IT6 A;  1MF8 A;  3GHF A;  3H66 A;  4YKE A;  2GJU A;  3EGG A;  3OIR A;  4I5N C;  3JU4 A;  3MGL A;  3ZTV A;  2NYL C;  5EUW A;  1S3M A;  2P6B A;  4H2F A;  4H1Y P;  4M0V A;  3DSC A;  4OR9 A;  3H60 A;  4L1C A;  5EZB A;  3ZTB A;  1WXW A;  1Z2X A;  2ZBM A;  2BQ8 X;  3IB8 A;  1V0F A;  2RRL A;  3C5W C;  3EGH A;  4O5G A;  4MOY A;  4AEJ A;  4LAC C;  1FC7 A;  4UT2 A;  1WAR A; 
#chains in the Genus database with same CATH homology
 1KBP A;  4H1S A;  4V0X A;  1II7 A;  1OID A;  1XM7 A;  3E0J A;  3E7B A;  2Z72 A;  1U32 A;  1Z2W A;  1QHW A;  2O8G A;  2O8A A;  5C1V A;  2IE4 C;  2KKN A;  1G5B A;  2QJC A;  4O43 A;  5B8I A;  1FC6 A;  1T70 A;  3DW8 C;  2NYM C;  1TCO A;  4AE2 A;  2JOG A;  3H62 B;  4I5L C;  4LTY A;  4V0W A;  4DSY A;  4TUG A;  4WWL A;  2ZOA A;  4H2B A;  2HYO A;  3C9F A;  4UWQ A;  3V4Y A;  2IE3 C;  1AUI A;  4O24 A;  4ZX2 A;  4FBW A;  1HPU A;  1T71 A;  3PSO A;  1FCF A;  3H61 A;  5IOH A;  5HPE A;  2A22 A;  1S8E A;  2BCD A;  3KBP A;  3H64 A;  3D03 A;  1BPL A;  1K32 A;  4V0V A;  1W24 A;  2WDE A;  4ZVZ A;  4FBQ A;  2R17 A;  3IB7 A;  2XMO A;  3LL8 A;  5INB A;  4H2I A;  2HY1 A;  1WAO 1;  3QFK A;  4LU9 A;  3H69 A;  2DXN A;  3AV0 A;  3FLO A;  1USH A;  1S3N A;  2WDF A;  2Z06 A;  3P71 C;  3HVQ A;  1N6F A;  2NPP C;  1SU1 A;  4IYP C;  2BDX A;  3IVD A;  3FGA C;  2NXF A;  3K7W C;  4ORC A;  5GTU A;  4MOV A;  4ORA A;  3DUP A;  3DOR A;  1FJM A;  3MOG A;  3ICF A;  2DXL A;  2USH A;  3QFM A;  4XPN A;  3THO B;  1HP1 A;  2HYP A;  1S95 A;  3DJA A;  1JK7 A;  3N5U A;  4KKZ A;  2QFR A;  2Z1A A;  1OIE A;  3QG5 C;  3RL3 A;  1M63 A;  4IL1 A;  4O4K A;  3GVE A;  5F3W A;  1NNW A;  1QFC A;  1V73 A;  5EQV A;  4B2O A;  1S3L A;  5JPF A;  4JA7 A;  1S70 A;  5DNY A;  2WDC A;  1N6E A;  3PSN A;  2WDD A;  3K50 A;  3K7V C;  4FCX A;  4ORB A;  3QFN A;  4JA9 A;  4UT3 A;  1J7X A;  4TUI A;  4F0Z A;  1FC9 A;  3DSD A;  2YEQ A;  3H67 A;  4J6O A;  1UF3 A;  2CV9 A;  4Q7F A;  2DFJ A;  4UT3 B;  3AUZ A;  3QFO A;  2YVT A;  4L8K A;  1XZW A;  2AHD A;  3JYF A;  3H63 A;  4FBK A;  4MP0 A;  4G9J A;  4KBP A;  4JC0 A;  3E7A A;  3H68 A;  3DSC A;  2ZO9 B;  2IAE C;  3RQZ A;  5JPE A;  4GHN A;  5JJT A;  5J28 A;  1OI8 A;  3T1I A;  4NZV A;  2Q8U A;  3GMF A;  3CK2 A;  4H2G A;  1UTE A;  4DHL A;  1N6D A;  3RL5 A;  3IVE A;  3RL4 A;  1HO5 A;  4HD0 A;  3TGH A;  3ZU0 A;  2QFP A;  3THN A;  4DT2 A;  1IT6 A;  1MF8 A;  3GHF A;  3H66 A;  4YKE A;  2GJU A;  3EGG A;  4I5N C;  3ZTV A;  2NYL C;  1S3M A;  2P6B A;  4H2F A;  4H1Y P;  4M0V A;  4OR9 A;  3H60 A;  4L1C A;  1Z2X A;  2ZBM A;  2BQ8 X;  3IB8 A;  2RRL A;  3C5W C;  3EGH A;  4O5G A;  4MOY A;  4AEJ A;  4LAC C;  1FC7 A;  4UT2 A;  1WAR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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