2DXNA

Glycerophosphodiesterase from enterobacter aerogenes
Total Genus 74
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
74
sequence length
271
structure length
271
Chain Sequence
MLLAHISDTHFRSRGEKLYGFIDVNAANADVVSQLNALRERPDAVVVSGDIVNCGRPEEYQVARQILGSLNYPLYLIPGNHDDKALFLEYLQPLCPQLGSDANNMRCAVDDFATRLLFIDSSRAGTSKGWLTDETISWLEAQLFEGGDKPATIFMHHPPLPLGNAQMDPIACENGHRLLALVERFPSLTRIFCGHNHSLTMTQYRQALISTLPGTVHQVPYCHEDTDPYYDLSPASCLMHRQVGEQWVSYQHSLAHYAGPWLYDENISCPT
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The structure and function of a novel glycerophosphodiesterase from Enterobacter aerogenes
pubmed doi rcsb
source organism Enterobacter aerogenes
molecule tags Hydrolase
molecule keywords Phosphohydrolase
total genus 74
structure length 271
sequence length 271
chains with identical sequence B
ec nomenclature ec 3.1.4.46: Glycerophosphodiester phosphodiesterase.
pdb deposition date 2006-08-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00149 Metallophos Calcineurin-like phosphoesterase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.750.180 Alpha Beta 2-Layer Sandwich Transcription Regulator spoIIAA Transcription Regulator spoIIAA 2dxnA02
3.60.21.40 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 2dxnA01
2ZO9B 2DXNA 2ZOAA 3D03A 2DXLA
chains in the Genus database with same CATH superfamily
1H4YA 2BQ8X 4XS5A 1OI8A 3JYFA 4V0XA 5JJTA 2Z1AA 5GTUA 4LACC 1TH8B 5JPFA 4WWLA 5EUSA 5HPEA 5B8IA 2KA5A 4TUGA 1FC9A 2DXNA 2AHDA 2OASA 4FBQA 2AS0A 1NNWA 4H1YP 3E0JA 3N5UA 2BCDA 4DT2A 2YVTA 3CK2A 1BPLA 2QJCA 3V97A 3T1IA 3GK7A 4ORBA 1XZWA 1S8EA 4H2BA 4ZX2A 3IVEA 4JA7A 3MGLA 3VSEA 2P6BA 4XPNA 2IE4C 2DXLA 3EGHA 3E7BA 3FLOA 5J28A 1USHA 3KBPA 4ORAA 4ZVZA 3V4YA 3DSCA 1T6RA 1UF3A 3QFNA 3GVKA 3PSOA 1G5BA 4FBKA 1VC1A 2Z06A 3ZTVA 4MOVA 1OIEA 1IT6A 4Q7FA 1H4ZA 1S70A 1V73A 4O4KA 2GJUA 4LTYA 4FBWA 5DNYA 1Z2WA 4O5GA 2JOGA 3TGHA 3GHFA 2B78A 4DMGA 1V0FA 3IHBA 2NXFA 3EGGA 4H2GA 5EUXA 4O24A 1N6FA 3NY7A 3E7AA 3ZTBA 4M0VA 4MP0A 2HYPA 4GHNA 2Z72A 3AGDA 2CV9A 4UT2A 2NYMC 3IH9A 1N6DA 1M63A 3DUPA 4KBPA 3GVJA 3LL8A 2ZOAA 2NYLC 3C9FA 3P71C 4I5LC 4H1SA 3GVEA 3AGEA 1FC6A 1HO5A 4H2IA 3OIZA 4G9JA 2KLNA 4DHLA 2HY1A 3IB7A 2WDCA 1FJMA 4HD0A 1HP1A 4QTPA 4DGHA 4KKZA 4O43A 2R17A 4L8KA 4MOYA 3LDFA 4I5NC 4J6OA 2USHA 1WARA 1THNB 3T6OA 1W24A 1AUZA 4V0VA 2BDXA 1WXXA 1JK7A 1FCFA 3DW8C 3QG5C 1MF8A 3HVQA 1TIDB 1TILB 1WXWA 3IHAA 3H61A 3H69A 3D03A 2VY9A 1AUIA 2O8AA 1FC7A 3H66A 5EQVA 3H67A 1S95A 2KKNA 3IF5A 3H64A 5IOHA 3AUZA 4DGFA 1J7XA 1OIDA 1TCOA 1T70A 3K7VC 2ZBMA 1UTEA 3QFKA 3GVLA 2QFRA 3H62B 4HIZA 1H4XA 2CWWA 4NZVA 5EUUA 4V0WA 3DSDA 2XMOA 3QFMA 3OIRA 4YKEA 3D3UA 2O8GA 3V8VA 4DSYA 4ORCA 2DFJA 4LU9A 3RL4A 4IYPC 3F43A 1S3LA 4AE2A 2IE3C 5INBA 2YEQA 2QFPA 4H2FA 3PSNA 4HYLA 4L1CA 3H68A 5EZBA 3ZXNA 5EUZA 1QHWA 1HPUA 3C5WC 1XM7A 3QFOA 4IL1A 3MOGA 3K50A 4AEJA 2NPPC 4OR9A 3RL3A 1K32A 1T71A 3K7WC 4UWQA 1U32A 3QDQA 3ZU0A 3GMFA 1SBOA 3LKLA 2ZO9B 2IAEC 2Q8UA 3H63A 1SU1A 5JPEA 3RL5A 3THNA 4JA9A 3IVDA 3H60A 5C1VA 1II7A 1HF2A 1QFCA 3RQZA 2WDFA 1KBPA 1Z2XA 2HYOA 4F0ZA 3IH8A 4B2OA 1BUZA 3AV0A 3IB8A 3DORA 3JU4A 2RRLA 2WDEA 1V0EA 3C0KA 2A22A 1S3MA 4UT3B 4TUIA 3FGAC 1WAO1 3THOB 4JC0A 3EH7A 4FCXA 5F3WA 2WDDA 4UT3A 3ICFA 3DJAA 1S3NA 1N6EA 5EUWA 3LLOA
chains in the Genus database with same CATH topology
2BQ8X 1OI8A 3JYFA 4V0XA 5JJTA 2Z1AA 5GTUA 4LACC 5JPFA 4WWLA 5HPEA 5B8IA 4TUGA 1FC9A 2DXNA 2AHDA 4FBQA 1NNWA 4H1YP 3E0JA 3N5UA 2BCDA 4DT2A 2YVTA 3CK2A 1BPLA 2QJCA 3T1IA 4ORBA 1XZWA 1S8EA 4H2BA 4ZX2A 3IVEA 4JA7A 2P6BA 4XPNA 2IE4C 2DXLA 3EGHA 3E7BA 3FLOA 5J28A 1USHA 3KBPA 4ORAA 4ZVZA 3V4YA 3DSCA 1UF3A 3QFNA 3PSOA 1G5BA 4FBKA 2Z06A 3ZTVA 4MOVA 1OIEA 1IT6A 4Q7FA 1S70A 1V73A 4O4KA 2GJUA 4LTYA 4FBWA 5DNYA 1Z2WA 4O5GA 2JOGA 3TGHA 3GHFA 2NXFA 3EGGA 4H2GA 4O24A 1N6FA 3E7AA 4M0VA 4MP0A 2HYPA 4GHNA 2Z72A 2CV9A 4UT2A 2NYMC 1N6DA 1M63A 3DUPA 4KBPA 3LL8A 2ZOAA 2NYLC 3C9FA 3P71C 4I5LC 4H1SA 3GVEA 1HO5A 1FC6A 4H2IA 4G9JA 4DHLA 2HY1A 3IB7A 2WDCA 1FJMA 4HD0A 1HP1A 4KKZA 4O43A 2R17A 4L8KA 4MOYA 4I5NC 4J6OA 2USHA 1WARA 1W24A 4V0VA 2BDXA 1JK7A 1FCFA 3DW8C 3QG5C 1MF8A 3HVQA 3H61A 3H69A 3D03A 1AUIA 2O8AA 1FC7A 3H66A 5EQVA 3H67A 1S95A 2KKNA 3H64A 5IOHA 3AUZA 1J7XA 1OIDA 1TCOA 1T70A 3K7VC 2ZBMA 1UTEA 3QFKA 4NZVA 2QFRA 3H62B 4V0WA 3DSDA 2XMOA 3QFMA 4YKEA 2O8GA 4DSYA 4ORCA 2DFJA 4LU9A 3RL4A 4IYPC 1S3LA 2IE3C 4AE2A 5INBA 2YEQA 2QFPA 4H2FA 3PSNA 4L1CA 3H68A 1QHWA 1HPUA 3C5WC 1XM7A 3QFOA 4IL1A 3MOGA 3K50A 4AEJA 2NPPC 4OR9A 3RL3A 1K32A 1T71A 3K7WC 4UWQA 1U32A 3ZU0A 3GMFA 2ZO9B 2IAEC 2Q8UA 3H63A 1SU1A 5JPEA 3RL5A 3THNA 4JA9A 3IVDA 3H60A 5C1VA 1II7A 3RQZA 1QFCA 2WDFA 1KBPA 1Z2XA 2HYOA 4F0ZA 4B2OA 3AV0A 3IB8A 3DORA 2RRLA 2WDEA 4UT3B 2A22A 1S3MA 4TUIA 3FGAC 1WAO1 3THOB 4JC0A 4FCXA 5F3WA 2WDDA 4UT3A 3ICFA 3DJAA 1S3NA 1N6EA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2ZO9 B;  2DXN A;  2ZOA A;  3D03 A;  2DXL A; 
#chains in the Genus database with same CATH topology
 1H4Y A;  2BQ8 X;  4XS5 A;  1OI8 A;  3JYF A;  4V0X A;  5JJT A;  2Z1A A;  5GTU A;  4LAC C;  1TH8 B;  5JPF A;  4WWL A;  5EUS A;  5HPE A;  5B8I A;  2KA5 A;  4TUG A;  1FC9 A;  2DXN A;  2AHD A;  2OAS A;  4FBQ A;  2AS0 A;  1NNW A;  4H1Y P;  3E0J A;  3N5U A;  2BCD A;  4DT2 A;  2YVT A;  3CK2 A;  1BPL A;  2QJC A;  3V97 A;  3T1I A;  3GK7 A;  4ORB A;  1XZW A;  1S8E A;  4H2B A;  4ZX2 A;  3IVE A;  4JA7 A;  3MGL A;  3VSE A;  2P6B A;  4XPN A;  2IE4 C;  2DXL A;  3EGH A;  3E7B A;  3FLO A;  5J28 A;  1USH A;  3KBP A;  4ORA A;  4ZVZ A;  3V4Y A;  3DSC A;  1T6R A;  1UF3 A;  3QFN A;  3GVK A;  3PSO A;  1G5B A;  4FBK A;  1VC1 A;  2Z06 A;  3ZTV A;  4MOV A;  1OIE A;  1IT6 A;  4Q7F A;  1H4Z A;  1S70 A;  1V73 A;  4O4K A;  2GJU A;  4LTY A;  4FBW A;  5DNY A;  1Z2W A;  4O5G A;  2JOG A;  3TGH A;  3GHF A;  2B78 A;  4DMG A;  1V0F A;  3IHB A;  2NXF A;  3EGG A;  4H2G A;  5EUX A;  4O24 A;  1N6F A;  3NY7 A;  3E7A A;  3ZTB A;  4M0V A;  4MP0 A;  2HYP A;  4GHN A;  2Z72 A;  3AGD A;  2CV9 A;  4UT2 A;  2NYM C;  3IH9 A;  1N6D A;  1M63 A;  3DUP A;  4KBP A;  3GVJ A;  3LL8 A;  2ZOA A;  2NYL C;  3C9F A;  3P71 C;  4I5L C;  4H1S A;  3GVE A;  3AGE A;  1FC6 A;  1HO5 A;  4H2I A;  3OIZ A;  4G9J A;  2KLN A;  4DHL A;  2HY1 A;  3IB7 A;  2WDC A;  1FJM A;  4HD0 A;  1HP1 A;  4QTP A;  4DGH A;  4KKZ A;  4O43 A;  2R17 A;  4L8K A;  4MOY A;  3LDF A;  4I5N C;  4J6O A;  2USH A;  1WAR A;  1THN B;  3T6O A;  1W24 A;  1AUZ A;  4V0V A;  2BDX A;  1WXX A;  1JK7 A;  1FCF A;  3DW8 C;  3QG5 C;  1MF8 A;  3HVQ A;  1TID B;  1TIL B;  1WXW A;  3IHA A;  3H61 A;  3H69 A;  3D03 A;  2VY9 A;  1AUI A;  2O8A A;  1FC7 A;  3H66 A;  5EQV A;  3H67 A;  1S95 A;  2KKN A;  3IF5 A;  3H64 A;  5IOH A;  3AUZ A;  4DGF A;  1J7X A;  1OID A;  1TCO A;  1T70 A;  3K7V C;  2ZBM A;  1UTE A;  3QFK A;  3GVL A;  2QFR A;  3H62 B;  4HIZ A;  1H4X A;  2CWW A;  4NZV A;  5EUU A;  4V0W A;  3DSD A;  2XMO A;  3QFM A;  3OIR A;  4YKE A;  3D3U A;  2O8G A;  3V8V A;  4DSY A;  4ORC A;  2DFJ A;  4LU9 A;  3RL4 A;  4IYP C;  3F43 A;  1S3L A;  4AE2 A;  2IE3 C;  5INB A;  2YEQ A;  2QFP A;  4H2F A;  3PSN A;  4HYL A;  4L1C A;  3H68 A;  5EZB A;  3ZXN A;  5EUZ A;  1QHW A;  1HPU A;  3C5W C;  1XM7 A;  3QFO A;  4IL1 A;  3MOG A;  3K50 A;  4AEJ A;  2NPP C;  4OR9 A;  3RL3 A;  1K32 A;  1T71 A;  3K7W C;  4UWQ A;  1U32 A;  3QDQ A;  3ZU0 A;  3GMF A;  1SBO A;  3LKL A;  2ZO9 B;  2IAE C;  2Q8U A;  3H63 A;  1SU1 A;  5JPE A;  3RL5 A;  3THN A;  4JA9 A;  3IVD A;  3H60 A;  5C1V A;  1II7 A;  1HF2 A;  1QFC A;  3RQZ A;  2WDF A;  1KBP A;  1Z2X A;  2HYO A;  4F0Z A;  3IH8 A;  4B2O A;  1BUZ A;  3AV0 A;  3IB8 A;  3DOR A;  3JU4 A;  2RRL A;  2WDE A;  1V0E A;  3C0K A;  2A22 A;  1S3M A;  4UT3 B;  4TUI A;  3FGA C;  1WAO 1;  3THO B;  4JC0 A;  3EH7 A;  4FCX A;  5F3W A;  2WDD A;  4UT3 A;  3ICF A;  3DJA A;  1S3N A;  1N6E A;  5EUW A;  3LLO A; 
#chains in the Genus database with same CATH homology
 2BQ8 X;  1OI8 A;  3JYF A;  4V0X A;  5JJT A;  2Z1A A;  5GTU A;  4LAC C;  5JPF A;  4WWL A;  5HPE A;  5B8I A;  4TUG A;  1FC9 A;  2DXN A;  2AHD A;  4FBQ A;  1NNW A;  4H1Y P;  3E0J A;  3N5U A;  2BCD A;  4DT2 A;  2YVT A;  3CK2 A;  1BPL A;  2QJC A;  3T1I A;  4ORB A;  1XZW A;  1S8E A;  4H2B A;  4ZX2 A;  3IVE A;  4JA7 A;  2P6B A;  4XPN A;  2IE4 C;  2DXL A;  3EGH A;  3E7B A;  3FLO A;  5J28 A;  1USH A;  3KBP A;  4ORA A;  4ZVZ A;  3V4Y A;  3DSC A;  1UF3 A;  3QFN A;  3PSO A;  1G5B A;  4FBK A;  2Z06 A;  3ZTV A;  4MOV A;  1OIE A;  1IT6 A;  4Q7F A;  1S70 A;  1V73 A;  4O4K A;  2GJU A;  4LTY A;  4FBW A;  5DNY A;  1Z2W A;  4O5G A;  2JOG A;  3TGH A;  3GHF A;  2NXF A;  3EGG A;  4H2G A;  4O24 A;  1N6F A;  3E7A A;  4M0V A;  4MP0 A;  2HYP A;  4GHN A;  2Z72 A;  2CV9 A;  4UT2 A;  2NYM C;  1N6D A;  1M63 A;  3DUP A;  4KBP A;  3LL8 A;  2ZOA A;  2NYL C;  3C9F A;  3P71 C;  4I5L C;  4H1S A;  3GVE A;  1HO5 A;  1FC6 A;  4H2I A;  4G9J A;  4DHL A;  2HY1 A;  3IB7 A;  2WDC A;  1FJM A;  4HD0 A;  1HP1 A;  4KKZ A;  4O43 A;  2R17 A;  4L8K A;  4MOY A;  4I5N C;  4J6O A;  2USH A;  1WAR A;  1W24 A;  4V0V A;  2BDX A;  1JK7 A;  1FCF A;  3DW8 C;  3QG5 C;  1MF8 A;  3HVQ A;  3H61 A;  3H69 A;  3D03 A;  1AUI A;  2O8A A;  1FC7 A;  3H66 A;  5EQV A;  3H67 A;  1S95 A;  2KKN A;  3H64 A;  5IOH A;  3AUZ A;  1J7X A;  1OID A;  1TCO A;  1T70 A;  3K7V C;  2ZBM A;  1UTE A;  3QFK A;  4NZV A;  2QFR A;  3H62 B;  4V0W A;  3DSD A;  2XMO A;  3QFM A;  4YKE A;  2O8G A;  4DSY A;  4ORC A;  2DFJ A;  4LU9 A;  3RL4 A;  4IYP C;  1S3L A;  2IE3 C;  4AE2 A;  5INB A;  2YEQ A;  2QFP A;  4H2F A;  3PSN A;  4L1C A;  3H68 A;  1QHW A;  1HPU A;  3C5W C;  1XM7 A;  3QFO A;  4IL1 A;  3MOG A;  3K50 A;  4AEJ A;  2NPP C;  4OR9 A;  3RL3 A;  1K32 A;  1T71 A;  3K7W C;  4UWQ A;  1U32 A;  3ZU0 A;  3GMF A;  2ZO9 B;  2IAE C;  2Q8U A;  3H63 A;  1SU1 A;  5JPE A;  3RL5 A;  3THN A;  4JA9 A;  3IVD A;  3H60 A;  5C1V A;  1II7 A;  3RQZ A;  1QFC A;  2WDF A;  1KBP A;  1Z2X A;  2HYO A;  4F0Z A;  4B2O A;  3AV0 A;  3IB8 A;  3DOR A;  2RRL A;  2WDE A;  4UT3 B;  2A22 A;  1S3M A;  4TUI A;  3FGA C;  1WAO 1;  3THO B;  4JC0 A;  4FCX A;  5F3W A;  2WDD A;  4UT3 A;  3ICF A;  3DJA A;  1S3N A;  1N6E A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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