2DXNA

Glycerophosphodiesterase from enterobacter aerogenes
Total Genus 74
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
74
sequence length
271
structure length
271
Chain Sequence
MLLAHISDTHFRSRGEKLYGFIDVNAANADVVSQLNALRERPDAVVVSGDIVNCGRPEEYQVARQILGSLNYPLYLIPGNHDDKALFLEYLQPLCPQLGSDANNMRCAVDDFATRLLFIDSSRAGTSKGWLTDETISWLEAQLFEGGDKPATIFMHHPPLPLGNAQMDPIACENGHRLLALVERFPSLTRIFCGHNHSLTMTQYRQALISTLPGTVHQVPYCHEDTDPYYDLSPASCLMHRQVGEQWVSYQHSLAHYAGPWLYDENISCPT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Phosphohydrolase
publication title The structure and function of a novel glycerophosphodiesterase from Enterobacter aerogenes
pubmed doi rcsb
source organism Enterobacter aerogenes
molecule tags Hydrolase
total genus 74
structure length 271
sequence length 271
chains with identical sequence B
ec nomenclature ec 3.1.4.46: Glycerophosphodiester phosphodiesterase.
pdb deposition date 2006-08-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00149 Metallophos Calcineurin-like phosphoesterase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.750.180 Alpha Beta 2-Layer Sandwich Transcription Regulator spoIIAA Transcription Regulator spoIIAA 2dxnA02
3.60.21.40 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 2dxnA01
3D03A 2DXNA 2ZOAA 2DXLA 2ZO9B
chains in the Genus database with same CATH superfamily
1N6EA 1T71A 4HD0A 5EUWA 2HY1A 2NYMC 1V0EA 2O8GA 3GHFA 3AV0A 3NY7A 4ORCA 3RL5A 3ICFA 3DUPA 3HVQA 1S95A 3K7WC 4NZVA 5EQVA 3ZU0A 2USHA 2KA5A 4UT3A 3MOGA 1WAO1 3QFMA 4FBKA 4H2IA 4LTYA 5DNYA 3H62B 2XMOA 4J6OA 1Z2XA 1U32A 3EH7A 2P6BA 2YVTA 4FBWA 4V0VA 1H4YA 3ZTBA 3JYFA 1II7A 5EZBA 1SU1A 3GVEA 5JJTA 4UT3B 3EGGA 4DHLA 4FCXA 1K32A 3V8VA 1USHA 1FC9A 2Z1AA 1BPLA 4AEJA 3V4YA 1J7XA 3LDFA 1S70A 1SBOA 1VC1A 4TUIA 4ZVZA 4HYLA 3LLOA 1S3MA 2HYPA 4TUGA 1FC6A 3AUZA 3DSCA 2AS0A 1OIEA 3K7VC 4O24A 1N6FA 3H61A 1HF2A 1WXXA 1XM7A 3GVLA 2CWWA 3GMFA 4L1CA 4O5GA 2QJCA 4UWQA 3C0KA 2QFPA 1HP1A 2HYOA 4IYPC 5EUUA 1FC7A 2WDFA 3TGHA 2RRLA 4XS5A 2IE4C 2DXNA 2NPPC 4MOVA 2Z72A 1AUIA 3IB8A 3IF5A 5EUXA 3FLOA 4L8KA 1H4ZA 3IH8A 1OIDA 1Z2WA 2AHDA 3C9FA 5INBA 3H69A 3P71C 1QFCA 1T6RA 3H60A 2WDDA 1XZWA 3KBPA 2BQ8X 3AGEA 3IVDA 4I5NC 3OIRA 2WDEA 3DSDA 3DORA 2O8AA 1MF8A 4JA7A 4ORBA 3OIZA 4OR9A 3QFNA 1S3NA 4V0XA 2BDXA 3IH9A 1BUZA 2JOGA 3C5WC 3E7AA 4H2FA 1HO5A 3E0JA 3E7BA 4QTPA 1TCOA 1V0FA 1H4XA 1WXWA 1M63A 2Q8UA 3IHBA 4IL1A 4YKEA 1NNWA 3EGHA 3DJAA 4ORAA 3RQZA 3F43A 3MGLA 2Z06A 5J28A 3GK7A 5F3WA 3QFOA 4GHNA 1FJMA 4FBQA 1AUZA 4DGFA 2IAEC 4MOYA 1WARA 2A22A 1UTEA 4XPNA 3PSNA 3D03A 1TIDB 5B8IA 1HPUA 1THNB 3DW8C 3RL4A 4UT2A 3CK2A 3IVEA 4KBPA 2ZOAA 4V0WA 1TILB 1T70A 2QFRA 1UF3A 2NYLC 4F0ZA 3JU4A 3ZXNA 4LU9A 4KKZA 3K50A 1S3LA 3D3UA 2YEQA 4O43A 3GVKA 4ZX2A 3QG5C 4LACC 2VY9A 4DSYA 4DGHA 5JPFA 4DT2A 3V97A 3LKLA 4H2BA 1FCFA 3PSOA 4HIZA 2ZO9B 3T6OA 2OASA 1JK7A 1KBPA 4H2GA 2B78A 1OI8A 3THOB 3N5UA 3ZTVA 5JPEA 2NXFA 2ZBMA 3LL8A 2IE3C 3VSEA 5EUZA 5EUSA 1N6DA 2R17A 4H1YP 1IT6A 4WWLA 2KKNA 3RL3A 1QHWA 4I5LC 2BCDA 3H66A 1W24A 2KLNA 3QDQA 1G5BA 5GTUA 4M0VA 4AE2A 3IB7A 1V73A 2WDCA 2CV9A 5HPEA 4JA9A 4B2OA 3AGDA 3H68A 4Q7FA 3T1IA 3H67A 1TH8B 4H1SA 3THNA 4G9JA 3GVJA 4DMGA 5C1VA 4MP0A 4O4KA 3H64A 1S8EA 2GJUA 5IOHA 3QFKA 3FGAC 3H63A 3IHAA 2DXLA 2DFJA 4JC0A
chains in the Genus database with same CATH topology
1N6EA 1T71A 4HD0A 3AV0A 2HY1A 2NYMC 2O8GA 4ORCA 3GHFA 3RL5A 3ICFA 3DUPA 3HVQA 1S95A 3K7WC 4NZVA 5EQVA 3ZU0A 2USHA 4UT3A 3MOGA 1WAO1 3QFMA 4FBKA 4H2IA 4LTYA 5DNYA 3H62B 2XMOA 4J6OA 1Z2XA 1U32A 2P6BA 2YVTA 4FBWA 4V0VA 3JYFA 1II7A 1SU1A 3GVEA 5JJTA 4UT3B 3EGGA 4DHLA 4FCXA 1K32A 1USHA 3V4YA 1FC9A 2Z1AA 1BPLA 4AEJA 1J7XA 1S70A 4TUIA 4ZVZA 4TUGA 1S3MA 2HYPA 1FC6A 3AUZA 3DSCA 3K7VC 1OIEA 4O24A 1N6FA 3H61A 1XM7A 3GMFA 4L1CA 4O5GA 2QJCA 4UWQA 2QFPA 1HP1A 2HYOA 4IYPC 1FC7A 2WDFA 3TGHA 2RRLA 2IE4C 2DXNA 2NPPC 4MOVA 2Z72A 1AUIA 3IB8A 3FLOA 4L8KA 1OIDA 2AHDA 1Z2WA 3C9FA 5INBA 3H69A 3P71C 1QFCA 3H60A 2WDDA 1XZWA 3KBPA 2BQ8X 3IVDA 4I5NC 3DSDA 2WDEA 3DORA 2O8AA 1MF8A 4JA7A 4ORBA 4OR9A 3QFNA 1S3NA 4V0XA 2BDXA 3E7AA 2JOGA 3C5WC 4H2FA 1HO5A 3E0JA 3E7BA 1TCOA 1M63A 4YKEA 2Q8UA 4B2OA 4IL1A 3RQZA 1NNWA 3EGHA 3DJAA 4ORAA 5F3WA 2Z06A 5J28A 3QFOA 4GHNA 1FJMA 4FBQA 2IAEC 4MOYA 1WARA 2A22A 1UTEA 4XPNA 3PSNA 3D03A 5B8IA 1HPUA 3DW8C 3RL4A 4UT2A 3CK2A 3IVEA 4KBPA 2ZOAA 4V0WA 1T70A 2QFRA 1UF3A 2NYLC 4F0ZA 4LU9A 4KKZA 3K50A 1S3LA 2YEQA 4O43A 4ZX2A 3QG5C 4LACC 4DSYA 5JPFA 4DT2A 4H2BA 1FCFA 3PSOA 3ZTVA 2ZO9B 3THOB 1JK7A 1KBPA 4H2GA 1OI8A 3N5UA 5JPEA 2NXFA 2ZBMA 3LL8A 2IE3C 1N6DA 2R17A 4H1YP 1IT6A 4WWLA 2KKNA 3RL3A 1QHWA 4I5LC 2BCDA 3H66A 1W24A 1G5BA 5GTUA 4M0VA 4AE2A 3IB7A 1V73A 2WDCA 2CV9A 5HPEA 4JA9A 3H68A 4Q7FA 3T1IA 3H67A 4H1SA 3THNA 4G9JA 5C1VA 4MP0A 4O4KA 3H64A 1S8EA 2GJUA 5IOHA 3QFKA 3FGAC 3H63A 2DXLA 2DFJA 4JC0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3D03 A;  2DXN A;  2ZOA A;  2DXL A;  2ZO9 B; 
#chains in the Genus database with same CATH topology
 1N6E A;  1T71 A;  4HD0 A;  5EUW A;  2HY1 A;  2NYM C;  1V0E A;  2O8G A;  3GHF A;  3AV0 A;  3NY7 A;  4ORC A;  3RL5 A;  3ICF A;  3DUP A;  3HVQ A;  1S95 A;  3K7W C;  4NZV A;  5EQV A;  3ZU0 A;  2USH A;  2KA5 A;  4UT3 A;  3MOG A;  1WAO 1;  3QFM A;  4FBK A;  4H2I A;  4LTY A;  5DNY A;  3H62 B;  2XMO A;  4J6O A;  1Z2X A;  1U32 A;  3EH7 A;  2P6B A;  2YVT A;  4FBW A;  4V0V A;  1H4Y A;  3ZTB A;  3JYF A;  1II7 A;  5EZB A;  1SU1 A;  3GVE A;  5JJT A;  4UT3 B;  3EGG A;  4DHL A;  4FCX A;  1K32 A;  3V8V A;  1USH A;  1FC9 A;  2Z1A A;  1BPL A;  4AEJ A;  3V4Y A;  1J7X A;  3LDF A;  1S70 A;  1SBO A;  1VC1 A;  4TUI A;  4ZVZ A;  4HYL A;  3LLO A;  1S3M A;  2HYP A;  4TUG A;  1FC6 A;  3AUZ A;  3DSC A;  2AS0 A;  1OIE A;  3K7V C;  4O24 A;  1N6F A;  3H61 A;  1HF2 A;  1WXX A;  1XM7 A;  3GVL A;  2CWW A;  3GMF A;  4L1C A;  4O5G A;  2QJC A;  4UWQ A;  3C0K A;  2QFP A;  1HP1 A;  2HYO A;  4IYP C;  5EUU A;  1FC7 A;  2WDF A;  3TGH A;  2RRL A;  4XS5 A;  2IE4 C;  2DXN A;  2NPP C;  4MOV A;  2Z72 A;  1AUI A;  3IB8 A;  3IF5 A;  5EUX A;  3FLO A;  4L8K A;  1H4Z A;  3IH8 A;  1OID A;  1Z2W A;  2AHD A;  3C9F A;  5INB A;  3H69 A;  3P71 C;  1QFC A;  1T6R A;  3H60 A;  2WDD A;  1XZW A;  3KBP A;  2BQ8 X;  3AGE A;  3IVD A;  4I5N C;  3OIR A;  2WDE A;  3DSD A;  3DOR A;  2O8A A;  1MF8 A;  4JA7 A;  4ORB A;  3OIZ A;  4OR9 A;  3QFN A;  1S3N A;  4V0X A;  2BDX A;  3IH9 A;  1BUZ A;  2JOG A;  3C5W C;  3E7A A;  4H2F A;  1HO5 A;  3E0J A;  3E7B A;  4QTP A;  1TCO A;  1V0F A;  1H4X A;  1WXW A;  1M63 A;  2Q8U A;  3IHB A;  4IL1 A;  4YKE A;  1NNW A;  3EGH A;  3DJA A;  4ORA A;  3RQZ A;  3F43 A;  3MGL A;  2Z06 A;  5J28 A;  3GK7 A;  5F3W A;  3QFO A;  4GHN A;  1FJM A;  4FBQ A;  1AUZ A;  4DGF A;  2IAE C;  4MOY A;  1WAR A;  2A22 A;  1UTE A;  4XPN A;  3PSN A;  3D03 A;  1TID B;  5B8I A;  1HPU A;  1THN B;  3DW8 C;  3RL4 A;  4UT2 A;  3CK2 A;  3IVE A;  4KBP A;  2ZOA A;  4V0W A;  1TIL B;  1T70 A;  2QFR A;  1UF3 A;  2NYL C;  4F0Z A;  3JU4 A;  3ZXN A;  4LU9 A;  4KKZ A;  3K50 A;  1S3L A;  3D3U A;  2YEQ A;  4O43 A;  3GVK A;  4ZX2 A;  3QG5 C;  4LAC C;  2VY9 A;  4DSY A;  4DGH A;  5JPF A;  4DT2 A;  3V97 A;  3LKL A;  4H2B A;  1FCF A;  3PSO A;  4HIZ A;  2ZO9 B;  3T6O A;  2OAS A;  1JK7 A;  1KBP A;  4H2G A;  2B78 A;  1OI8 A;  3THO B;  3N5U A;  3ZTV A;  5JPE A;  2NXF A;  2ZBM A;  3LL8 A;  2IE3 C;  3VSE A;  5EUZ A;  5EUS A;  1N6D A;  2R17 A;  4H1Y P;  1IT6 A;  4WWL A;  2KKN A;  3RL3 A;  1QHW A;  4I5L C;  2BCD A;  3H66 A;  1W24 A;  2KLN A;  3QDQ A;  1G5B A;  5GTU A;  4M0V A;  4AE2 A;  3IB7 A;  1V73 A;  2WDC A;  2CV9 A;  5HPE A;  4JA9 A;  4B2O A;  3AGD A;  3H68 A;  4Q7F A;  3T1I A;  3H67 A;  1TH8 B;  4H1S A;  3THN A;  4G9J A;  3GVJ A;  4DMG A;  5C1V A;  4MP0 A;  4O4K A;  3H64 A;  1S8E A;  2GJU A;  5IOH A;  3QFK A;  3FGA C;  3H63 A;  3IHA A;  2DXL A;  2DFJ A;  4JC0 A; 
#chains in the Genus database with same CATH homology
 1N6E A;  1T71 A;  4HD0 A;  3AV0 A;  2HY1 A;  2NYM C;  2O8G A;  4ORC A;  3GHF A;  3RL5 A;  3ICF A;  3DUP A;  3HVQ A;  1S95 A;  3K7W C;  4NZV A;  5EQV A;  3ZU0 A;  2USH A;  4UT3 A;  3MOG A;  1WAO 1;  3QFM A;  4FBK A;  4H2I A;  4LTY A;  5DNY A;  3H62 B;  2XMO A;  4J6O A;  1Z2X A;  1U32 A;  2P6B A;  2YVT A;  4FBW A;  4V0V A;  3JYF A;  1II7 A;  1SU1 A;  3GVE A;  5JJT A;  4UT3 B;  3EGG A;  4DHL A;  4FCX A;  1K32 A;  1USH A;  3V4Y A;  1FC9 A;  2Z1A A;  1BPL A;  4AEJ A;  1J7X A;  1S70 A;  4TUI A;  4ZVZ A;  4TUG A;  1S3M A;  2HYP A;  1FC6 A;  3AUZ A;  3DSC A;  3K7V C;  1OIE A;  4O24 A;  1N6F A;  3H61 A;  1XM7 A;  3GMF A;  4L1C A;  4O5G A;  2QJC A;  4UWQ A;  2QFP A;  1HP1 A;  2HYO A;  4IYP C;  1FC7 A;  2WDF A;  3TGH A;  2RRL A;  2IE4 C;  2DXN A;  2NPP C;  4MOV A;  2Z72 A;  1AUI A;  3IB8 A;  3FLO A;  4L8K A;  1OID A;  2AHD A;  1Z2W A;  3C9F A;  5INB A;  3H69 A;  3P71 C;  1QFC A;  3H60 A;  2WDD A;  1XZW A;  3KBP A;  2BQ8 X;  3IVD A;  4I5N C;  3DSD A;  2WDE A;  3DOR A;  2O8A A;  1MF8 A;  4JA7 A;  4ORB A;  4OR9 A;  3QFN A;  1S3N A;  4V0X A;  2BDX A;  3E7A A;  2JOG A;  3C5W C;  4H2F A;  1HO5 A;  3E0J A;  3E7B A;  1TCO A;  1M63 A;  4YKE A;  2Q8U A;  4B2O A;  4IL1 A;  3RQZ A;  1NNW A;  3EGH A;  3DJA A;  4ORA A;  5F3W A;  2Z06 A;  5J28 A;  3QFO A;  4GHN A;  1FJM A;  4FBQ A;  2IAE C;  4MOY A;  1WAR A;  2A22 A;  1UTE A;  4XPN A;  3PSN A;  3D03 A;  5B8I A;  1HPU A;  3DW8 C;  3RL4 A;  4UT2 A;  3CK2 A;  3IVE A;  4KBP A;  2ZOA A;  4V0W A;  1T70 A;  2QFR A;  1UF3 A;  2NYL C;  4F0Z A;  4LU9 A;  4KKZ A;  3K50 A;  1S3L A;  2YEQ A;  4O43 A;  4ZX2 A;  3QG5 C;  4LAC C;  4DSY A;  5JPF A;  4DT2 A;  4H2B A;  1FCF A;  3PSO A;  3ZTV A;  2ZO9 B;  3THO B;  1JK7 A;  1KBP A;  4H2G A;  1OI8 A;  3N5U A;  5JPE A;  2NXF A;  2ZBM A;  3LL8 A;  2IE3 C;  1N6D A;  2R17 A;  4H1Y P;  1IT6 A;  4WWL A;  2KKN A;  3RL3 A;  1QHW A;  4I5L C;  2BCD A;  3H66 A;  1W24 A;  1G5B A;  5GTU A;  4M0V A;  4AE2 A;  3IB7 A;  1V73 A;  2WDC A;  2CV9 A;  5HPE A;  4JA9 A;  3H68 A;  4Q7F A;  3T1I A;  3H67 A;  4H1S A;  3THN A;  4G9J A;  5C1V A;  4MP0 A;  4O4K A;  3H64 A;  1S8E A;  2GJU A;  5IOH A;  3QFK A;  3FGA C;  3H63 A;  2DXL A;  2DFJ A;  4JC0 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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