2DXNA

Glycerophosphodiesterase from enterobacter aerogenes
Total Genus 74
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
74
sequence length
271
structure length
271
Chain Sequence
MLLAHISDTHFRSRGEKLYGFIDVNAANADVVSQLNALRERPDAVVVSGDIVNCGRPEEYQVARQILGSLNYPLYLIPGNHDDKALFLEYLQPLCPQLGSDANNMRCAVDDFATRLLFIDSSRAGTSKGWLTDETISWLEAQLFEGGDKPATIFMHHPPLPLGNAQMDPIACENGHRLLALVERFPSLTRIFCGHNHSLTMTQYRQALISTLPGTVHQVPYCHEDTDPYYDLSPASCLMHRQVGEQWVSYQHSLAHYAGPWLYDENISCPT
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Phosphohydrolase
publication title The structure and function of a novel glycerophosphodiesterase from Enterobacter aerogenes
pubmed doi rcsb
source organism Enterobacter aerogenes
total genus 74
structure length 271
sequence length 271
chains with identical sequence B
ec nomenclature ec 3.1.4.46: Glycerophosphodiester phosphodiesterase.
pdb deposition date 2006-08-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00149 Metallophos Calcineurin-like phosphoesterase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.750.180 Alpha Beta 2-Layer Sandwich Transcription Regulator spoIIAA Transcription Regulator spoIIAA 2dxnA02
3.60.21.40 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 2dxnA01
2ZOAA 2ZO9B 2DXNA 3D03A 2DXLA
chains in the Genus database with same CATH superfamily
1OIDA 1N6FA 4DMGA 2Z72A 3D3UA 4AE2A 1T70A 1OIEA 4V0XA 3GK7A 1WARA 3IHAA 2CV9A 5DNYA 3KBPA 3D03A 2O8GA 2QJCA 2USHA 2YVTA 4FBWA 3DSDA 2NYMC 1MF8A 3RL4A 4IYPC 3V8VA 1M63A 3OIZA 1G5BA 4H2FA 2NXFA 2P6BA 5GTUA 3THOB 3LKLA 1H4YA 5J28A 4AEJA 4LU9A 3E0JA 4ORBA 4UT3A 2WDCA 3F43A 4MP0A 1KBPA 2HYPA 2GJUA 2YEQA 2QFPA 2ZBMA 1T6RA 3H61A 3IF5A 4I5LC 3DSCA 3IB8A 3PSOA 2VY9A 3LDFA 2ZOAA 4L8KA 5EUSA 3IB7A 3OIRA 3MGLA 3GVJA 4L1CA 2Z1AA 2BDXA 2DXNA 3N5UA 2CWWA 3IVDA 3E7BA 4JC0A 3T1IA 4DHLA 3IVEA 1II7A 5EZBA 4ZX2A 4TUIA 1FC6A 2IE3C 4UT2A 3EGHA 4H1SA 3JYFA 1QFCA 3HVQA 4HYLA 4XPNA 3DUPA 4IL1A 2QFRA 1T71A 1TH8B 3CK2A 1S3MA 4YKEA 3K7VC 3ZU0A 3GVLA 4DGFA 2R17A 3E7AA 2NYLC 4QTPA 1AUIA 4FBQA 2JOGA 3IHBA 1SU1A 5EUZA 2WDFA 3QG5C 4H2BA 1JK7A 4ZVZA 3QDQA 3GMFA 2BCDA 4LTYA 3IH9A 4UWQA 1N6DA 2O8AA 1IT6A 3VSEA 1H4ZA 1V73A 3ZTBA 1FC9A 1WAO1 2IAEC 3EGGA 4O4KA 4GHNA 3H64A 3H69A 3K7WC 3P71C 4KBPA 4LACC 1HPUA 3K50A 3AUZA 5C1VA 3V4YA 4KKZA 4UT3B 4H2IA 4M0VA 5B8IA 2DXLA 5JPEA 2WDEA 1S95A 4F0ZA 1S3NA 2HYOA 3AV0A 1N6EA 2KA5A 2NPPC 1UTEA 3GHFA 3TGHA 3JU4A 3ZXNA 2IE4C 1FCFA 2Q8UA 1THNB 4JA9A 4MOYA 4O43A 3H63A 3FGAC 1K32A 3DW8C 4HIZA 1XM7A 2BQ8X 3H60A 3QFKA 4HD0A 4B2OA 2KLNA 5JPFA 2DFJA 3IH8A 1FJMA 4O24A 1TIDB 4H2GA 4WWLA 5F3WA 2RRLA 3DJAA 3MOGA 3H66A 1WXWA 3THNA 2WDDA 4V0WA 4XS5A 5EUWA 1USHA 3RQZA 3C9FA 3H62B 3ICFA 1UF3A 3PSNA 4JA7A 1BPLA 4O5GA 4G9JA 4FBKA 1OI8A 4Q7FA 3C5WC 1FC7A 1HF2A 4FCXA 4V0VA 5INBA 4MOVA 2AS0A 5IOHA 1HP1A 1QHWA 3FLOA 1VC1A 1S3LA 3RL3A 3H67A 2KKNA 5HPEA 1V0EA 3NY7A 2A22A 5EUUA 3LLOA 1TCOA 1Z2WA 4J6OA 3DORA 4ORCA 2HY1A 5EUXA 2OASA 2Z06A 5EQVA 3T6OA 1U32A 1SBOA 4NZVA 4H1YP 1S70A 1W24A 1V0FA 2B78A 1XZWA 4I5NC 1AUZA 3GVKA 4ORAA 4TUGA 1Z2XA 3QFMA 3H68A 1J7XA 1HO5A 2AHDA 3LL8A 4OR9A 1S8EA 1WXXA 5JJTA 3ZTVA 3AGEA 3AGDA 1BUZA 2ZO9B 4DGHA 1H4XA 3EH7A 2XMOA 3QFOA 3GVEA 4DT2A 4DSYA 3V97A 3C0KA 1TILB 3RL5A 1NNWA 3QFNA
chains in the Genus database with same CATH topology
1OIDA 1N6FA 2Z72A 4AE2A 1T70A 1OIEA 4V0XA 1WARA 2CV9A 5DNYA 3KBPA 3D03A 2O8GA 2QJCA 2USHA 2YVTA 4FBWA 3DSDA 2NYMC 1MF8A 3RL4A 4IYPC 1M63A 1G5BA 4H2FA 2NXFA 2P6BA 5GTUA 3THOB 5J28A 4AEJA 4LU9A 3E0JA 4ORBA 4UT3A 2WDCA 4MP0A 1KBPA 2HYPA 2GJUA 2YEQA 2QFPA 2ZBMA 3H61A 4I5LC 3DSCA 3IB8A 3PSOA 2ZOAA 4L8KA 3IB7A 4L1CA 2Z1AA 2BDXA 2DXNA 3N5UA 3IVDA 3E7BA 4JC0A 3T1IA 4DHLA 3IVEA 1II7A 4ZX2A 4TUIA 1FC6A 2IE3C 4UT2A 3EGHA 4H1SA 3JYFA 1QFCA 3HVQA 4XPNA 3DUPA 4IL1A 2QFRA 1T71A 3ZU0A 3CK2A 1S3MA 4YKEA 3K7VC 2R17A 3E7AA 2NYLC 4FBQA 1AUIA 2JOGA 1SU1A 2WDFA 3QG5C 4H2BA 1JK7A 4ZVZA 3GMFA 2BCDA 4LTYA 4UWQA 1N6DA 2O8AA 1IT6A 2IAEC 1V73A 1FC9A 1WAO1 3EGGA 4O4KA 4GHNA 3H64A 3H69A 3K7WC 3P71C 4KBPA 4LACC 1HPUA 3K50A 3AUZA 5C1VA 3V4YA 4KKZA 4UT3B 4H2IA 4M0VA 5B8IA 2DXLA 5JPEA 2WDEA 1S95A 4F0ZA 1S3NA 2HYOA 3AV0A 1N6EA 2NPPC 1UTEA 3GHFA 3TGHA 2IE4C 4JA9A 2Q8UA 1FCFA 4MOYA 4O43A 3H63A 3FGAC 1K32A 3DW8C 1XM7A 2BQ8X 3H60A 3QFKA 4HD0A 4B2OA 5JPFA 2DFJA 1FJMA 4O24A 4H2GA 4WWLA 5F3WA 2RRLA 3DJAA 3MOGA 3H66A 3THNA 2WDDA 4V0WA 3RQZA 1USHA 3C9FA 3H62B 3ICFA 3PSNA 4JA7A 1BPLA 4O5GA 4G9JA 4FBKA 1OI8A 4Q7FA 3C5WC 1FC7A 4V0VA 4FCXA 5INBA 4MOVA 5IOHA 1HP1A 1QHWA 3FLOA 1S3LA 3RL3A 3H67A 2KKNA 5HPEA 2A22A 1TCOA 1Z2WA 4J6OA 3DORA 4ORCA 2HY1A 2Z06A 5EQVA 1U32A 4NZVA 4H1YP 1S70A 1W24A 4I5NC 1XZWA 4ORAA 4TUGA 1Z2XA 3QFMA 3H68A 1J7XA 1HO5A 2AHDA 3LL8A 4OR9A 1S8EA 5JJTA 3ZTVA 2ZO9B 2XMOA 4DSYA 3QFOA 3GVEA 4DT2A 1UF3A 3RL5A 1NNWA 3QFNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2ZOA A;  2ZO9 B;  2DXN A;  3D03 A;  2DXL A; 
#chains in the Genus database with same CATH topology
 1OID A;  1N6F A;  4DMG A;  2Z72 A;  3D3U A;  4AE2 A;  1T70 A;  1OIE A;  4V0X A;  3GK7 A;  1WAR A;  3IHA A;  2CV9 A;  5DNY A;  3KBP A;  3D03 A;  2O8G A;  2QJC A;  2USH A;  2YVT A;  4FBW A;  3DSD A;  2NYM C;  1MF8 A;  3RL4 A;  4IYP C;  3V8V A;  1M63 A;  3OIZ A;  1G5B A;  4H2F A;  2NXF A;  2P6B A;  5GTU A;  3THO B;  3LKL A;  1H4Y A;  5J28 A;  4AEJ A;  4LU9 A;  3E0J A;  4ORB A;  4UT3 A;  2WDC A;  3F43 A;  4MP0 A;  1KBP A;  2HYP A;  2GJU A;  2YEQ A;  2QFP A;  2ZBM A;  1T6R A;  3H61 A;  3IF5 A;  4I5L C;  3DSC A;  3IB8 A;  3PSO A;  2VY9 A;  3LDF A;  2ZOA A;  4L8K A;  5EUS A;  3IB7 A;  3OIR A;  3MGL A;  3GVJ A;  4L1C A;  2Z1A A;  2BDX A;  2DXN A;  3N5U A;  2CWW A;  3IVD A;  3E7B A;  4JC0 A;  3T1I A;  4DHL A;  3IVE A;  1II7 A;  5EZB A;  4ZX2 A;  4TUI A;  1FC6 A;  2IE3 C;  4UT2 A;  3EGH A;  4H1S A;  3JYF A;  1QFC A;  3HVQ A;  4HYL A;  4XPN A;  3DUP A;  4IL1 A;  2QFR A;  1T71 A;  1TH8 B;  3CK2 A;  1S3M A;  4YKE A;  3K7V C;  3ZU0 A;  3GVL A;  4DGF A;  2R17 A;  3E7A A;  2NYL C;  4QTP A;  1AUI A;  4FBQ A;  2JOG A;  3IHB A;  1SU1 A;  5EUZ A;  2WDF A;  3QG5 C;  4H2B A;  1JK7 A;  4ZVZ A;  3QDQ A;  3GMF A;  2BCD A;  4LTY A;  3IH9 A;  4UWQ A;  1N6D A;  2O8A A;  1IT6 A;  3VSE A;  1H4Z A;  1V73 A;  3ZTB A;  1FC9 A;  1WAO 1;  2IAE C;  3EGG A;  4O4K A;  4GHN A;  3H64 A;  3H69 A;  3K7W C;  3P71 C;  4KBP A;  4LAC C;  1HPU A;  3K50 A;  3AUZ A;  5C1V A;  3V4Y A;  4KKZ A;  4UT3 B;  4H2I A;  4M0V A;  5B8I A;  2DXL A;  5JPE A;  2WDE A;  1S95 A;  4F0Z A;  1S3N A;  2HYO A;  3AV0 A;  1N6E A;  2KA5 A;  2NPP C;  1UTE A;  3GHF A;  3TGH A;  3JU4 A;  3ZXN A;  2IE4 C;  1FCF A;  2Q8U A;  1THN B;  4JA9 A;  4MOY A;  4O43 A;  3H63 A;  3FGA C;  1K32 A;  3DW8 C;  4HIZ A;  1XM7 A;  2BQ8 X;  3H60 A;  3QFK A;  4HD0 A;  4B2O A;  2KLN A;  5JPF A;  2DFJ A;  3IH8 A;  1FJM A;  4O24 A;  1TID B;  4H2G A;  4WWL A;  5F3W A;  2RRL A;  3DJA A;  3MOG A;  3H66 A;  1WXW A;  3THN A;  2WDD A;  4V0W A;  4XS5 A;  5EUW A;  1USH A;  3RQZ A;  3C9F A;  3H62 B;  3ICF A;  1UF3 A;  3PSN A;  4JA7 A;  1BPL A;  4O5G A;  4G9J A;  4FBK A;  1OI8 A;  4Q7F A;  3C5W C;  1FC7 A;  1HF2 A;  4FCX A;  4V0V A;  5INB A;  4MOV A;  2AS0 A;  5IOH A;  1HP1 A;  1QHW A;  3FLO A;  1VC1 A;  1S3L A;  3RL3 A;  3H67 A;  2KKN A;  5HPE A;  1V0E A;  3NY7 A;  2A22 A;  5EUU A;  3LLO A;  1TCO A;  1Z2W A;  4J6O A;  3DOR A;  4ORC A;  2HY1 A;  5EUX A;  2OAS A;  2Z06 A;  5EQV A;  3T6O A;  1U32 A;  1SBO A;  4NZV A;  4H1Y P;  1S70 A;  1W24 A;  1V0F A;  2B78 A;  1XZW A;  4I5N C;  1AUZ A;  3GVK A;  4ORA A;  4TUG A;  1Z2X A;  3QFM A;  3H68 A;  1J7X A;  1HO5 A;  2AHD A;  3LL8 A;  4OR9 A;  1S8E A;  1WXX A;  5JJT A;  3ZTV A;  3AGE A;  3AGD A;  1BUZ A;  2ZO9 B;  4DGH A;  1H4X A;  3EH7 A;  2XMO A;  3QFO A;  3GVE A;  4DT2 A;  4DSY A;  3V97 A;  3C0K A;  1TIL B;  3RL5 A;  1NNW A;  3QFN A; 
#chains in the Genus database with same CATH homology
 1OID A;  1N6F A;  2Z72 A;  4AE2 A;  1T70 A;  1OIE A;  4V0X A;  1WAR A;  2CV9 A;  5DNY A;  3KBP A;  3D03 A;  2O8G A;  2QJC A;  2USH A;  2YVT A;  4FBW A;  3DSD A;  2NYM C;  1MF8 A;  3RL4 A;  4IYP C;  1M63 A;  1G5B A;  4H2F A;  2NXF A;  2P6B A;  5GTU A;  3THO B;  5J28 A;  4AEJ A;  4LU9 A;  3E0J A;  4ORB A;  4UT3 A;  2WDC A;  4MP0 A;  1KBP A;  2HYP A;  2GJU A;  2YEQ A;  2QFP A;  2ZBM A;  3H61 A;  4I5L C;  3DSC A;  3IB8 A;  3PSO A;  2ZOA A;  4L8K A;  3IB7 A;  4L1C A;  2Z1A A;  2BDX A;  2DXN A;  3N5U A;  3IVD A;  3E7B A;  4JC0 A;  3T1I A;  4DHL A;  3IVE A;  1II7 A;  4ZX2 A;  4TUI A;  1FC6 A;  2IE3 C;  4UT2 A;  3EGH A;  4H1S A;  3JYF A;  1QFC A;  3HVQ A;  4XPN A;  3DUP A;  4IL1 A;  2QFR A;  1T71 A;  3ZU0 A;  3CK2 A;  1S3M A;  4YKE A;  3K7V C;  2R17 A;  3E7A A;  2NYL C;  4FBQ A;  1AUI A;  2JOG A;  1SU1 A;  2WDF A;  3QG5 C;  4H2B A;  1JK7 A;  4ZVZ A;  3GMF A;  2BCD A;  4LTY A;  4UWQ A;  1N6D A;  2O8A A;  1IT6 A;  2IAE C;  1V73 A;  1FC9 A;  1WAO 1;  3EGG A;  4O4K A;  4GHN A;  3H64 A;  3H69 A;  3K7W C;  3P71 C;  4KBP A;  4LAC C;  1HPU A;  3K50 A;  3AUZ A;  5C1V A;  3V4Y A;  4KKZ A;  4UT3 B;  4H2I A;  4M0V A;  5B8I A;  2DXL A;  5JPE A;  2WDE A;  1S95 A;  4F0Z A;  1S3N A;  2HYO A;  3AV0 A;  1N6E A;  2NPP C;  1UTE A;  3GHF A;  3TGH A;  2IE4 C;  4JA9 A;  2Q8U A;  1FCF A;  4MOY A;  4O43 A;  3H63 A;  3FGA C;  1K32 A;  3DW8 C;  1XM7 A;  2BQ8 X;  3H60 A;  3QFK A;  4HD0 A;  4B2O A;  5JPF A;  2DFJ A;  1FJM A;  4O24 A;  4H2G A;  4WWL A;  5F3W A;  2RRL A;  3DJA A;  3MOG A;  3H66 A;  3THN A;  2WDD A;  4V0W A;  3RQZ A;  1USH A;  3C9F A;  3H62 B;  3ICF A;  3PSN A;  4JA7 A;  1BPL A;  4O5G A;  4G9J A;  4FBK A;  1OI8 A;  4Q7F A;  3C5W C;  1FC7 A;  4V0V A;  4FCX A;  5INB A;  4MOV A;  5IOH A;  1HP1 A;  1QHW A;  3FLO A;  1S3L A;  3RL3 A;  3H67 A;  2KKN A;  5HPE A;  2A22 A;  1TCO A;  1Z2W A;  4J6O A;  3DOR A;  4ORC A;  2HY1 A;  2Z06 A;  5EQV A;  1U32 A;  4NZV A;  4H1Y P;  1S70 A;  1W24 A;  4I5N C;  1XZW A;  4ORA A;  4TUG A;  1Z2X A;  3QFM A;  3H68 A;  1J7X A;  1HO5 A;  2AHD A;  3LL8 A;  4OR9 A;  1S8E A;  5JJT A;  3ZTV A;  2ZO9 B;  2XMO A;  4DSY A;  3QFO A;  3GVE A;  4DT2 A;  1UF3 A;  3RL5 A;  1NNW A;  3QFN A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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