1TH8B

Crystal structures of the adp and atp bound forms of the bacillus anti-sigma factor spoiiab in complex with the anti-anti-sigma spoiiaa: inhibitory complex with adp, crystal form ii
Total Genus 40
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
40
sequence length
115
structure length
115
Chain Sequence
SLAIDLEVKQDVLIVRLSGELDHHTAEELREQVTDVLENRAIRHIVLNLGQLTFMDSSGLGVILGRYKQIKNVGGQMVVCAVSPAVKRLFDMSGLFKIIRVEADEQFALQALGVA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription
molecule keywords Anti-sigma F factor
publication title Crystal Structures of the ADP and ATP Bound Forms of the Bacillus Anti-sigma Factor SpoIIAB in Complex with the Anti-anti-sigma SpoIIAA.
pubmed doi rcsb
source organism Geobacillus stearothermophilus
total genus 40
structure length 115
sequence length 115
ec nomenclature
pdb deposition date 2004-06-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF01740 STAS STAS domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.750.24 Alpha Beta 2-Layer Sandwich Transcription Regulator spoIIAA STAS domain 1th8B00
3IHAA 3LLOA 3NY7A 3IF5A 5EUSA 3ZXNA 4DGFA 1AUZA 1H4XA 3AGDA 1TH8B 3IH8A 4XS5A 4QTPA 5EZBA 2VY9A 1THNB 1VC1A 3F43A 5EUXA 5EUZA 5EUWA 1H4ZA 4DGHA 2KA5A 4HYLA 1TILB 5EUUA 3AGEA 3T6OA 1T6RA 1SBOA 3IH9A 3IHBA 3OIRA 3LKLA 3ZTBA 1BUZA 3OIZA 1TIDB 2KLNA 1H4YA 3MGLA
chains in the Genus database with same CATH superfamily
3VSEA 1AUZA 4QTPA 2DXLA 1VC1A 3GK7A 2ZO9B 5EUWA 1H4ZA 4DGHA 4HYLA 3EH7A 1TILB 1BPLA 3IH9A 1WXWA 1TIDB 3NY7A 3MGLA 2B78A 3IHAA 1N6FA 1K32A 3GMFA 1H4XA 1V0FA 5EZBA 5EUXA 1WXXA 1FC7A 3C0KA 2ZOAA 3DORA 2CWWA 2OASA 3D03A 3DJAA 4JC0A 1HF2A 3ZTBA 1BUZA 3OIZA 1H4YA 1N6EA 3LLOA 2RRLA 3JU4A 3QDQA 5EUSA 1V0EA 3IH8A 4XS5A 3GVKA 3LDFA 2VY9A 1FCFA 1THNB 3GVJA 3D3UA 3F43A 1N6DA 2DXNA 1J7XA 5EUUA 3GHFA 1SBOA 3OIRA 2KLNA 4HIZA 4GHNA 4L1CA 3DUPA 3V8VA 3K50A 2AS0A 3IF5A 3ZXNA 4DGFA 4DMGA 3AGDA 1TH8B 3GVLA 4AE2A 3V97A 1FC9A 4AEJA 1FC6A 3MOGA 5EUZA 2KA5A 4L8KA 3AGEA 3T6OA 1T6RA 3IHBA 3LKLA
chains in the Genus database with same CATH topology
3IHAA 3LLOA 3NY7A 3IF5A 5EUSA 3ZXNA 4DGFA 1AUZA 1H4XA 3AGDA 1TH8B 3IH8A 4XS5A 4QTPA 5EZBA 2VY9A 1THNB 1VC1A 3F43A 5EUXA 5EUZA 5EUWA 1H4ZA 4DGHA 2KA5A 4HYLA 1TILB 5EUUA 3AGEA 3T6OA 1T6RA 1SBOA 3IH9A 3IHBA 3OIRA 3LKLA 3ZTBA 1BUZA 3OIZA 1TIDB 2KLNA 1H4YA 3MGLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3IHA A;  3LLO A;  3NY7 A;  3IF5 A;  5EUS A;  3ZXN A;  4DGF A;  1AUZ A;  1H4X A;  3AGD A;  1TH8 B;  3IH8 A;  4XS5 A;  4QTP A;  5EZB A;  2VY9 A;  1THN B;  1VC1 A;  3F43 A;  5EUX A;  5EUZ A;  5EUW A;  1H4Z A;  4DGH A;  2KA5 A;  4HYL A;  1TIL B;  5EUU A;  3AGE A;  3T6O A;  1T6R A;  1SBO A;  3IH9 A;  3IHB A;  3OIR A;  3LKL A;  3ZTB A;  1BUZ A;  3OIZ A;  1TID B;  2KLN A;  1H4Y A;  3MGL A; 
#chains in the Genus database with same CATH topology
 3VSE A;  1AUZ A;  4QTP A;  2DXL A;  1VC1 A;  3GK7 A;  2ZO9 B;  5EUW A;  1H4Z A;  4DGH A;  4HYL A;  3EH7 A;  1TIL B;  1BPL A;  3IH9 A;  1WXW A;  1TID B;  3NY7 A;  3MGL A;  2B78 A;  3IHA A;  1N6F A;  1K32 A;  3GMF A;  1H4X A;  1V0F A;  5EZB A;  5EUX A;  1WXX A;  1FC7 A;  3C0K A;  2ZOA A;  3DOR A;  2CWW A;  2OAS A;  3D03 A;  3DJA A;  4JC0 A;  1HF2 A;  3ZTB A;  1BUZ A;  3OIZ A;  1H4Y A;  1N6E A;  3LLO A;  2RRL A;  3JU4 A;  3QDQ A;  5EUS A;  1V0E A;  3IH8 A;  4XS5 A;  3GVK A;  3LDF A;  2VY9 A;  1FCF A;  1THN B;  3GVJ A;  3D3U A;  3F43 A;  1N6D A;  2DXN A;  1J7X A;  5EUU A;  3GHF A;  1SBO A;  3OIR A;  2KLN A;  4HIZ A;  4GHN A;  4L1C A;  3DUP A;  3V8V A;  3K50 A;  2AS0 A;  3IF5 A;  3ZXN A;  4DGF A;  4DMG A;  3AGD A;  1TH8 B;  3GVL A;  4AE2 A;  3V97 A;  1FC9 A;  4AEJ A;  1FC6 A;  3MOG A;  5EUZ A;  2KA5 A;  4L8K A;  3AGE A;  3T6O A;  1T6R A;  3IHB A;  3LKL A; 
#chains in the Genus database with same CATH homology
 3IHA A;  3LLO A;  3NY7 A;  3IF5 A;  5EUS A;  3ZXN A;  4DGF A;  1AUZ A;  1H4X A;  3AGD A;  1TH8 B;  3IH8 A;  4XS5 A;  4QTP A;  5EZB A;  2VY9 A;  1THN B;  1VC1 A;  3F43 A;  5EUX A;  5EUZ A;  5EUW A;  1H4Z A;  4DGH A;  2KA5 A;  4HYL A;  1TIL B;  5EUU A;  3AGE A;  3T6O A;  1T6R A;  1SBO A;  3IH9 A;  3IHB A;  3OIR A;  3LKL A;  3ZTB A;  1BUZ A;  3OIZ A;  1TID B;  2KLN A;  1H4Y A;  3MGL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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