3GHFA

Crystal structure of the septum site-determining protein minc from salmonella typhimurium
Total Genus 27
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
100
structure length
100
Chain Sequence
PIELKGSSFTLSVVHLHEAEPEVIRQALEDKIAQAPAFLKHAPVVINVSGLESPVNWPELHKIVTSTGLRIIGVSGCKDASLKVEIDRMGLPLLTEGKEK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Cell cycle
molecule keywords Septum site-determining protein minC
publication title Crystal structure of the septum site-determining protein minC from Salmonella typhimurium
rcsb
source organism Salmonella typhimurium lt2
total genus 27
structure length 100
sequence length 100
ec nomenclature
pdb deposition date 2009-03-03
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.750.120 Alpha Beta 2-Layer Sandwich Transcription Regulator spoIIAA Transcription Regulator spoIIAA 3ghfA00
4L1CA 3GHFA
chains in the Genus database with same CATH superfamily
3C0KA 1N6FA 1V0FA 1VC1A 3AGDA 3GK7A 3D3UA 3DJAA 1TIDB 5EZBA 1FC7A 5EUZA 1HF2A 3LLOA 1FC9A 1FC6A 5EUUA 1WXXA 1N6EA 1TH8B 4AE2A 3EH7A 1WXWA 4DGHA 1K32A 2CWWA 4HYLA 3IH9A 5EUSA 1AUZA 1H4XA 3MOGA 1T6RA 2ZOAA 1J7XA 1BPLA 2KA5A 1SBOA 4L8KA 3IF5A 4QTPA 5EUXA 3LDFA 3VSEA 2OASA 3IH8A 3IHAA 3OIZA 4HIZA 2ZO9B 2AS0A 4DGFA 3V97A 3MGLA 3GVLA 3T6OA 1V0EA 3ZXNA 5EUWA 4GHNA 3QDQA 3LKLA 3GVJA 2DXNA 3OIRA 3V8VA 3NY7A 3D03A 1H4ZA 3GVKA 2DXLA 1TILB 4L1CA 3JU4A 2KLNA 3DORA 3GHFA 1THNB 1BUZA 3K50A 3F43A 2RRLA 3ZTBA 1H4YA 3GMFA 3DUPA 3AGEA 1N6DA 4AEJA 4DMGA 4JC0A 4XS5A 3IHBA 2VY9A 1FCFA 2B78A
chains in the Genus database with same CATH topology
4L1CA 2ZO9B 3DORA 3GHFA 1N6FA 1K32A 4AE2A 3K50A 2RRLA 3DJAA 3MOGA 3GMFA 3DUPA 2ZOAA 1FC7A 4GHNA 1J7XA 1BPLA 1N6DA 4AEJA 2DXNA 4JC0A 4L8KA 1FC9A 3D03A 1FC6A 2DXLA 1FCFA 1N6EA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4L1C A;  3GHF A; 
#chains in the Genus database with same CATH topology
 3C0K A;  1N6F A;  1V0F A;  1VC1 A;  3AGD A;  3GK7 A;  3D3U A;  3DJA A;  1TID B;  5EZB A;  1FC7 A;  5EUZ A;  1HF2 A;  3LLO A;  1FC9 A;  1FC6 A;  5EUU A;  1WXX A;  1N6E A;  1TH8 B;  4AE2 A;  3EH7 A;  1WXW A;  4DGH A;  1K32 A;  2CWW A;  4HYL A;  3IH9 A;  5EUS A;  1AUZ A;  1H4X A;  3MOG A;  1T6R A;  2ZOA A;  1J7X A;  1BPL A;  2KA5 A;  1SBO A;  4L8K A;  3IF5 A;  4QTP A;  5EUX A;  3LDF A;  3VSE A;  2OAS A;  3IH8 A;  3IHA A;  3OIZ A;  4HIZ A;  2ZO9 B;  2AS0 A;  4DGF A;  3V97 A;  3MGL A;  3GVL A;  3T6O A;  1V0E A;  3ZXN A;  5EUW A;  4GHN A;  3QDQ A;  3LKL A;  3GVJ A;  2DXN A;  3OIR A;  3V8V A;  3NY7 A;  3D03 A;  1H4Z A;  3GVK A;  2DXL A;  1TIL B;  4L1C A;  3JU4 A;  2KLN A;  3DOR A;  3GHF A;  1THN B;  1BUZ A;  3K50 A;  3F43 A;  2RRL A;  3ZTB A;  1H4Y A;  3GMF A;  3DUP A;  3AGE A;  1N6D A;  4AEJ A;  4DMG A;  4JC0 A;  4XS5 A;  3IHB A;  2VY9 A;  1FCF A;  2B78 A; 
#chains in the Genus database with same CATH homology
 4L1C A;  2ZO9 B;  3DOR A;  3GHF A;  1N6F A;  1K32 A;  4AE2 A;  3K50 A;  2RRL A;  3DJA A;  3MOG A;  3GMF A;  3DUP A;  2ZOA A;  1FC7 A;  4GHN A;  1J7X A;  1BPL A;  1N6D A;  4AEJ A;  2DXN A;  4JC0 A;  4L8K A;  1FC9 A;  3D03 A;  1FC6 A;  2DXL A;  1FCF A;  1N6E A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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