3OIZA

Crystal structure of antisigma-factor antagonist, stas domain from rhodobacter sphaeroides
Total Genus 26
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
92
structure length
92
Chain Sequence
SNALFGVTSELSKDGRERIYRVEGQLFYASVEDFMAAFDFREALDRVVIDVSRAHIWDISSVQALDMAVLKFRREGAEVRIVGMNEASETMV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Crystal structure of antisigma-factor antagonist, STAS domain from Rhodobacter sphaeroides
rcsb
molecule tags Membrane protein
source organism Rhodobacter sphaeroides
molecule keywords Antisigma-factor antagonist, STAS
total genus 26
structure length 92
sequence length 92
ec nomenclature
pdb deposition date 2010-08-20
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.750.24 Alpha Beta 2-Layer Sandwich Transcription Regulator spoIIAA STAS domain 3oizA00
3OIZA 3IH8A 3IF5A 3IHBA 1T6RA 1H4YA 3IH9A 1AUZA 1H4XA 1TH8B 3AGEA 3ZXNA 2KLNA 5EUZA 1VC1A 1THNB 5EUWA 3ZTBA 5EZBA 2VY9A 1TILB 3LKLA 4QTPA 2KA5A 1H4ZA 3IHAA 1SBOA 3F43A 4XS5A 3OIRA 4HYLA 5EUXA 4DGFA 3MGLA 3NY7A 5EUSA 1BUZA 5EUUA 3AGDA 3LLOA 3T6OA 4DGHA 1TIDB
chains in the Genus database with same CATH superfamily
3OIZA 2B78A 3VSEA 3IH8A 3D03A 1AUZA 3AGEA 5EUZA 3GHFA 1FC7A 1K32A 1HF2A 4QTPA 1FCFA 2KA5A 3GVJA 4XS5A 5EUXA 3NY7A 5EUUA 3AGDA 2AS0A 3EH7A 3C0KA 4DGHA 1WXWA 4GHNA 3IF5A 1T6RA 1V0EA 3LDFA 1N6DA 3JU4A 2RRLA 3GK7A 3QDQA 5EUWA 1FC6A 3ZTBA 3LKLA 3GMFA 3OIRA 3GVKA 3MOGA 1BUZA 1N6EA 3LLOA 4AE2A 1TIDB 3IHBA 2CWWA 4HIZA 2DXLA 3IH9A 1TH8B 2ZOAA 3K50A 3ZXNA 2KLNA 2ZO9B 1FC9A 1VC1A 1THNB 5EZBA 1BPLA 1N6FA 3DUPA 1H4ZA 3IHAA 1SBOA 3DJAA 4DGFA 5EUSA 1J7XA 3T6OA 3D3UA 3GVLA 4JC0A 1H4YA 1WXXA 1H4XA 2DXNA 1V0FA 4DMGA 2VY9A 1TILB 4L1CA 3V97A 4AEJA 3F43A 4HYLA 3DORA 3MGLA 2OASA 4L8KA 3V8VA
chains in the Genus database with same CATH topology
3OIZA 3IH8A 3IF5A 3IHBA 1T6RA 1H4YA 3IH9A 1AUZA 1H4XA 1TH8B 3AGEA 3ZXNA 2KLNA 5EUZA 1VC1A 1THNB 5EUWA 3ZTBA 5EZBA 2VY9A 1TILB 3LKLA 4QTPA 2KA5A 1H4ZA 3IHAA 1SBOA 3F43A 4XS5A 3OIRA 4HYLA 5EUXA 4DGFA 3MGLA 3NY7A 5EUSA 1BUZA 5EUUA 3AGDA 3LLOA 3T6OA 4DGHA 1TIDB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3OIZ A;  3IH8 A;  3IF5 A;  3IHB A;  1T6R A;  1H4Y A;  3IH9 A;  1AUZ A;  1H4X A;  1TH8 B;  3AGE A;  3ZXN A;  2KLN A;  5EUZ A;  1VC1 A;  1THN B;  5EUW A;  3ZTB A;  5EZB A;  2VY9 A;  1TIL B;  3LKL A;  4QTP A;  2KA5 A;  1H4Z A;  3IHA A;  1SBO A;  3F43 A;  4XS5 A;  3OIR A;  4HYL A;  5EUX A;  4DGF A;  3MGL A;  3NY7 A;  5EUS A;  1BUZ A;  5EUU A;  3AGD A;  3LLO A;  3T6O A;  4DGH A;  1TID B; 
#chains in the Genus database with same CATH topology
 3OIZ A;  2B78 A;  3VSE A;  3IH8 A;  3D03 A;  1AUZ A;  3AGE A;  5EUZ A;  3GHF A;  1FC7 A;  1K32 A;  1HF2 A;  4QTP A;  1FCF A;  2KA5 A;  3GVJ A;  4XS5 A;  5EUX A;  3NY7 A;  5EUU A;  3AGD A;  2AS0 A;  3EH7 A;  3C0K A;  4DGH A;  1WXW A;  4GHN A;  3IF5 A;  1T6R A;  1V0E A;  3LDF A;  1N6D A;  3JU4 A;  2RRL A;  3GK7 A;  3QDQ A;  5EUW A;  1FC6 A;  3ZTB A;  3LKL A;  3GMF A;  3OIR A;  3GVK A;  3MOG A;  1BUZ A;  1N6E A;  3LLO A;  4AE2 A;  1TID B;  3IHB A;  2CWW A;  4HIZ A;  2DXL A;  3IH9 A;  1TH8 B;  2ZOA A;  3K50 A;  3ZXN A;  2KLN A;  2ZO9 B;  1FC9 A;  1VC1 A;  1THN B;  5EZB A;  1BPL A;  1N6F A;  3DUP A;  1H4Z A;  3IHA A;  1SBO A;  3DJA A;  4DGF A;  5EUS A;  1J7X A;  3T6O A;  3D3U A;  3GVL A;  4JC0 A;  1H4Y A;  1WXX A;  1H4X A;  2DXN A;  1V0F A;  4DMG A;  2VY9 A;  1TIL B;  4L1C A;  3V97 A;  4AEJ A;  3F43 A;  4HYL A;  3DOR A;  3MGL A;  2OAS A;  4L8K A;  3V8V A; 
#chains in the Genus database with same CATH homology
 3OIZ A;  3IH8 A;  3IF5 A;  3IHB A;  1T6R A;  1H4Y A;  3IH9 A;  1AUZ A;  1H4X A;  1TH8 B;  3AGE A;  3ZXN A;  2KLN A;  5EUZ A;  1VC1 A;  1THN B;  5EUW A;  3ZTB A;  5EZB A;  2VY9 A;  1TIL B;  3LKL A;  4QTP A;  2KA5 A;  1H4Z A;  3IHA A;  1SBO A;  3F43 A;  4XS5 A;  3OIR A;  4HYL A;  5EUX A;  4DGF A;  3MGL A;  3NY7 A;  5EUS A;  1BUZ A;  5EUU A;  3AGD A;  3LLO A;  3T6O A;  4DGH A;  1TID B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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