1H4Y | Genus

Total Genus 43

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	43
sequence length	115
structure length	115
Chain Sequence	AFQLEMVTRETVVIRLFGELDHHAVEQIRAKISTAIFQGAVTTIIWNFERLSFMDSSGVGLVLGRMRELEAVAGRTILLNPSPTVRKVFQFSGLGPWMMDATEEEAIDRVRGIVN

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 115 atoms

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115 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Cell differentiation
source organism	Bacillus sphaericus
publication title	Structure of the Bacillus Cell Fate Determinant Spoiiaa in Phosphorylated and Unphosphorylated Forms pubmed doi rcsb
molecule keywords	ANTI-SIGMA F FACTOR ANTAGONIST
total genus	43
structure length	115
sequence length	115
chains with identical sequence	B
ec nomenclature
pdb deposition date	2001-05-16

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01740	STAS	STAS domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.750.24	Alpha Beta	2-Layer Sandwich	Transcription Regulator spoIIAA	STAS domain	1h4yA00

4DGHA 1AUZA 3T6OA 3IH9A 5EZBA 1VC1A 3LKLA 5EUUA 5EUWA 3AGEA 3OIRA 1THNB 5EUSA 3IHBA 1TILB 2KLNA 1H4YA 3IF5A 3NY7A 1TIDB 1TH8B 3F43A 3MGLA 5EUZA 2KA5A 3LLOA 1T6RA 4XS5A 4QTPA 3IHAA 3ZTBA 5EUXA 1BUZA 3ZXNA 1SBOA 4HYLA 3IH8A 1H4XA 3OIZA 3AGDA 4DGFA 2VY9A 1H4ZA
chains in the Genus database with same CATH superfamily

4DMGA 1AUZA 1FC6A 1BPLA 1FCFA 3OIRA 4L1CA 3V97A 5EUZA 1T6RA 4QTPA 3V8VA 2DXNA 1H4XA 2B78A 1N6FA 4DGFA 3EH7A 3JU4A 2VY9A 1H4YA 1VC1A 4GHNA 5EUUA 3VSEA 5EUWA 3GMFA 1THNB 1TH8B 2KA5A 3LLOA 1J7XA 1N6EA 2CWWA 3IHAA 3ZTBA 1WXXA 3AGDA 5EUXA 2RRLA 4L8KA 3T6OA 3IH9A 4AE2A 3QDQA 3GHFA 2KLNA 3IF5A 3NY7A 1TIDB 2ZOAA 1FC9A 3C0KA 3K50A 3DUPA 2AS0A 3ZXNA 1SBOA 3IH8A 3LKLA 1HF2A 1H4ZA 2DXLA 3D03A 4DGHA 1FC7A 5EZBA 3MOGA 3GVKA 3GVJA 4AEJA 3AGEA 1K32A 5EUSA 3IHBA 1N6DA 1TILB 3D3UA 3GVLA 3LDFA 1V0EA 1V0FA 3F43A 3GK7A 3MGLA 3DORA 4XS5A 4HIZA 3DJAA 2OASA 1BUZA 4HYLA 1WXWA 3OIZA 2ZO9B 4JC0A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 4DGH A;  1AUZ A;  3T6O A;  3IH9 A;  5EZB A;  1VC1 A;  3LKL A;  5EUU A;  5EUW A;  3AGE A;  3OIR A;  1THN B;  5EUS A;  3IHB A;  1TIL B;  2KLN A;  1H4Y A;  3IF5 A;  3NY7 A;  1TID B;  1TH8 B;  3F43 A;  3MGL A;  5EUZ A;  2KA5 A;  3LLO A;  1T6R A;  4XS5 A;  4QTP A;  3IHA A;  3ZTB A;  5EUX A;  1BUZ A;  3ZXN A;  1SBO A;  4HYL A;  3IH8 A;  1H4X A;  3OIZ A;  3AGD A;  4DGF A;  2VY9 A;  1H4Z A; 
#chains in the Genus database with same CATH topology
 4DMG A;  1AUZ A;  1FC6 A;  1BPL A;  1FCF A;  3OIR A;  4L1C A;  3V97 A;  5EUZ A;  1T6R A;  4QTP A;  3V8V A;  2DXN A;  1H4X A;  2B78 A;  1N6F A;  4DGF A;  3EH7 A;  3JU4 A;  2VY9 A;  1H4Y A;  1VC1 A;  4GHN A;  5EUU A;  3VSE A;  5EUW A;  3GMF A;  1THN B;  1TH8 B;  2KA5 A;  3LLO A;  1J7X A;  1N6E A;  2CWW A;  3IHA A;  3ZTB A;  1WXX A;  3AGD A;  5EUX A;  2RRL A;  4L8K A;  3T6O A;  3IH9 A;  4AE2 A;  3QDQ A;  3GHF A;  2KLN A;  3IF5 A;  3NY7 A;  1TID B;  2ZOA A;  1FC9 A;  3C0K A;  3K50 A;  3DUP A;  2AS0 A;  3ZXN A;  1SBO A;  3IH8 A;  3LKL A;  1HF2 A;  1H4Z A;  2DXL A;  3D03 A;  4DGH A;  1FC7 A;  5EZB A;  3MOG A;  3GVK A;  3GVJ A;  4AEJ A;  3AGE A;  1K32 A;  5EUS A;  3IHB A;  1N6D A;  1TIL B;  3D3U A;  3GVL A;  3LDF A;  1V0E A;  1V0F A;  3F43 A;  3GK7 A;  3MGL A;  3DOR A;  4XS5 A;  4HIZ A;  3DJA A;  2OAS A;  1BUZ A;  4HYL A;  1WXW A;  3OIZ A;  2ZO9 B;  4JC0 A; 
#chains in the Genus database with same CATH homology
 4DGH A;  1AUZ A;  3T6O A;  3IH9 A;  5EZB A;  1VC1 A;  3LKL A;  5EUU A;  5EUW A;  3AGE A;  3OIR A;  1THN B;  5EUS A;  3IHB A;  1TIL B;  2KLN A;  1H4Y A;  3IF5 A;  3NY7 A;  1TID B;  1TH8 B;  3F43 A;  3MGL A;  5EUZ A;  2KA5 A;  3LLO A;  1T6R A;  4XS5 A;  4QTP A;  3IHA A;  3ZTB A;  5EUX A;  1BUZ A;  3ZXN A;  1SBO A;  4HYL A;  3IH8 A;  1H4X A;  3OIZ A;  3AGD A;  4DGF A;  2VY9 A;  1H4Z A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1H4YA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations