1H4Z | Genus

Total Genus 39

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	39
sequence length	113
structure length	110
Chain Sequence	AFQLEMVTRETVVIRLFGELDHHAVEQIRAKISTAIFQGAVTTIIWNFERLSFMDSSGVGLVLGRMRELEAVAGRTILLNPSPTMRKVFQFGPWMMDATEEEAIDRVRGI

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Cell differentiation
source organism	Bacillus sphaericus
publication title	Structure of the Bacillus Cell Fate Determinant Spoiiaa in Phosphorylated and Unphosphorylated Forms pubmed doi rcsb
molecule keywords	ANTI-SIGMA F FACTOR ANTAGONIST
total genus	39
structure length	110
sequence length	113
ec nomenclature
pdb deposition date	2001-05-16

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01740	STAS	STAS domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.750.24	Alpha Beta	2-Layer Sandwich	Transcription Regulator spoIIAA	STAS domain	1h4zA00

3IF5A 1H4XA 2KLNA 1H4YA 2KA5A 3AGEA 1SBOA 3MGLA 3OIZA 3LKLA 1T6RA 4XS5A 5EUZA 3T6OA 5EUXA 3ZXNA 1THNB 1VC1A 4DGFA 1AUZA 5EUUA 1H4ZA 3IHAA 3NY7A 3LLOA 1TH8B 3ZTBA 3IHBA 3OIRA 1TIDB 4DGHA 5EUSA 3AGDA 5EZBA 4QTPA 1TILB 2VY9A 3F43A 4HYLA 1BUZA 3IH9A 3IH8A 5EUWA
chains in the Genus database with same CATH superfamily

3IF5A 1J7XA 1FC6A 2KA5A 3AGEA 1SBOA 3OIZA 1WXWA 2AS0A 5EUZA 2DXLA 5EUXA 3JU4A 1TH8B 3OIRA 1HF2A 4DGHA 1BPLA 5EZBA 3F43A 3GK7A 3GVJA 5EUWA 4L8KA 2DXNA 1H4XA 2B78A 2KLNA 3EH7A 3D03A 3QDQA 4JC0A 3V97A 1VC1A 4DGFA 1AUZA 4HIZA 4DMGA 3NY7A 3MOGA 4AE2A 3LLOA 3IHBA 5EUSA 3DUPA 1TILB 1BUZA 3IH8A 3VSEA 1H4YA 1FC7A 3GVLA 4GHNA 4L1CA 4XS5A 1N6DA 1V0FA 1WXXA 3D3UA 1THNB 1N6FA 1K32A 1H4ZA 2ZO9B 1FCFA 1N6EA 3AGDA 3K50A 2CWWA 3C0KA 4HYLA 3IH9A 3DORA 1V0EA 2OASA 3MGLA 3LDFA 3V8VA 3LKLA 1T6RA 3T6OA 3ZXNA 2RRLA 5EUUA 3GHFA 3IHAA 4AEJA 3ZTBA 1FC9A 1TIDB 3GVKA 2ZOAA 4QTPA 2VY9A 3DJAA 3GMFA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3IF5 A;  1H4X A;  2KLN A;  1H4Y A;  2KA5 A;  3AGE A;  1SBO A;  3MGL A;  3OIZ A;  3LKL A;  1T6R A;  4XS5 A;  5EUZ A;  3T6O A;  5EUX A;  3ZXN A;  1THN B;  1VC1 A;  4DGF A;  1AUZ A;  5EUU A;  1H4Z A;  3IHA A;  3NY7 A;  3LLO A;  1TH8 B;  3ZTB A;  3IHB A;  3OIR A;  1TID B;  4DGH A;  5EUS A;  3AGD A;  5EZB A;  4QTP A;  1TIL B;  2VY9 A;  3F43 A;  4HYL A;  1BUZ A;  3IH9 A;  3IH8 A;  5EUW A; 
#chains in the Genus database with same CATH topology
 3IF5 A;  1J7X A;  1FC6 A;  2KA5 A;  3AGE A;  1SBO A;  3OIZ A;  1WXW A;  2AS0 A;  5EUZ A;  2DXL A;  5EUX A;  3JU4 A;  1TH8 B;  3OIR A;  1HF2 A;  4DGH A;  1BPL A;  5EZB A;  3F43 A;  3GK7 A;  3GVJ A;  5EUW A;  4L8K A;  2DXN A;  1H4X A;  2B78 A;  2KLN A;  3EH7 A;  3D03 A;  3QDQ A;  4JC0 A;  3V97 A;  1VC1 A;  4DGF A;  1AUZ A;  4HIZ A;  4DMG A;  3NY7 A;  3MOG A;  4AE2 A;  3LLO A;  3IHB A;  5EUS A;  3DUP A;  1TIL B;  1BUZ A;  3IH8 A;  3VSE A;  1H4Y A;  1FC7 A;  3GVL A;  4GHN A;  4L1C A;  4XS5 A;  1N6D A;  1V0F A;  1WXX A;  3D3U A;  1THN B;  1N6F A;  1K32 A;  1H4Z A;  2ZO9 B;  1FCF A;  1N6E A;  3AGD A;  3K50 A;  2CWW A;  3C0K A;  4HYL A;  3IH9 A;  3DOR A;  1V0E A;  2OAS A;  3MGL A;  3LDF A;  3V8V A;  3LKL A;  1T6R A;  3T6O A;  3ZXN A;  2RRL A;  5EUU A;  3GHF A;  3IHA A;  4AEJ A;  3ZTB A;  1FC9 A;  1TID B;  3GVK A;  2ZOA A;  4QTP A;  2VY9 A;  3DJA A;  3GMF A; 
#chains in the Genus database with same CATH homology
 3IF5 A;  1H4X A;  2KLN A;  1H4Y A;  2KA5 A;  3AGE A;  1SBO A;  3MGL A;  3OIZ A;  3LKL A;  1T6R A;  4XS5 A;  5EUZ A;  3T6O A;  5EUX A;  3ZXN A;  1THN B;  1VC1 A;  4DGF A;  1AUZ A;  5EUU A;  1H4Z A;  3IHA A;  3NY7 A;  3LLO A;  1TH8 B;  3ZTB A;  3IHB A;  3OIR A;  1TID B;  4DGH A;  5EUS A;  3AGD A;  5EZB A;  4QTP A;  1TIL B;  2VY9 A;  3F43 A;  4HYL A;  1BUZ A;  3IH9 A;  3IH8 A;  5EUW A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1H4ZA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations