1SBOA

Solution structure of putative anti sigma factor antagonist from thermotoga maritima (tm1442)
Total Genus 31

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
31
sequence length
110
structure length
110
Chain Sequence
MNNLKLDIVEQDDKAIVRVQGDIDAYNSSELKEQLRNFISTTSKKKIVLDLSSVSYMDSAGLGTLVVILKDAKINGKEFILSSLKESISRILKLTHLDKIFKITDTVEEA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
S1 (5-6)S3 (14-20)EMPTYS2 (9-10)TIV1 (11-14)S4 (46-50)3H2 (107-109)AH1 (26-41)TVIII1 (42-45)AH2 (59-75)S5 (78-82)TI1 (51-54)3H1 (98-100)AH3 (86-95)S6 (103-104)Updating...
connected with : NaN
molecule tags Structural genomics, unknown function
source organism Thermotoga maritima
publication title Solution structures of the putative anti-sigma-factor antagonist TM1442 from Thermotoga maritima in the free and phosphorylated states.
pubmed doi rcsb
molecule keywords Putative anti-sigma factor antagonist TM1442
total genus 31
structure length 110
sequence length 110
ec nomenclature
pdb deposition date 2004-02-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01740 STAS STAS domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.750.24 Alpha Beta 2-Layer Sandwich Transcription Regulator spoIIAA STAS domain 1sboA00
1AUZA 3F43A 3LKLA 4XS5A 3NY7A 3AGDA 3IH9A 1BUZA 5EUXA 3OIRA 5EUZA 1T6RA 1TIDB 4HYLA 1VC1A 2KLNA 4DGHA 4QTPA 3IHAA 5EUUA 2VY9A 1SBOA 3OIZA 2KA5A 3IHBA 4DGFA 3MGLA 5EUWA 5EUSA 3IF5A 3LLOA 3T6OA 3ZTBA 3AGEA 3IH8A 1H4YA 1H4ZA 1THNB 1H4XA 5EZBA 3ZXNA 1TH8B 1TILB
chains in the Genus database with same CATH superfamily
1AUZA 1FC7A 3LKLA 4XS5A 3NY7A 1BPLA 4DGHA 5EUUA 3MGLA 4GHNA 3DORA 2OASA 1WXWA 1H4YA 3IH8A 1N6DA 2DXLA 3ZXNA 3F43A 3DUPA 3IH9A 2DXNA 5EUXA 3OIRA 1T6RA 1WXXA 1FC9A 3GVKA 4HIZA 5EUWA 3IF5A 3ZTBA 3GVLA 3D03A 3D3UA 2CWWA 1THNB 3GHFA 5EZBA 3GVJA 3V8VA 3LDFA 3AGDA 1FCFA 5EUZA 3GK7A 1TIDB 4HYLA 1VC1A 4QTPA 2B78A 3IHAA 2VY9A 4DGFA 2KA5A 1K32A 5EUSA 3K50A 3AGEA 1H4ZA 1J7XA 2ZOAA 2AS0A 3EH7A 3QDQA 2RRLA 3VSEA 1FC6A 4DMGA 3DJAA 3V97A 4AE2A 1BUZA 3JU4A 1HF2A 1V0FA 1V0EA 2KLNA 4JC0A 2ZO9B 4L8KA 1SBOA 3OIZA 3IHBA 1N6EA 3C0KA 3LLOA 3T6OA 4L1CA 1N6FA 1H4XA 3GMFA 1TH8B 3MOGA 1TILB 4AEJA
chains in the Genus database with same CATH topology
1AUZA 3F43A 3LKLA 4XS5A 3NY7A 3AGDA 3IH9A 1BUZA 5EUXA 3OIRA 5EUZA 1T6RA 1TIDB 4HYLA 1VC1A 2KLNA 4DGHA 4QTPA 3IHAA 5EUUA 2VY9A 1SBOA 3OIZA 2KA5A 3IHBA 4DGFA 3MGLA 5EUWA 5EUSA 3IF5A 3LLOA 3T6OA 3ZTBA 3AGEA 3IH8A 1H4YA 1H4ZA 1THNB 1H4XA 5EZBA 3ZXNA 1TH8B 1TILB
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 1AUZ A;  3F43 A;  3LKL A;  4XS5 A;  3NY7 A;  3AGD A;  3IH9 A;  1BUZ A;  5EUX A;  3OIR A;  5EUZ A;  1T6R A;  1TID B;  4HYL A;  1VC1 A;  2KLN A;  4DGH A;  4QTP A;  3IHA A;  5EUU A;  2VY9 A;  1SBO A;  3OIZ A;  2KA5 A;  3IHB A;  4DGF A;  3MGL A;  5EUW A;  5EUS A;  3IF5 A;  3LLO A;  3T6O A;  3ZTB A;  3AGE A;  3IH8 A;  1H4Y A;  1H4Z A;  1THN B;  1H4X A;  5EZB A;  3ZXN A;  1TH8 B;  1TIL B; 
#chains in the Genus database with same CATH topology
 1AUZ A;  1FC7 A;  3LKL A;  4XS5 A;  3NY7 A;  1BPL A;  4DGH A;  5EUU A;  3MGL A;  4GHN A;  3DOR A;  2OAS A;  1WXW A;  1H4Y A;  3IH8 A;  1N6D A;  2DXL A;  3ZXN A;  3F43 A;  3DUP A;  3IH9 A;  2DXN A;  5EUX A;  3OIR A;  1T6R A;  1WXX A;  1FC9 A;  3GVK A;  4HIZ A;  5EUW A;  3IF5 A;  3ZTB A;  3GVL A;  3D03 A;  3D3U A;  2CWW A;  1THN B;  3GHF A;  5EZB A;  3GVJ A;  3V8V A;  3LDF A;  3AGD A;  1FCF A;  5EUZ A;  3GK7 A;  1TID B;  4HYL A;  1VC1 A;  4QTP A;  2B78 A;  3IHA A;  2VY9 A;  4DGF A;  2KA5 A;  1K32 A;  5EUS A;  3K50 A;  3AGE A;  1H4Z A;  1J7X A;  2ZOA A;  2AS0 A;  3EH7 A;  3QDQ A;  2RRL A;  3VSE A;  1FC6 A;  4DMG A;  3DJA A;  3V97 A;  4AE2 A;  1BUZ A;  3JU4 A;  1HF2 A;  1V0F A;  1V0E A;  2KLN A;  4JC0 A;  2ZO9 B;  4L8K A;  1SBO A;  3OIZ A;  3IHB A;  1N6E A;  3C0K A;  3LLO A;  3T6O A;  4L1C A;  1N6F A;  1H4X A;  3GMF A;  1TH8 B;  3MOG A;  1TIL B;  4AEJ A; 
#chains in the Genus database with same CATH homology
 1AUZ A;  3F43 A;  3LKL A;  4XS5 A;  3NY7 A;  3AGD A;  3IH9 A;  1BUZ A;  5EUX A;  3OIR A;  5EUZ A;  1T6R A;  1TID B;  4HYL A;  1VC1 A;  2KLN A;  4DGH A;  4QTP A;  3IHA A;  5EUU A;  2VY9 A;  1SBO A;  3OIZ A;  2KA5 A;  3IHB A;  4DGF A;  3MGL A;  5EUW A;  5EUS A;  3IF5 A;  3LLO A;  3T6O A;  3ZTB A;  3AGE A;  3IH8 A;  1H4Y A;  1H4Z A;  1THN B;  1H4X A;  5EZB A;  3ZXN A;  1TH8 B;  1TIL B;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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