1T6RA

Solution structure of tm1442, a putative anti sigma factor antagonist in phosphorylated state
Total Genus 28
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
28
sequence length
110
structure length
109
Chain Sequence
MNNLKLDIVEQDDKAIVRVQGDIDAYNSSELKEQLRNFISTTSKKKIVLDLSSVSYMDAGLGTLVVILKDAKINGKEFILSSLKESISRILKLTHLDKIFKITDTVEEA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Solution structures of the putative anti-sigma-factor antagonist TM1442 from Thermotoga maritima in the free and phosphorylated states.
pubmed doi rcsb
molecule tags Structural genomics, unknown function
source organism Thermotoga maritima
molecule keywords Putative anti-sigma factor antagonist TM1442
total genus 28
structure length 109
sequence length 110
ec nomenclature
pdb deposition date 2004-05-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01740 STAS STAS domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.750.24 Alpha Beta 2-Layer Sandwich Transcription Regulator spoIIAA STAS domain 1t6rA00
3LKLA 3IHBA 5EUZA 3IF5A 4XS5A 5EZBA 1TIDB 2VY9A 2KLNA 3ZTBA 1BUZA 1VC1A 1SBOA 1AUZA 1THNB 3NY7A 3OIRA 4QTPA 3IHAA 3AGDA 1H4YA 4HYLA 1T6RA 1H4ZA 5EUSA 4DGHA 1H4XA 3LLOA 3IH8A 1TILB 4DGFA 3ZXNA 5EUUA 5EUXA 3IH9A 3OIZA 5EUWA 3T6OA 2KA5A 3AGEA 3MGLA 3F43A 1TH8B
chains in the Genus database with same CATH superfamily
3LDFA 1FC9A 5EUZA 3IF5A 1K32A 1TIDB 1WXXA 2VY9A 3GVKA 1SBOA 3EH7A 3NY7A 3IHAA 3VSEA 2DXNA 3DJAA 1T6RA 3LLOA 4DGFA 3ZXNA 3C0KA 5EUUA 3IH9A 3OIZA 4AEJA 1FC7A 1V0EA 2RRLA 3AGEA 3GHFA 3GVLA 2ZOAA 2AS0A 2KLNA 1V0FA 3JU4A 4L1CA 2OASA 3DORA 1H4ZA 1H4XA 1N6EA 3IH8A 2CWWA 1HF2A 2KA5A 2ZO9B 1WXWA 3MGLA 3K50A 4XS5A 4L8KA 5EZBA 1N6FA 1BUZA 1N6DA 3GVJA 3D03A 3GMFA 3OIRA 4AE2A 3D3UA 5EUSA 5EUXA 3T6OA 1FC6A 4DMGA 3MOGA 4GHNA 3V97A 3F43A 1TH8B 1J7XA 3LKLA 1BPLA 3IHBA 3V8VA 3GK7A 2B78A 3ZTBA 1VC1A 1AUZA 2DXLA 1THNB 4QTPA 3AGDA 1FCFA 1H4YA 4HYLA 4DGHA 1TILB 3QDQA 5EUWA 3DUPA 4HIZA 4JC0A
chains in the Genus database with same CATH topology
3LKLA 3IHBA 5EUZA 3IF5A 4XS5A 5EZBA 1TIDB 2VY9A 2KLNA 3ZTBA 1BUZA 1VC1A 1SBOA 1AUZA 1THNB 3NY7A 3OIRA 4QTPA 3IHAA 3AGDA 1H4YA 4HYLA 1T6RA 1H4ZA 5EUSA 4DGHA 1H4XA 3LLOA 3IH8A 1TILB 4DGFA 3ZXNA 5EUUA 5EUXA 3IH9A 3OIZA 5EUWA 3T6OA 2KA5A 3AGEA 3MGLA 3F43A 1TH8B
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3LKL A;  3IHB A;  5EUZ A;  3IF5 A;  4XS5 A;  5EZB A;  1TID B;  2VY9 A;  2KLN A;  3ZTB A;  1BUZ A;  1VC1 A;  1SBO A;  1AUZ A;  1THN B;  3NY7 A;  3OIR A;  4QTP A;  3IHA A;  3AGD A;  1H4Y A;  4HYL A;  1T6R A;  1H4Z A;  5EUS A;  4DGH A;  1H4X A;  3LLO A;  3IH8 A;  1TIL B;  4DGF A;  3ZXN A;  5EUU A;  5EUX A;  3IH9 A;  3OIZ A;  5EUW A;  3T6O A;  2KA5 A;  3AGE A;  3MGL A;  3F43 A;  1TH8 B; 
#chains in the Genus database with same CATH topology
 3LDF A;  1FC9 A;  5EUZ A;  3IF5 A;  1K32 A;  1TID B;  1WXX A;  2VY9 A;  3GVK A;  1SBO A;  3EH7 A;  3NY7 A;  3IHA A;  3VSE A;  2DXN A;  3DJA A;  1T6R A;  3LLO A;  4DGF A;  3ZXN A;  3C0K A;  5EUU A;  3IH9 A;  3OIZ A;  4AEJ A;  1FC7 A;  1V0E A;  2RRL A;  3AGE A;  3GHF A;  3GVL A;  2ZOA A;  2AS0 A;  2KLN A;  1V0F A;  3JU4 A;  4L1C A;  2OAS A;  3DOR A;  1H4Z A;  1H4X A;  1N6E A;  3IH8 A;  2CWW A;  1HF2 A;  2KA5 A;  2ZO9 B;  1WXW A;  3MGL A;  3K50 A;  4XS5 A;  4L8K A;  5EZB A;  1N6F A;  1BUZ A;  1N6D A;  3GVJ A;  3D03 A;  3GMF A;  3OIR A;  4AE2 A;  3D3U A;  5EUS A;  5EUX A;  3T6O A;  1FC6 A;  4DMG A;  3MOG A;  4GHN A;  3V97 A;  3F43 A;  1TH8 B;  1J7X A;  3LKL A;  1BPL A;  3IHB A;  3V8V A;  3GK7 A;  2B78 A;  3ZTB A;  1VC1 A;  1AUZ A;  2DXL A;  1THN B;  4QTP A;  3AGD A;  1FCF A;  1H4Y A;  4HYL A;  4DGH A;  1TIL B;  3QDQ A;  5EUW A;  3DUP A;  4HIZ A;  4JC0 A; 
#chains in the Genus database with same CATH homology
 3LKL A;  3IHB A;  5EUZ A;  3IF5 A;  4XS5 A;  5EZB A;  1TID B;  2VY9 A;  2KLN A;  3ZTB A;  1BUZ A;  1VC1 A;  1SBO A;  1AUZ A;  1THN B;  3NY7 A;  3OIR A;  4QTP A;  3IHA A;  3AGD A;  1H4Y A;  4HYL A;  1T6R A;  1H4Z A;  5EUS A;  4DGH A;  1H4X A;  3LLO A;  3IH8 A;  1TIL B;  4DGF A;  3ZXN A;  5EUU A;  5EUX A;  3IH9 A;  3OIZ A;  5EUW A;  3T6O A;  2KA5 A;  3AGE A;  3MGL A;  3F43 A;  1TH8 B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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