1T6RA

Solution structure of tm1442, a putative anti sigma factor antagonist in phosphorylated state
Total Genus 28
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
28
sequence length
110
structure length
109
Chain Sequence
MNNLKLDIVEQDDKAIVRVQGDIDAYNSSELKEQLRNFISTTSKKKIVLDLSSVSYMDAGLGTLVVILKDAKINGKEFILSSLKESISRILKLTHLDKIFKITDTVEEA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Solution structures of the putative anti-sigma-factor antagonist TM1442 from Thermotoga maritima in the free and phosphorylated states.
pubmed doi rcsb
molecule tags Structural genomics, unknown function
source organism Thermotoga maritima
molecule keywords Putative anti-sigma factor antagonist TM1442
total genus 28
structure length 109
sequence length 110
ec nomenclature
pdb deposition date 2004-05-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01740 STAS STAS domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.750.24 Alpha Beta 2-Layer Sandwich Transcription Regulator spoIIAA STAS domain 1t6rA00
1T6RA 1TH8B 1BUZA 3IF5A 3LLOA 1AUZA 2KLNA 2KA5A 3F43A 4XS5A 3OIRA 5EUWA 4QTPA 4DGHA 3T6OA 3AGEA 4HYLA 3IHBA 5EUZA 3MGLA 1TIDB 3ZXNA 3AGDA 5EUUA 3OIZA 3NY7A 5EZBA 4DGFA 1SBOA 5EUXA 1THNB 1H4XA 3LKLA 2VY9A 1H4YA 3ZTBA 1TILB 1H4ZA 3IH8A 3IHAA 1VC1A 3IH9A 5EUSA
chains in the Genus database with same CATH superfamily
3D03A 4GHNA 3D3UA 3LLOA 1AUZA 3JU4A 4DGHA 1FCFA 1J7XA 3AGEA 1N6EA 1N6FA 5EUZA 4L1CA 2ZOAA 3AGDA 3OIZA 4DGFA 3GMFA 3LKLA 1H4ZA 3VSEA 4L8KA 3GVJA 3IH9A 4JC0A 1FC6A 1TH8B 3V97A 3GVLA 3OIRA 5EUWA 4HIZA 3QDQA 4DMGA 3ZXNA 2OASA 3EH7A 3V8VA 2CWWA 3GK7A 1FC9A 3NY7A 1SBOA 1THNB 1TILB 3IH8A 2AS0A 1HF2A 1VC1A 1WXXA 5EUSA 3IF5A 1K32A 1V0EA 3GHFA 2KA5A 2DXNA 3F43A 4QTPA 1N6DA 3MOGA 1WXWA 4AE2A 5EZBA 5EUXA 1H4YA 3GVKA 3LDFA 3ZTBA 2B78A 3IHAA 1FC7A 1T6RA 1BUZA 3DORA 1BPLA 2KLNA 4XS5A 4AEJA 3T6OA 4HYLA 3DJAA 2DXLA 3IHBA 3K50A 3MGLA 1TIDB 3C0KA 5EUUA 1V0FA 1H4XA 2VY9A 3DUPA 2RRLA 2ZO9B
chains in the Genus database with same CATH topology
1T6RA 1TH8B 1BUZA 3IF5A 3LLOA 1AUZA 2KLNA 2KA5A 3F43A 4XS5A 3OIRA 5EUWA 4QTPA 4DGHA 3T6OA 3AGEA 4HYLA 3IHBA 5EUZA 3MGLA 1TIDB 3ZXNA 3AGDA 5EUUA 3OIZA 3NY7A 5EZBA 4DGFA 1SBOA 5EUXA 1THNB 1H4XA 3LKLA 2VY9A 1H4YA 3ZTBA 1TILB 1H4ZA 3IH8A 3IHAA 1VC1A 3IH9A 5EUSA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1T6R A;  1TH8 B;  1BUZ A;  3IF5 A;  3LLO A;  1AUZ A;  2KLN A;  2KA5 A;  3F43 A;  4XS5 A;  3OIR A;  5EUW A;  4QTP A;  4DGH A;  3T6O A;  3AGE A;  4HYL A;  3IHB A;  5EUZ A;  3MGL A;  1TID B;  3ZXN A;  3AGD A;  5EUU A;  3OIZ A;  3NY7 A;  5EZB A;  4DGF A;  1SBO A;  5EUX A;  1THN B;  1H4X A;  3LKL A;  2VY9 A;  1H4Y A;  3ZTB A;  1TIL B;  1H4Z A;  3IH8 A;  3IHA A;  1VC1 A;  3IH9 A;  5EUS A; 
#chains in the Genus database with same CATH topology
 3D03 A;  4GHN A;  3D3U A;  3LLO A;  1AUZ A;  3JU4 A;  4DGH A;  1FCF A;  1J7X A;  3AGE A;  1N6E A;  1N6F A;  5EUZ A;  4L1C A;  2ZOA A;  3AGD A;  3OIZ A;  4DGF A;  3GMF A;  3LKL A;  1H4Z A;  3VSE A;  4L8K A;  3GVJ A;  3IH9 A;  4JC0 A;  1FC6 A;  1TH8 B;  3V97 A;  3GVL A;  3OIR A;  5EUW A;  4HIZ A;  3QDQ A;  4DMG A;  3ZXN A;  2OAS A;  3EH7 A;  3V8V A;  2CWW A;  3GK7 A;  1FC9 A;  3NY7 A;  1SBO A;  1THN B;  1TIL B;  3IH8 A;  2AS0 A;  1HF2 A;  1VC1 A;  1WXX A;  5EUS A;  3IF5 A;  1K32 A;  1V0E A;  3GHF A;  2KA5 A;  2DXN A;  3F43 A;  4QTP A;  1N6D A;  3MOG A;  1WXW A;  4AE2 A;  5EZB A;  5EUX A;  1H4Y A;  3GVK A;  3LDF A;  3ZTB A;  2B78 A;  3IHA A;  1FC7 A;  1T6R A;  1BUZ A;  3DOR A;  1BPL A;  2KLN A;  4XS5 A;  4AEJ A;  3T6O A;  4HYL A;  3DJA A;  2DXL A;  3IHB A;  3K50 A;  3MGL A;  1TID B;  3C0K A;  5EUU A;  1V0F A;  1H4X A;  2VY9 A;  3DUP A;  2RRL A;  2ZO9 B; 
#chains in the Genus database with same CATH homology
 1T6R A;  1TH8 B;  1BUZ A;  3IF5 A;  3LLO A;  1AUZ A;  2KLN A;  2KA5 A;  3F43 A;  4XS5 A;  3OIR A;  5EUW A;  4QTP A;  4DGH A;  3T6O A;  3AGE A;  4HYL A;  3IHB A;  5EUZ A;  3MGL A;  1TID B;  3ZXN A;  3AGD A;  5EUU A;  3OIZ A;  3NY7 A;  5EZB A;  4DGF A;  1SBO A;  5EUX A;  1THN B;  1H4X A;  3LKL A;  2VY9 A;  1H4Y A;  3ZTB A;  1TIL B;  1H4Z A;  3IH8 A;  3IHA A;  1VC1 A;  3IH9 A;  5EUS A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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