1T6R | Genus

Total Genus 28

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	28
sequence length	110
structure length	109
Chain Sequence	MNNLKLDIVEQDDKAIVRVQGDIDAYNSSELKEQLRNFISTTSKKKIVLDLSSVSYMDAGLGTLVVILKDAKINGKEFILSSLKESISRILKLTHLDKIFKITDTVEEA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 109 atoms

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109 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Structural genomics, unknown function
source organism	Thermotoga maritima
publication title	Solution structures of the putative anti-sigma-factor antagonist TM1442 from Thermotoga maritima in the free and phosphorylated states. pubmed doi rcsb
molecule keywords	Putative anti-sigma factor antagonist TM1442
total genus	28
structure length	109
sequence length	110
ec nomenclature
pdb deposition date	2004-05-07

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01740	STAS	STAS domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.750.24	Alpha Beta	2-Layer Sandwich	Transcription Regulator spoIIAA	STAS domain	1t6rA00

3AGEA 3OIZA 3AGDA 1H4YA 5EUUA 1TILB 1SBOA 1THNB 3F43A 1TIDB 3T6OA 1H4XA 3IH8A 3LKLA 1TH8B 3LLOA 4DGHA 5EUXA 1H4ZA 5EUZA 4DGFA 3MGLA 2KLNA 3NY7A 4QTPA 1T6RA 5EZBA 1AUZA 5EUSA 5EUWA 2KA5A 3IHBA 1VC1A 3IH9A 3OIRA 4XS5A 3ZXNA 2VY9A 3IF5A 3IHAA 4HYLA 1BUZA 3ZTBA
chains in the Genus database with same CATH superfamily

3AGEA 5EUUA 1TILB 3D03A 2DXLA 1N6FA 3V8VA 1THNB 3F43A 3T6OA 3IH8A 3GVLA 4L8KA 1TH8B 3GVKA 3JU4A 2ZOAA 3MGLA 4L1CA 4QTPA 1WXXA 1WXWA 5EUSA 1K32A 3QDQA 1VC1A 3IH9A 3OIRA 4XS5A 2VY9A 2RRLA 3C0KA 2CWWA 3LDFA 4HYLA 3ZTBA 1HF2A 1TIDB 1H4XA 4GHNA 5EUZA 1T6RA 1J7XA 4AEJA 2DXNA 3GMFA 2KA5A 3IHBA 1V0EA 2OASA 3D3UA 3AGDA 1H4YA 3GHFA 1SBOA 2B78A 3V97A 1N6DA 3LKLA 4DGHA 5EUXA 3GK7A 3DORA 4DGFA 2KLNA 3MOGA 1AUZA 4JC0A 3ZXNA 3GVJA 3VSEA 3K50A 2ZO9B 3OIZA 4DMGA 2AS0A 1V0FA 4HIZA 1FC9A 3LLOA 1H4ZA 1FC6A 3EH7A 3NY7A 1BPLA 5EZBA 1FC7A 5EUWA 1FCFA 3IF5A 1N6EA 3DJAA 4AE2A 3IHAA 1BUZA 3DUPA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3AGE A;  3OIZ A;  3AGD A;  1H4Y A;  5EUU A;  1TIL B;  1SBO A;  1THN B;  3F43 A;  1TID B;  3T6O A;  1H4X A;  3IH8 A;  3LKL A;  1TH8 B;  3LLO A;  4DGH A;  5EUX A;  1H4Z A;  5EUZ A;  4DGF A;  3MGL A;  2KLN A;  3NY7 A;  4QTP A;  1T6R A;  5EZB A;  1AUZ A;  5EUS A;  5EUW A;  2KA5 A;  3IHB A;  1VC1 A;  3IH9 A;  3OIR A;  4XS5 A;  3ZXN A;  2VY9 A;  3IF5 A;  3IHA A;  4HYL A;  1BUZ A;  3ZTB A; 
#chains in the Genus database with same CATH topology
 3AGE A;  5EUU A;  1TIL B;  3D03 A;  2DXL A;  1N6F A;  3V8V A;  1THN B;  3F43 A;  3T6O A;  3IH8 A;  3GVL A;  4L8K A;  1TH8 B;  3GVK A;  3JU4 A;  2ZOA A;  3MGL A;  4L1C A;  4QTP A;  1WXX A;  1WXW A;  5EUS A;  1K32 A;  3QDQ A;  1VC1 A;  3IH9 A;  3OIR A;  4XS5 A;  2VY9 A;  2RRL A;  3C0K A;  2CWW A;  3LDF A;  4HYL A;  3ZTB A;  1HF2 A;  1TID B;  1H4X A;  4GHN A;  5EUZ A;  1T6R A;  1J7X A;  4AEJ A;  2DXN A;  3GMF A;  2KA5 A;  3IHB A;  1V0E A;  2OAS A;  3D3U A;  3AGD A;  1H4Y A;  3GHF A;  1SBO A;  2B78 A;  3V97 A;  1N6D A;  3LKL A;  4DGH A;  5EUX A;  3GK7 A;  3DOR A;  4DGF A;  2KLN A;  3MOG A;  1AUZ A;  4JC0 A;  3ZXN A;  3GVJ A;  3VSE A;  3K50 A;  2ZO9 B;  3OIZ A;  4DMG A;  2AS0 A;  1V0F A;  4HIZ A;  1FC9 A;  3LLO A;  1H4Z A;  1FC6 A;  3EH7 A;  3NY7 A;  1BPL A;  5EZB A;  1FC7 A;  5EUW A;  1FCF A;  3IF5 A;  1N6E A;  3DJA A;  4AE2 A;  3IHA A;  1BUZ A;  3DUP A; 
#chains in the Genus database with same CATH homology
 3AGE A;  3OIZ A;  3AGD A;  1H4Y A;  5EUU A;  1TIL B;  1SBO A;  1THN B;  3F43 A;  1TID B;  3T6O A;  1H4X A;  3IH8 A;  3LKL A;  1TH8 B;  3LLO A;  4DGH A;  5EUX A;  1H4Z A;  5EUZ A;  4DGF A;  3MGL A;  2KLN A;  3NY7 A;  4QTP A;  1T6R A;  5EZB A;  1AUZ A;  5EUS A;  5EUW A;  2KA5 A;  3IHB A;  1VC1 A;  3IH9 A;  3OIR A;  4XS5 A;  3ZXN A;  2VY9 A;  3IF5 A;  3IHA A;  4HYL A;  1BUZ A;  3ZTB A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1T6RA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations