1TH8 | Genus

Total Genus 40

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	40
sequence length	115
structure length	115
Chain Sequence	SLAIDLEVKQDVLIVRLSGELDHHTAEELREQVTDVLENRAIRHIVLNLGQLTFMDSSGLGVILGRYKQIKNVGGQMVVCAVSPAVKRLFDMSGLFKIIRVEADEQFALQALGVA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transcription
source organism	Geobacillus stearothermophilus
publication title	Crystal Structures of the ADP and ATP Bound Forms of the Bacillus Anti-sigma Factor SpoIIAB in Complex with the Anti-anti-sigma SpoIIAA. pubmed doi rcsb
molecule keywords	Anti-sigma F factor
total genus	40
structure length	115
sequence length	115
ec nomenclature
pdb deposition date	2004-06-01

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
B	PF01740	STAS	STAS domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.750.24	Alpha Beta	2-Layer Sandwich	Transcription Regulator spoIIAA	STAS domain	1th8B00

5EUUA 3F43A 3MGLA 1BUZA 1TIDB 3NY7A 5EUXA 1H4YA 3IH8A 5EUSA 1H4XA 1H4ZA 1THNB 4XS5A 3IHAA 1AUZA 4QTPA 2KA5A 3IHBA 1T6RA 2VY9A 3ZXNA 2KLNA 1TH8B 3LLOA 3OIZA 3IF5A 3AGDA 1TILB 3AGEA 1SBOA 3OIRA 5EZBA 3ZTBA 3IH9A 3T6OA 3LKLA 4DGHA 5EUWA 5EUZA 1VC1A 4DGFA 4HYLA
chains in the Genus database with same CATH superfamily

3F43A 3DORA 2CWWA 3NY7A 3DJAA 2OASA 1WXXA 5EUSA 3V8VA 4AEJA 4XS5A 4AE2A 3VSEA 2VY9A 3D3UA 2KLNA 3OIZA 3AGDA 1FC9A 1WXWA 3C0KA 4DGHA 5EUZA 1VC1A 1H4XA 5EZBA 1AUZA 3GVJA 1FCFA 3GK7A 5EUXA 3DUPA 3IH8A 1K32A 2B78A 1THNB 2DXNA 3QDQA 3D03A 3V97A 1T6RA 3ZXNA 3LDFA 1SBOA 2RRLA 3T6OA 4GHNA 4L1CA 3LKLA 2AS0A 5EUWA 3GHFA 3MGLA 1TIDB 3GVLA 1V0EA 1HF2A 3IHAA 4QTPA 2KA5A 3IHBA 3EH7A 1N6EA 3LLOA 3MOGA 3IF5A 2ZOAA 1TILB 3AGEA 3OIRA 3IH9A 1FC6A 1N6FA 4DGFA 5EUUA 3GVKA 1BUZA 4HIZA 1H4YA 1N6DA 3JU4A 1BPLA 1H4ZA 4DMGA 2DXLA 3K50A 1V0FA 4L8KA 1TH8B 1FC7A 4JC0A 3ZTBA 1J7XA 3GMFA 2ZO9B 4HYLA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 5EUU A;  3F43 A;  3MGL A;  1BUZ A;  1TID B;  3NY7 A;  5EUX A;  1H4Y A;  3IH8 A;  5EUS A;  1H4X A;  1H4Z A;  1THN B;  4XS5 A;  3IHA A;  1AUZ A;  4QTP A;  2KA5 A;  3IHB A;  1T6R A;  2VY9 A;  3ZXN A;  2KLN A;  1TH8 B;  3LLO A;  3OIZ A;  3IF5 A;  3AGD A;  1TIL B;  3AGE A;  1SBO A;  3OIR A;  5EZB A;  3ZTB A;  3IH9 A;  3T6O A;  3LKL A;  4DGH A;  5EUW A;  5EUZ A;  1VC1 A;  4DGF A;  4HYL A; 
#chains in the Genus database with same CATH topology
 3F43 A;  3DOR A;  2CWW A;  3NY7 A;  3DJA A;  2OAS A;  1WXX A;  5EUS A;  3V8V A;  4AEJ A;  4XS5 A;  4AE2 A;  3VSE A;  2VY9 A;  3D3U A;  2KLN A;  3OIZ A;  3AGD A;  1FC9 A;  1WXW A;  3C0K A;  4DGH A;  5EUZ A;  1VC1 A;  1H4X A;  5EZB A;  1AUZ A;  3GVJ A;  1FCF A;  3GK7 A;  5EUX A;  3DUP A;  3IH8 A;  1K32 A;  2B78 A;  1THN B;  2DXN A;  3QDQ A;  3D03 A;  3V97 A;  1T6R A;  3ZXN A;  3LDF A;  1SBO A;  2RRL A;  3T6O A;  4GHN A;  4L1C A;  3LKL A;  2AS0 A;  5EUW A;  3GHF A;  3MGL A;  1TID B;  3GVL A;  1V0E A;  1HF2 A;  3IHA A;  4QTP A;  2KA5 A;  3IHB A;  3EH7 A;  1N6E A;  3LLO A;  3MOG A;  3IF5 A;  2ZOA A;  1TIL B;  3AGE A;  3OIR A;  3IH9 A;  1FC6 A;  1N6F A;  4DGF A;  5EUU A;  3GVK A;  1BUZ A;  4HIZ A;  1H4Y A;  1N6D A;  3JU4 A;  1BPL A;  1H4Z A;  4DMG A;  2DXL A;  3K50 A;  1V0F A;  4L8K A;  1TH8 B;  1FC7 A;  4JC0 A;  3ZTB A;  1J7X A;  3GMF A;  2ZO9 B;  4HYL A; 
#chains in the Genus database with same CATH homology
 5EUU A;  3F43 A;  3MGL A;  1BUZ A;  1TID B;  3NY7 A;  5EUX A;  1H4Y A;  3IH8 A;  5EUS A;  1H4X A;  1H4Z A;  1THN B;  4XS5 A;  3IHA A;  1AUZ A;  4QTP A;  2KA5 A;  3IHB A;  1T6R A;  2VY9 A;  3ZXN A;  2KLN A;  1TH8 B;  3LLO A;  3OIZ A;  3IF5 A;  3AGD A;  1TIL B;  3AGE A;  1SBO A;  3OIR A;  5EZB A;  3ZTB A;  3IH9 A;  3T6O A;  3LKL A;  4DGH A;  5EUW A;  5EUZ A;  1VC1 A;  4DGF A;  4HYL A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1TH8B

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations