1THN | Genus

Total Genus 37

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	37
sequence length	114
structure length	114
Chain Sequence	SLAIDLEVKQDVLIVRLSGELDHHTAEELREQVTDVLENRAIRHIVLNLGQLTFMDSSGLGVILGRYKQIKNVGGQMVVCAVSPAVKRLFDMSGLFKIIRVEADEQFALQALGV

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 114 atoms

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114 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transcription
source organism	Geobacillus stearothermophilus
publication title	Crystal Structures of the ADP and ATP Bound Forms of the Bacillus Anti-sigma Factor SpoIIAB in Complex with the Anti-anti-sigma SpoIIAA. pubmed doi rcsb
molecule keywords	Anti-sigma F factor
total genus	37
structure length	114
sequence length	114
chains with identical sequence	D
ec nomenclature
pdb deposition date	2004-06-01

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
B	PF01740	STAS	STAS domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.750.24	Alpha Beta	2-Layer Sandwich	Transcription Regulator spoIIAA	STAS domain	1thnB00

3ZXNA 3IH9A 4DGFA 3ZTBA 3F43A 3T6OA 3MGLA 4XS5A 2VY9A 4HYLA 1T6RA 1VC1A 4DGHA 3IH8A 3LLOA 1TIDB 3OIRA 1THNB 5EUUA 1H4ZA 1TH8B 3IF5A 1TILB 5EUZA 1H4YA 1AUZA 3AGDA 5EUWA 5EUSA 5EZBA 3AGEA 1H4XA 1BUZA 3NY7A 5EUXA 4QTPA 3IHBA 3OIZA 3LKLA 2KLNA 2KA5A 1SBOA 3IHAA
chains in the Genus database with same CATH superfamily

3F43A 3MGLA 2VY9A 1T6RA 1TIDB 3OIRA 1THNB 2ZOAA 3EH7A 1TILB 1FC6A 3GVKA 5EUWA 3GVJA 4DMGA 3AGEA 3NY7A 3IHBA 1HF2A 2RRLA 3OIZA 3GHFA 1N6EA 4GHNA 3ZXNA 2OASA 3ZTBA 3GK7A 3MOGA 3DUPA 3LLOA 1FCFA 4AEJA 4JC0A 1V0FA 1H4ZA 2B78A 1J7XA 5EUZA 1H4YA 3AGDA 5EZBA 3C0KA 4L8KA 1H4XA 1BUZA 5EUXA 2KLNA 1N6FA 3LDFA 3IH9A 3DJAA 4DGFA 4HIZA 3T6OA 3V97A 4XS5A 2DXNA 3D03A 1VC1A 4DGHA 2DXLA 3IH8A 1TH8B 1WXXA 3IF5A 4L1CA 1N6DA 1WXWA 3GMFA 5EUSA 3DORA 1K32A 1V0EA 1FC9A 3V8VA 2KA5A 3JU4A 2ZO9B 3IHAA 3K50A 3QDQA 1BPLA 4HYLA 3D3UA 4AE2A 2CWWA 5EUUA 1FC7A 3GVLA 1AUZA 3VSEA 2AS0A 4QTPA 3LKLA 1SBOA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3ZXN A;  3IH9 A;  4DGF A;  3ZTB A;  3F43 A;  3T6O A;  3MGL A;  4XS5 A;  2VY9 A;  4HYL A;  1T6R A;  1VC1 A;  4DGH A;  3IH8 A;  3LLO A;  1TID B;  3OIR A;  1THN B;  5EUU A;  1H4Z A;  1TH8 B;  3IF5 A;  1TIL B;  5EUZ A;  1H4Y A;  1AUZ A;  3AGD A;  5EUW A;  5EUS A;  5EZB A;  3AGE A;  1H4X A;  1BUZ A;  3NY7 A;  5EUX A;  4QTP A;  3IHB A;  3OIZ A;  3LKL A;  2KLN A;  2KA5 A;  1SBO A;  3IHA A; 
#chains in the Genus database with same CATH topology
 3F43 A;  3MGL A;  2VY9 A;  1T6R A;  1TID B;  3OIR A;  1THN B;  2ZOA A;  3EH7 A;  1TIL B;  1FC6 A;  3GVK A;  5EUW A;  3GVJ A;  4DMG A;  3AGE A;  3NY7 A;  3IHB A;  1HF2 A;  2RRL A;  3OIZ A;  3GHF A;  1N6E A;  4GHN A;  3ZXN A;  2OAS A;  3ZTB A;  3GK7 A;  3MOG A;  3DUP A;  3LLO A;  1FCF A;  4AEJ A;  4JC0 A;  1V0F A;  1H4Z A;  2B78 A;  1J7X A;  5EUZ A;  1H4Y A;  3AGD A;  5EZB A;  3C0K A;  4L8K A;  1H4X A;  1BUZ A;  5EUX A;  2KLN A;  1N6F A;  3LDF A;  3IH9 A;  3DJA A;  4DGF A;  4HIZ A;  3T6O A;  3V97 A;  4XS5 A;  2DXN A;  3D03 A;  1VC1 A;  4DGH A;  2DXL A;  3IH8 A;  1TH8 B;  1WXX A;  3IF5 A;  4L1C A;  1N6D A;  1WXW A;  3GMF A;  5EUS A;  3DOR A;  1K32 A;  1V0E A;  1FC9 A;  3V8V A;  2KA5 A;  3JU4 A;  2ZO9 B;  3IHA A;  3K50 A;  3QDQ A;  1BPL A;  4HYL A;  3D3U A;  4AE2 A;  2CWW A;  5EUU A;  1FC7 A;  3GVL A;  1AUZ A;  3VSE A;  2AS0 A;  4QTP A;  3LKL A;  1SBO A; 
#chains in the Genus database with same CATH homology
 3ZXN A;  3IH9 A;  4DGF A;  3ZTB A;  3F43 A;  3T6O A;  3MGL A;  4XS5 A;  2VY9 A;  4HYL A;  1T6R A;  1VC1 A;  4DGH A;  3IH8 A;  3LLO A;  1TID B;  3OIR A;  1THN B;  5EUU A;  1H4Z A;  1TH8 B;  3IF5 A;  1TIL B;  5EUZ A;  1H4Y A;  1AUZ A;  3AGD A;  5EUW A;  5EUS A;  5EZB A;  3AGE A;  1H4X A;  1BUZ A;  3NY7 A;  5EUX A;  4QTP A;  3IHB A;  3OIZ A;  3LKL A;  2KLN A;  2KA5 A;  1SBO A;  3IHA A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1THNB

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations