1TID | Genus

Total Genus 39

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	39
sequence length	119
structure length	119
Chain Sequence	GSHMSLAIDLEVKQDVLIVRLSGELDHHTAEELREQVTDVLENRAIRHIVLNLGQLTFMDASGLGVILGRYKQIKNVGGQMVVCAVSPAVKRLFDMSGLFKIIRVEADEQFALQALGVA

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transcription
source organism	Geobacillus stearothermophilus
publication title	Crystal Structures of the ADP and ATP Bound Forms of the Bacillus Anti-sigma Factor SpoIIAB in Complex with the Anti-anti-sigma SpoIIAA. pubmed doi rcsb
molecule keywords	Anti-sigma F factor
total genus	39
structure length	119
sequence length	119
chains with identical sequence	D
ec nomenclature
pdb deposition date	2004-06-02

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
B	PF01740	STAS	STAS domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.750.24	Alpha Beta	2-Layer Sandwich	Transcription Regulator spoIIAA	STAS domain	1tidB00

1THNB 3NY7A 1H4YA 3T6OA 2VY9A 3OIRA 4HYLA 5EUSA 3ZTBA 3F43A 2KLNA 5EUWA 5EUUA 3ZXNA 1T6RA 5EUZA 2KA5A 3LKLA 3IHBA 1BUZA 1AUZA 4DGHA 1VC1A 3IH9A 3LLOA 3OIZA 3AGEA 3IHAA 5EZBA 3IF5A 1H4XA 1TILB 5EUXA 4XS5A 4DGFA 1SBOA 1TH8B 3MGLA 3IH8A 3AGDA 1TIDB 4QTPA 1H4ZA
chains in the Genus database with same CATH superfamily

1THNB 1FC6A 4HIZA 2ZO9B 3F43A 2RRLA 3GK7A 1HF2A 1WXWA 1V0FA 5EUZA 3IHBA 3V8VA 1BUZA 4L1CA 4DGHA 1VC1A 3AGEA 4AE2A 3IF5A 3LDFA 3GHFA 1N6FA 4HYLA 4QTPA 4AEJA 2DXLA 3T6OA 3K50A 3DUPA 3DORA 3GMFA 5EUWA 5EUUA 3C0KA 1J7XA 3D3UA 3VSEA 2DXNA 1K32A 2AS0A 3IHAA 1FCFA 3GVLA 1TH8B 3QDQA 4GHNA 1TIDB 2OASA 3GVKA 2B78A 2VY9A 3D03A 5EUSA 2KLNA 3ZXNA 1V0EA 2KA5A 2ZOAA 1AUZA 3LLOA 3OIZA 4JC0A 3GVJA 4L8KA 3JU4A 3DJAA 3V97A 3MGLA 3AGDA 1BPLA 3MOGA 3NY7A 1H4YA 3OIRA 1FC9A 3ZTBA 1T6RA 3LKLA 3IH9A 3EH7A 2CWWA 1N6EA 5EZBA 1N6DA 1FC7A 1H4XA 1TILB 5EUXA 4XS5A 4DGFA 1SBOA 1WXXA 3IH8A 4DMGA 1H4ZA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1THN B;  3NY7 A;  1H4Y A;  3T6O A;  2VY9 A;  3OIR A;  4HYL A;  5EUS A;  3ZTB A;  3F43 A;  2KLN A;  5EUW A;  5EUU A;  3ZXN A;  1T6R A;  5EUZ A;  2KA5 A;  3LKL A;  3IHB A;  1BUZ A;  1AUZ A;  4DGH A;  1VC1 A;  3IH9 A;  3LLO A;  3OIZ A;  3AGE A;  3IHA A;  5EZB A;  3IF5 A;  1H4X A;  1TIL B;  5EUX A;  4XS5 A;  4DGF A;  1SBO A;  1TH8 B;  3MGL A;  3IH8 A;  3AGD A;  1TID B;  4QTP A;  1H4Z A; 
#chains in the Genus database with same CATH topology
 1THN B;  1FC6 A;  4HIZ A;  2ZO9 B;  3F43 A;  2RRL A;  3GK7 A;  1HF2 A;  1WXW A;  1V0F A;  5EUZ A;  3IHB A;  3V8V A;  1BUZ A;  4L1C A;  4DGH A;  1VC1 A;  3AGE A;  4AE2 A;  3IF5 A;  3LDF A;  3GHF A;  1N6F A;  4HYL A;  4QTP A;  4AEJ A;  2DXL A;  3T6O A;  3K50 A;  3DUP A;  3DOR A;  3GMF A;  5EUW A;  5EUU A;  3C0K A;  1J7X A;  3D3U A;  3VSE A;  2DXN A;  1K32 A;  2AS0 A;  3IHA A;  1FCF A;  3GVL A;  1TH8 B;  3QDQ A;  4GHN A;  1TID B;  2OAS A;  3GVK A;  2B78 A;  2VY9 A;  3D03 A;  5EUS A;  2KLN A;  3ZXN A;  1V0E A;  2KA5 A;  2ZOA A;  1AUZ A;  3LLO A;  3OIZ A;  4JC0 A;  3GVJ A;  4L8K A;  3JU4 A;  3DJA A;  3V97 A;  3MGL A;  3AGD A;  1BPL A;  3MOG A;  3NY7 A;  1H4Y A;  3OIR A;  1FC9 A;  3ZTB A;  1T6R A;  3LKL A;  3IH9 A;  3EH7 A;  2CWW A;  1N6E A;  5EZB A;  1N6D A;  1FC7 A;  1H4X A;  1TIL B;  5EUX A;  4XS5 A;  4DGF A;  1SBO A;  1WXX A;  3IH8 A;  4DMG A;  1H4Z A; 
#chains in the Genus database with same CATH homology
 1THN B;  3NY7 A;  1H4Y A;  3T6O A;  2VY9 A;  3OIR A;  4HYL A;  5EUS A;  3ZTB A;  3F43 A;  2KLN A;  5EUW A;  5EUU A;  3ZXN A;  1T6R A;  5EUZ A;  2KA5 A;  3LKL A;  3IHB A;  1BUZ A;  1AUZ A;  4DGH A;  1VC1 A;  3IH9 A;  3LLO A;  3OIZ A;  3AGE A;  3IHA A;  5EZB A;  3IF5 A;  1H4X A;  1TIL B;  5EUX A;  4XS5 A;  4DGF A;  1SBO A;  1TH8 B;  3MGL A;  3IH8 A;  3AGD A;  1TID B;  4QTP A;  1H4Z A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1TIDB

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations