The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
41
|
sequence length |
110
|
structure length |
110
|
Chain Sequence |
MNNLKLDIVEQDDKAIVRVQGDIDAYNSSELKEQLRNFISTTSKKKIVLDLSSVSYMDSAGLGTLVVILKDAKINGKEFILSSLKESISRILKLTHLDKIFKITDTVEEA
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Crystal structure of the TM1442 protein from Thermotoga maritima, a homolog of the Bacillus subtilis general stress response anti-anti-sigma factor RsbV
pubmed doi rcsb |
| molecule tags |
Gene regulation
|
| source organism |
Thermotoga maritima
|
| molecule keywords |
Putative anti-sigma factor antagonist TM1442
|
| total genus |
41
|
| structure length |
110
|
| sequence length |
110
|
| chains with identical sequence |
B
|
| ec nomenclature | |
| pdb deposition date | 2004-03-03 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01740 | STAS | STAS domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | Transcription Regulator spoIIAA | STAS domain |
#chains in the Genus database with same CATH superfamily 1T6R A; 1H4X A; 1TIL B; 3IF5 A; 3IH9 A; 3ZXN A; 3MGL A; 3OIZ A; 4HYL A; 5EUU A; 1SBO A; 3AGE A; 3LKL A; 2KA5 A; 1TID B; 5EZB A; 1H4Z A; 3T6O A; 3ZTB A; 3NY7 A; 2VY9 A; 1AUZ A; 1TH8 B; 1H4Y A; 3IHB A; 4XS5 A; 1BUZ A; 4QTP A; 3F43 A; 4DGH A; 1THN B; 5EUW A; 3AGD A; 5EUX A; 1VC1 A; 3IHA A; 5EUZ A; 5EUS A; 3IH8 A; 3LLO A; 3OIR A; 2KLN A; 4DGF A; #chains in the Genus database with same CATH topology 4AE2 A; 1T6R A; 3IF5 A; 1HF2 A; 1FC6 A; 3IH9 A; 2ZOA A; 2B78 A; 2KA5 A; 1H4Z A; 3T6O A; 1H4Y A; 4XS5 A; 3F43 A; 1THN B; 3MOG A; 5EUW A; 3VSE A; 1V0E A; 5EUX A; 4AEJ A; 1VC1 A; 3IHA A; 3GVL A; 3JU4 A; 4DMG A; 2OAS A; 5EUZ A; 5EUS A; 1WXX A; 3GMF A; 3GVK A; 2DXL A; 3AGE A; 3GK7 A; 1TID B; 3DOR A; 3EH7 A; 1J7X A; 1BPL A; 4JC0 A; 4L8K A; 3GHF A; 1BUZ A; 2CWW A; 3D3U A; 1V0F A; 3AGD A; 1FC7 A; 3LDF A; 3QDQ A; 4L1C A; 1K32 A; 3C0K A; 3LLO A; 1FC9 A; 4GHN A; 3DUP A; 3OIR A; 1AUZ A; 1H4X A; 1TIL B; 3ZXN A; 4HYL A; 5EUU A; 1N6D A; 3ZTB A; 3NY7 A; 2AS0 A; 2VY9 A; 1TH8 B; 3IHB A; 3D03 A; 3K50 A; 4DGH A; 2DXN A; 1FCF A; 1WXW A; 2RRL A; 2ZO9 B; 3IH8 A; 2KLN A; 4DGF A; 3GVJ A; 3MGL A; 4HIZ A; 3OIZ A; 1SBO A; 3DJA A; 3LKL A; 5EZB A; 1N6F A; 4QTP A; 3V97 A; 3V8V A; 1N6E A; #chains in the Genus database with same CATH homology 1T6R A; 1H4X A; 1TIL B; 3IF5 A; 3IH9 A; 3ZXN A; 3MGL A; 3OIZ A; 4HYL A; 5EUU A; 1SBO A; 3AGE A; 3LKL A; 2KA5 A; 1TID B; 5EZB A; 1H4Z A; 3T6O A; 3ZTB A; 3NY7 A; 2VY9 A; 1AUZ A; 1TH8 B; 1H4Y A; 3IHB A; 4XS5 A; 1BUZ A; 4QTP A; 3F43 A; 4DGH A; 1THN B; 5EUW A; 3AGD A; 5EUX A; 1VC1 A; 3IHA A; 5EUZ A; 5EUS A; 3IH8 A; 3LLO A; 3OIR A; 2KLN A; 4DGF A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
