1VC1 | Genus

Total Genus 41

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	41
sequence length	110
structure length	110
Chain Sequence	MNNLKLDIVEQDDKAIVRVQGDIDAYNSSELKEQLRNFISTTSKKKIVLDLSSVSYMDSAGLGTLVVILKDAKINGKEFILSSLKESISRILKLTHLDKIFKITDTVEEA

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Gene regulation
source organism	Thermotoga maritima
publication title	Crystal structure of the TM1442 protein from Thermotoga maritima, a homolog of the Bacillus subtilis general stress response anti-anti-sigma factor RsbV pubmed doi rcsb
molecule keywords	Putative anti-sigma factor antagonist TM1442
total genus	41
structure length	110
sequence length	110
chains with identical sequence	B
ec nomenclature
pdb deposition date	2004-03-03

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01740	STAS	STAS domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.750.24	Alpha Beta	2-Layer Sandwich	Transcription Regulator spoIIAA	STAS domain	1vc1A00

3IHBA 1TIDB 1TILB 2KLNA 5EUSA 1AUZA 1H4ZA 4DGHA 3T6OA 4XS5A 3F43A 1T6RA 4HYLA 3OIZA 2KA5A 3AGDA 1VC1A 3IH9A 3IHAA 5EUZA 3ZXNA 3NY7A 3OIRA 5EUWA 1SBOA 3LKLA 3MGLA 4QTPA 5EUXA 1H4XA 3ZTBA 4DGFA 1THNB 5EZBA 3AGEA 2VY9A 1BUZA 5EUUA 1H4YA 3IH8A 3IF5A 3LLOA 1TH8B
chains in the Genus database with same CATH superfamily

2KLNA 1AUZA 1H4ZA 3T6OA 2ZO9B 4HYLA 3OIZA 2KA5A 1V0FA 4L1CA 3QDQA 3D03A 3OIRA 1SBOA 3LDFA 3V8VA 4DGFA 3AGEA 2VY9A 2DXNA 1N6FA 3LLOA 1N6EA 1TIDB 3GVJA 3GMFA 1FC7A 2ZOAA 2B78A 1VC1A 3IHAA 5EUZA 3NY7A 4DMGA 3VSEA 3DUPA 3GK7A 3GVKA 4L8KA 1FCFA 1H4XA 3DJAA 2RRLA 1BUZA 5EUUA 3IH8A 4AE2A 2DXLA 3V97A 1TILB 1J7XA 4XS5A 4GHNA 1V0EA 1N6DA 2CWWA 2OASA 3ZXNA 1FC6A 1BPLA 4JC0A 3K50A 3ZTBA 1FC9A 2AS0A 3EH7A 1H4YA 3IF5A 3JU4A 3DORA 1TH8B 3IHBA 4DGHA 3F43A 1T6RA 3AGDA 4AEJA 3IH9A 4HIZA 1K32A 1WXWA 3GVLA 1WXXA 3D3UA 5EUWA 3MOGA 3LKLA 3MGLA 4QTPA 5EUXA 1THNB 5EZBA 3GHFA 3C0KA 1HF2A 5EUSA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3IHB A;  1TID B;  1TIL B;  2KLN A;  5EUS A;  1AUZ A;  1H4Z A;  4DGH A;  3T6O A;  4XS5 A;  3F43 A;  1T6R A;  4HYL A;  3OIZ A;  2KA5 A;  3AGD A;  1VC1 A;  3IH9 A;  3IHA A;  5EUZ A;  3ZXN A;  3NY7 A;  3OIR A;  5EUW A;  1SBO A;  3LKL A;  3MGL A;  4QTP A;  5EUX A;  1H4X A;  3ZTB A;  4DGF A;  1THN B;  5EZB A;  3AGE A;  2VY9 A;  1BUZ A;  5EUU A;  1H4Y A;  3IH8 A;  3IF5 A;  3LLO A;  1TH8 B; 
#chains in the Genus database with same CATH topology
 2KLN A;  1AUZ A;  1H4Z A;  3T6O A;  2ZO9 B;  4HYL A;  3OIZ A;  2KA5 A;  1V0F A;  4L1C A;  3QDQ A;  3D03 A;  3OIR A;  1SBO A;  3LDF A;  3V8V A;  4DGF A;  3AGE A;  2VY9 A;  2DXN A;  1N6F A;  3LLO A;  1N6E A;  1TID B;  3GVJ A;  3GMF A;  1FC7 A;  2ZOA A;  2B78 A;  1VC1 A;  3IHA A;  5EUZ A;  3NY7 A;  4DMG A;  3VSE A;  3DUP A;  3GK7 A;  3GVK A;  4L8K A;  1FCF A;  1H4X A;  3DJA A;  2RRL A;  1BUZ A;  5EUU A;  3IH8 A;  4AE2 A;  2DXL A;  3V97 A;  1TIL B;  1J7X A;  4XS5 A;  4GHN A;  1V0E A;  1N6D A;  2CWW A;  2OAS A;  3ZXN A;  1FC6 A;  1BPL A;  4JC0 A;  3K50 A;  3ZTB A;  1FC9 A;  2AS0 A;  3EH7 A;  1H4Y A;  3IF5 A;  3JU4 A;  3DOR A;  1TH8 B;  3IHB A;  4DGH A;  3F43 A;  1T6R A;  3AGD A;  4AEJ A;  3IH9 A;  4HIZ A;  1K32 A;  1WXW A;  3GVL A;  1WXX A;  3D3U A;  5EUW A;  3MOG A;  3LKL A;  3MGL A;  4QTP A;  5EUX A;  1THN B;  5EZB A;  3GHF A;  3C0K A;  1HF2 A;  5EUS A; 
#chains in the Genus database with same CATH homology
 3IHB A;  1TID B;  1TIL B;  2KLN A;  5EUS A;  1AUZ A;  1H4Z A;  4DGH A;  3T6O A;  4XS5 A;  3F43 A;  1T6R A;  4HYL A;  3OIZ A;  2KA5 A;  3AGD A;  1VC1 A;  3IH9 A;  3IHA A;  5EUZ A;  3ZXN A;  3NY7 A;  3OIR A;  5EUW A;  1SBO A;  3LKL A;  3MGL A;  4QTP A;  5EUX A;  1H4X A;  3ZTB A;  4DGF A;  1THN B;  5EZB A;  3AGE A;  2VY9 A;  1BUZ A;  5EUU A;  1H4Y A;  3IH8 A;  3IF5 A;  3LLO A;  1TH8 B;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1VC1A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations