The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
11
|
sequence length |
87
|
structure length |
87
|
Chain Sequence |
MKVTDVRLRKIQTDGRMKALVSITLDEAFVIHDLRVIEGNSGLFVAMPSKRTPDGEFRDIAHPINSDMRQEIQDAVMKVYDETDEVI
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
The Crystal structure of SpoVG from Staphylococcus epidermidis ATCC 12228
rcsb |
| molecule keywords |
Putative septation protein spoVG
|
| molecule tags |
Structural genomics, unknown function
|
| source organism |
Staphylococcus epidermidis
|
| total genus |
11
|
| structure length |
87
|
| sequence length |
87
|
| chains with identical sequence |
B
|
| ec nomenclature | |
| pdb deposition date | 2006-09-06 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF04026 | SpoVG | SpoVG |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | Arylsulfatase, C-terminal domain | Stage V sporulation protein G |
#chains in the Genus database with same CATH superfamily 2I9X A; 2I9Z A; 2IA9 A; #chains in the Genus database with same CATH topology 4N9J A; 3ED4 A; 4HCO A; 4J7B B; 2N19 A; 4CYR A; 1E33 P; 1AUK A; 2E50 A; 4FDI A; 3C5L A; 3P2W A; 2I9X A; 3P35 A; 1UMW A; 4X9W A; 4O56 A; 3RQ7 A; 4H5X A; 4NK7 A; 4LKL A; 4X9V A; 3FS3 A; 3GYW A; 3GYV A; 5DMV C; 4LKM A; 4H71 A; 3HIK A; 4O9W A; 4RS6 A; 1P49 A; 1FSU A; 3Q1I A; 3LXQ A; 4DFW A; 4HAB A; 4CXU A; 1N2K A; 3HFD A; 4CXK A; 2VKZ G; 1E2T A; 3P34 A; 3P37 A; 1E3C P; 1E2S P; 3LM3 A; 5AJ9 A; 1Q4O A; 4CXS A; 2QZU A; 4N7Z A; 3HMJ G; 2IA9 A; 4X9R A; 2I9Z A; 4RCP A; 1N2L A; 4WHH A; 4N7V A; 5DNJ A; 4HY2 A; 4YYP A; 2OJX A; 4E9C A; 3BZI A; 5DAY A; 4E67 A; 1F32 A; 3P2Z A; 1A87 A; 1HDH A; 3KDR A; 4CYS A; 2OGQ A; 1Q4K A; 5LHZ A; 5J19 A; 1F34 B; 4XB0 A; 5DMS A; 4E9D A; 4G7N A; 3P36 A; 4WHL A; 3HIH A; 4FDJ A; 4O6W A; 1E1Z P; 3FVH A; 4NKB A; 4WHK A; 2UV8 G; #chains in the Genus database with same CATH homology 2I9X A; 2I9Z A; 2IA9 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
