5DNJA

Mouse polo-box domain and peptide analog 702
Total Genus 70
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
70
sequence length
221
structure length
215
Chain Sequence
HLSDLLQQLTSVNASKPSERGLVRQEEAEDPACIPIFWVSKWVDYSDKYGLGYQLCDNSVGVLFNDSTRLILYNDGDSLQYIERDGTESYLTVSSHPNSLMKKITLLNYFRNYMSEHLLKAGANITPRELPYLRTWFRTRSAIILHLSNGTVQINFFQDHTKLILCPLMAAVTYINEKRDFQTYRLSLLEEYGCCKELASRLRYARTMVDKLLSS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transferase/transferase inhibitor
molecule keywords Serine/threonine-protein kinase PLK1
publication title Structural basis for recognition of Emi2 by Polo-like kinase 1 and development of peptidomimetics blocking oocyte maturation and fertilization.
pubmed doi rcsb
source organism Mus musculus
total genus 70
structure length 215
sequence length 221
ec nomenclature ec 2.7.11.21: Polo kinase.
pdb deposition date 2015-09-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00659 POLO_box POLO box duplicated region
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1120.30 Alpha Beta 2-Layer Sandwich Arylsulfatase, C-terminal domain POLO box domain 5dnjA02
3.30.1120.30 Alpha Beta 2-Layer Sandwich Arylsulfatase, C-terminal domain POLO box domain 5dnjA01
2OJXA 5DMSA 4O56A 4E9DA 5DNJA 4LKLA 3P2WA 1Q4KA 5DMVC 3P36A 3P34A 4DFWA 4WHLA 4H71A 4WHHA 4X9WA 4H5XA 3BZIA 4J7BB 3Q1IA 4X9VA 4LKMA 4O9WA 4O6WA 4RCPA 3C5LA 3P37A 4E67A 4HABA 5LHZA 2OGQA 4XB0A 4E9CA 3FVHA 3P35A 4X9RA 4HY2A 3RQ7A 4WHKA 4RS6A 4YYPA 3HIKA 3P2ZA 3HIHA 2N19A 4HCOA 5J19A 1Q4OA 1UMWA
chains in the Genus database with same CATH superfamily
3LM3A 5DAYA 5DMVC 1F34B 2I9XA 2QZUA 4X9VA 4O9WA 4NKBA 4CXUA 4HABA 2OGQA 1HDHA 4E9CA 3P35A 4NK7A 4CYSA 1N2KA 4N7VA 2N19A 4HCOA 1Q4OA 1A87A 2OJXA 4O56A 5DNJA 3P2WA 1E33P 3P36A 4CXSA 4DFWA 4WHLA 1E2TA 4H71A 4X9WA 4H5XA 4LKMA 2IA9A 3ED4A 4O6WA 4RCPA 3C5LA 4CXKA 3P37A 4E67A 5LHZA 4XB0A 3FVHA 4N7ZA 4HY2A 4CYRA 4FDJA 4RS6A 3HIKA 3P2ZA 3HIHA 3FS3A 2VKZG 3GYWA 1E3CP 1P49A 3HMJG 1AUKA 3LXQA 4WHHA 1FSUA 3BZIA 4J7BB 3Q1IA 5AJ9A 1E2SP 3KDRA 2UV8G 4WHKA 4YYPA 1UMWA 5DMSA 4E9DA 4LKLA 1F32A 1Q4KA 4G7NA 1E1ZP 3GYVA 3P34A 3HFDA 4X9RA 4FDIA 3RQ7A 1N2LA 4N9JA 2I9ZA 2E50A 5J19A
chains in the Genus database with same CATH topology
2OJXA 5DMSA 4O56A 4E9DA 5DNJA 4LKLA 3P2WA 1Q4KA 5DMVC 3P36A 3P34A 4DFWA 4WHLA 4H71A 4WHHA 4X9WA 4H5XA 3BZIA 4J7BB 3Q1IA 4X9VA 4LKMA 4O9WA 4O6WA 4RCPA 3C5LA 3P37A 4E67A 4HABA 5LHZA 2OGQA 4XB0A 4E9CA 3FVHA 3P35A 4X9RA 4HY2A 3RQ7A 4WHKA 4RS6A 4YYPA 3HIKA 3P2ZA 3HIHA 2N19A 4HCOA 5J19A 1Q4OA 1UMWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2OJX A;  5DMS A;  4O56 A;  4E9D A;  5DNJ A;  4LKL A;  3P2W A;  1Q4K A;  5DMV C;  3P36 A;  3P34 A;  4DFW A;  4WHL A;  4H71 A;  4WHH A;  4X9W A;  4H5X A;  3BZI A;  4J7B B;  3Q1I A;  4X9V A;  4LKM A;  4O9W A;  4O6W A;  4RCP A;  3C5L A;  3P37 A;  4E67 A;  4HAB A;  5LHZ A;  2OGQ A;  4XB0 A;  4E9C A;  3FVH A;  3P35 A;  4X9R A;  4HY2 A;  3RQ7 A;  4WHK A;  4RS6 A;  4YYP A;  3HIK A;  3P2Z A;  3HIH A;  2N19 A;  4HCO A;  5J19 A;  1Q4O A;  1UMW A; 
#chains in the Genus database with same CATH topology
 3LM3 A;  5DAY A;  5DMV C;  1F34 B;  2I9X A;  2QZU A;  4X9V A;  4O9W A;  4NKB A;  4CXU A;  4HAB A;  2OGQ A;  1HDH A;  4E9C A;  3P35 A;  4NK7 A;  4CYS A;  1N2K A;  4N7V A;  2N19 A;  4HCO A;  1Q4O A;  1A87 A;  2OJX A;  4O56 A;  5DNJ A;  3P2W A;  1E33 P;  3P36 A;  4CXS A;  4DFW A;  4WHL A;  1E2T A;  4H71 A;  4X9W A;  4H5X A;  4LKM A;  2IA9 A;  3ED4 A;  4O6W A;  4RCP A;  3C5L A;  4CXK A;  3P37 A;  4E67 A;  5LHZ A;  4XB0 A;  3FVH A;  4N7Z A;  4HY2 A;  4CYR A;  4FDJ A;  4RS6 A;  3HIK A;  3P2Z A;  3HIH A;  3FS3 A;  2VKZ G;  3GYW A;  1E3C P;  1P49 A;  3HMJ G;  1AUK A;  3LXQ A;  4WHH A;  1FSU A;  3BZI A;  4J7B B;  3Q1I A;  5AJ9 A;  1E2S P;  3KDR A;  2UV8 G;  4WHK A;  4YYP A;  1UMW A;  5DMS A;  4E9D A;  4LKL A;  1F32 A;  1Q4K A;  4G7N A;  1E1Z P;  3GYV A;  3P34 A;  3HFD A;  4X9R A;  4FDI A;  3RQ7 A;  1N2L A;  4N9J A;  2I9Z A;  2E50 A;  5J19 A; 
#chains in the Genus database with same CATH homology
 2OJX A;  5DMS A;  4O56 A;  4E9D A;  5DNJ A;  4LKL A;  3P2W A;  1Q4K A;  5DMV C;  3P36 A;  3P34 A;  4DFW A;  4WHL A;  4H71 A;  4WHH A;  4X9W A;  4H5X A;  3BZI A;  4J7B B;  3Q1I A;  4X9V A;  4LKM A;  4O9W A;  4O6W A;  4RCP A;  3C5L A;  3P37 A;  4E67 A;  4HAB A;  5LHZ A;  2OGQ A;  4XB0 A;  4E9C A;  3FVH A;  3P35 A;  4X9R A;  4HY2 A;  3RQ7 A;  4WHK A;  4RS6 A;  4YYP A;  3HIK A;  3P2Z A;  3HIH A;  2N19 A;  4HCO A;  5J19 A;  1Q4O A;  1UMW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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