3P2ZA

Polo-like kinase i polo-box domain in complex with plhspta phosphopeptide from pbip1
Total Genus 67
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
67
sequence length
227
structure length
210
Chain Sequence
SPEFDCHLSDMLQQLHSVEAEDPACIPIFWVSKWVDYSDKYGLGYQLCDNSVGVLFNDSTRLILYNDGDSLQYIERDGTESYLTVSSHPNSLMKKITLLKYFRNYMSEHLLKAGANITPDELARLPYLRTWFRTRSAIILHLSNGSVQINFFQDHTKLILCPLMAAVTYIDEKRDFRTYRLSLLEEYGCCKELASRLRYARTMVDKLLSS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title From crystal packing to molecular recognition: prediction and discovery of a binding site on the surface of polo-like kinase 1
pubmed doi rcsb
molecule keywords Serine/threonine-protein kinase PLK1
source organism Homo sapiens
molecule tags Transferase
total genus 67
structure length 210
sequence length 227
ec nomenclature ec 2.7.11.21: Polo kinase.
pdb deposition date 2010-10-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00659 POLO_box POLO box duplicated region
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1120.30 Alpha Beta 2-Layer Sandwich Arylsulfatase, C-terminal domain POLO box domain 3p2zA02
3.30.1120.30 Alpha Beta 2-Layer Sandwich Arylsulfatase, C-terminal domain POLO box domain 3p2zA01
3FVHA 4WHLA 3P36A 2OGQA 4HY2A 4RCPA 5J19A 4X9WA 4WHKA 5LHZA 3Q1IA 4LKLA 3P35A 4RS6A 3P2WA 5DNJA 4XB0A 3P37A 2OJXA 4X9RA 5DMVC 4YYPA 4O56A 1UMWA 4X9VA 4H71A 1Q4KA 4DFWA 4O6WA 5DMSA 4WHHA 2N19A 3P34A 4E9CA 1Q4OA 4O9WA 3HIKA 4E67A 4HCOA 4LKMA 3RQ7A 3BZIA 3C5LA 4HABA 4E9DA 4J7BB 4H5XA 3P2ZA 3HIHA
chains in the Genus database with same CATH superfamily
3P36A 4HY2A 4RCPA 4CYRA 1E33P 4RS6A 2I9XA 3P35A 1AUKA 2IA9A 3KDRA 4CYSA 4N9JA 1N2LA 1A87A 5DMVC 1UMWA 4H71A 4E9CA 3GYWA 5DAYA 3BZIA 2I9ZA 3P2ZA 3FVHA 2OGQA 1FSUA 3HFDA 3P2WA 4CXUA 2E50A 4YYPA 2UV8G 4X9VA 1Q4KA 4DFWA 1E1ZP 2N19A 3P34A 3HMJG 4NKBA 4E67A 4HCOA 4LKMA 3RQ7A 1E3CP 4HABA 1HDHA 4G7NA 2VKZG 4J7BB 1F32A 3HIHA 1E2SP 1P49A 4X9WA 5LHZA 3Q1IA 4NK7A 1N2KA 4CXKA 4CXSA 1F34B 3P37A 4O56A 3ED4A 1E2TA 4WHHA 1Q4OA 4O9WA 3HIKA 3FS3A 4E9DA 4H5XA 4FDJA 5AJ9A 5J19A 4WHKA 4LKLA 3LM3A 2QZUA 5DNJA 4XB0A 4N7ZA 2OJXA 4X9RA 4O6WA 4N7VA 5DMSA 3LXQA 3GYVA 3C5LA 4FDIA 4WHLA
chains in the Genus database with same CATH topology
3FVHA 4WHLA 3P36A 2OGQA 4HY2A 4RCPA 5J19A 4X9WA 4WHKA 5LHZA 3Q1IA 4LKLA 3P35A 4RS6A 3P2WA 5DNJA 4XB0A 3P37A 2OJXA 4X9RA 5DMVC 4YYPA 4O56A 1UMWA 4X9VA 4H71A 1Q4KA 4DFWA 4O6WA 5DMSA 4WHHA 2N19A 3P34A 4E9CA 1Q4OA 4O9WA 3HIKA 4E67A 4HCOA 4LKMA 3RQ7A 3BZIA 3C5LA 4HABA 4E9DA 4J7BB 4H5XA 3P2ZA 3HIHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3FVH A;  4WHL A;  3P36 A;  2OGQ A;  4HY2 A;  4RCP A;  5J19 A;  4X9W A;  4WHK A;  5LHZ A;  3Q1I A;  4LKL A;  3P35 A;  4RS6 A;  3P2W A;  5DNJ A;  4XB0 A;  3P37 A;  2OJX A;  4X9R A;  5DMV C;  4YYP A;  4O56 A;  1UMW A;  4X9V A;  4H71 A;  1Q4K A;  4DFW A;  4O6W A;  5DMS A;  4WHH A;  2N19 A;  3P34 A;  4E9C A;  1Q4O A;  4O9W A;  3HIK A;  4E67 A;  4HCO A;  4LKM A;  3RQ7 A;  3BZI A;  3C5L A;  4HAB A;  4E9D A;  4J7B B;  4H5X A;  3P2Z A;  3HIH A; 
#chains in the Genus database with same CATH topology
 3P36 A;  4HY2 A;  4RCP A;  4CYR A;  1E33 P;  4RS6 A;  2I9X A;  3P35 A;  1AUK A;  2IA9 A;  3KDR A;  4CYS A;  4N9J A;  1N2L A;  1A87 A;  5DMV C;  1UMW A;  4H71 A;  4E9C A;  3GYW A;  5DAY A;  3BZI A;  2I9Z A;  3P2Z A;  3FVH A;  2OGQ A;  1FSU A;  3HFD A;  3P2W A;  4CXU A;  2E50 A;  4YYP A;  2UV8 G;  4X9V A;  1Q4K A;  4DFW A;  1E1Z P;  2N19 A;  3P34 A;  3HMJ G;  4NKB A;  4E67 A;  4HCO A;  4LKM A;  3RQ7 A;  1E3C P;  4HAB A;  1HDH A;  4G7N A;  2VKZ G;  4J7B B;  1F32 A;  3HIH A;  1E2S P;  1P49 A;  4X9W A;  5LHZ A;  3Q1I A;  4NK7 A;  1N2K A;  4CXK A;  4CXS A;  1F34 B;  3P37 A;  4O56 A;  3ED4 A;  1E2T A;  4WHH A;  1Q4O A;  4O9W A;  3HIK A;  3FS3 A;  4E9D A;  4H5X A;  4FDJ A;  5AJ9 A;  5J19 A;  4WHK A;  4LKL A;  3LM3 A;  2QZU A;  5DNJ A;  4XB0 A;  4N7Z A;  2OJX A;  4X9R A;  4O6W A;  4N7V A;  5DMS A;  3LXQ A;  3GYV A;  3C5L A;  4FDI A;  4WHL A; 
#chains in the Genus database with same CATH homology
 3FVH A;  4WHL A;  3P36 A;  2OGQ A;  4HY2 A;  4RCP A;  5J19 A;  4X9W A;  4WHK A;  5LHZ A;  3Q1I A;  4LKL A;  3P35 A;  4RS6 A;  3P2W A;  5DNJ A;  4XB0 A;  3P37 A;  2OJX A;  4X9R A;  5DMV C;  4YYP A;  4O56 A;  1UMW A;  4X9V A;  4H71 A;  1Q4K A;  4DFW A;  4O6W A;  5DMS A;  4WHH A;  2N19 A;  3P34 A;  4E9C A;  1Q4O A;  4O9W A;  3HIK A;  4E67 A;  4HCO A;  4LKM A;  3RQ7 A;  3BZI A;  3C5L A;  4HAB A;  4E9D A;  4J7B B;  4H5X A;  3P2Z A;  3HIH A; 
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