5DMVC

Polo-box domain of mouse polo-like kinase 1 complexed with emi2 (146-177)
Total Genus 72
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
72
sequence length
230
structure length
230
Chain Sequence
CHLSDLLQQLTSVNASKPSERGLVRQEEAEDPACIPIFWVSKWVDYSDKYGLGYQLCDNSVGVLFNDSTRLILYNDGDSLQYIERDGTESYLTVSSHPNSLMKKITLLNYFRNYMSEHLLKAGANITPREGDELARLPYLRTWFRTRSAIILHLSNGTVQINFFQDHTKLILCPLMAAVTYINEKRDFQTYRLSLLEEYGCCKELASRLRYARTMVDKLLSSRSASNRLK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transferase/metal binding protein
source organism Mus musculus
publication title Structural basis for recognition of Emi2 by Polo-like kinase 1 and development of peptidomimetics blocking oocyte maturation and fertilization.
pubmed doi rcsb
molecule keywords Serine/threonine-protein kinase PLK1
total genus 72
structure length 230
sequence length 230
ec nomenclature ec 2.7.11.21: Polo kinase.
pdb deposition date 2015-09-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF00659 POLO_box POLO box duplicated region
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1120.30 Alpha Beta 2-Layer Sandwich Arylsulfatase, C-terminal domain POLO box domain 5dmvC02
3.30.1120.30 Alpha Beta 2-Layer Sandwich Arylsulfatase, C-terminal domain POLO box domain 5dmvC01
4RS6A 5LHZA 4XB0A 3P2ZA 3FVHA 5DNJA 3RQ7A 4YYPA 4HY2A 4O6WA 4H71A 1Q4OA 2OJXA 2N19A 4DFWA 4LKMA 5DMVC 4WHLA 3P35A 3Q1IA 4E9DA 3C5LA 4J7BB 5DMSA 4X9RA 1Q4KA 3BZIA 4E67A 4O9WA 5J19A 4LKLA 4HCOA 4RCPA 4X9VA 4HABA 3HIHA 4X9WA 4WHHA 3HIKA 3P2WA 4H5XA 3P37A 3P36A 1UMWA 2OGQA 4WHKA 4O56A 4E9CA 3P34A
chains in the Genus database with same CATH superfamily
4RS6A 4CXSA 4XB0A 1N2LA 3P2ZA 2I9ZA 4HY2A 4O6WA 1F32A 4N9JA 1A87A 4DFWA 3KDRA 5AJ9A 4CYSA 3P35A 3HMJG 4FDJA 4J7BB 3GYVA 1F34B 1P49A 1N2KA 4H5XA 1E2SP 1E33P 3LM3A 4E9CA 5LHZA 4CXUA 4N7ZA 1HDHA 2E50A 4H71A 4CYRA 4WHLA 2VKZG 3Q1IA 3LXQA 4E9DA 4E67A 1E2TA 4X9VA 5DAYA 2UV8G 1FSUA 3HIKA 3P36A 1UMWA 5DNJA 3FVHA 1Q4OA 2OJXA 4G7NA 4LKMA 5DMSA 1Q4KA 4N7VA 3HFDA 3BZIA 5J19A 3HIHA 4NK7A 1AUKA 4WHHA 4CXKA 2OGQA 4O56A 1E1ZP 2IA9A 2I9XA 4FDIA 3RQ7A 4YYPA 2N19A 1E3CP 3GYWA 5DMVC 3ED4A 3C5LA 4X9RA 3FS3A 4NKBA 4O9WA 2QZUA 4LKLA 4HCOA 4RCPA 4HABA 4X9WA 3P2WA 3P37A 4WHKA 3P34A
chains in the Genus database with same CATH topology
4RS6A 5LHZA 4XB0A 3P2ZA 3FVHA 5DNJA 3RQ7A 4YYPA 4HY2A 4O6WA 4H71A 1Q4OA 2OJXA 2N19A 4DFWA 4LKMA 5DMVC 4WHLA 3P35A 3Q1IA 4E9DA 3C5LA 4J7BB 5DMSA 4X9RA 1Q4KA 3BZIA 4E67A 4O9WA 5J19A 4LKLA 4HCOA 4RCPA 4X9VA 4HABA 3HIHA 4X9WA 4WHHA 3HIKA 3P2WA 4H5XA 3P37A 3P36A 1UMWA 2OGQA 4WHKA 4O56A 4E9CA 3P34A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4RS6 A;  5LHZ A;  4XB0 A;  3P2Z A;  3FVH A;  5DNJ A;  3RQ7 A;  4YYP A;  4HY2 A;  4O6W A;  4H71 A;  1Q4O A;  2OJX A;  2N19 A;  4DFW A;  4LKM A;  5DMV C;  4WHL A;  3P35 A;  3Q1I A;  4E9D A;  3C5L A;  4J7B B;  5DMS A;  4X9R A;  1Q4K A;  3BZI A;  4E67 A;  4O9W A;  5J19 A;  4LKL A;  4HCO A;  4RCP A;  4X9V A;  4HAB A;  3HIH A;  4X9W A;  4WHH A;  3HIK A;  3P2W A;  4H5X A;  3P37 A;  3P36 A;  1UMW A;  2OGQ A;  4WHK A;  4O56 A;  4E9C A;  3P34 A; 
#chains in the Genus database with same CATH topology
 4RS6 A;  4CXS A;  4XB0 A;  1N2L A;  3P2Z A;  2I9Z A;  4HY2 A;  4O6W A;  1F32 A;  4N9J A;  1A87 A;  4DFW A;  3KDR A;  5AJ9 A;  4CYS A;  3P35 A;  3HMJ G;  4FDJ A;  4J7B B;  3GYV A;  1F34 B;  1P49 A;  1N2K A;  4H5X A;  1E2S P;  1E33 P;  3LM3 A;  4E9C A;  5LHZ A;  4CXU A;  4N7Z A;  1HDH A;  2E50 A;  4H71 A;  4CYR A;  4WHL A;  2VKZ G;  3Q1I A;  3LXQ A;  4E9D A;  4E67 A;  1E2T A;  4X9V A;  5DAY A;  2UV8 G;  1FSU A;  3HIK A;  3P36 A;  1UMW A;  5DNJ A;  3FVH A;  1Q4O A;  2OJX A;  4G7N A;  4LKM A;  5DMS A;  1Q4K A;  4N7V A;  3HFD A;  3BZI A;  5J19 A;  3HIH A;  4NK7 A;  1AUK A;  4WHH A;  4CXK A;  2OGQ A;  4O56 A;  1E1Z P;  2IA9 A;  2I9X A;  4FDI A;  3RQ7 A;  4YYP A;  2N19 A;  1E3C P;  3GYW A;  5DMV C;  3ED4 A;  3C5L A;  4X9R A;  3FS3 A;  4NKB A;  4O9W A;  2QZU A;  4LKL A;  4HCO A;  4RCP A;  4HAB A;  4X9W A;  3P2W A;  3P37 A;  4WHK A;  3P34 A; 
#chains in the Genus database with same CATH homology
 4RS6 A;  5LHZ A;  4XB0 A;  3P2Z A;  3FVH A;  5DNJ A;  3RQ7 A;  4YYP A;  4HY2 A;  4O6W A;  4H71 A;  1Q4O A;  2OJX A;  2N19 A;  4DFW A;  4LKM A;  5DMV C;  4WHL A;  3P35 A;  3Q1I A;  4E9D A;  3C5L A;  4J7B B;  5DMS A;  4X9R A;  1Q4K A;  3BZI A;  4E67 A;  4O9W A;  5J19 A;  4LKL A;  4HCO A;  4RCP A;  4X9V A;  4HAB A;  3HIH A;  4X9W A;  4WHH A;  3HIK A;  3P2W A;  4H5X A;  3P37 A;  3P36 A;  1UMW A;  2OGQ A;  4WHK A;  4O56 A;  4E9C A;  3P34 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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