2RRL | Genus

Total Genus 23

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	23
sequence length	169
structure length	169
Chain Sequence	HMASDDRATGPALTPLVVAAAATSAKVEVDSPPAPVTHGAAMPTLSSATAQPLPVASAPVLSAPLGSHEWQQTFSQQVMLFTRQGQQSAQLRLHPEELGQVHISLKLDDNQAQLQMVSPHSHVRAALEAALPMLRTQLAESGIQLGQSSISSESFAGQQQSSSQQQSSR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Protein transport
source organism	Salmonella typhimurium
publication title	The NMR structure of FliK, the trigger for the switch of substrate specificity in the flagellar type III secretion apparatus pubmed doi rcsb
molecule keywords	Flagellar hook-length control protein
total genus	23
structure length	169
sequence length	169
ec nomenclature
pdb deposition date	2011-01-02

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF02120	Flg_hook	Flagellar hook-length control protein FliK

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.750.140	Alpha Beta	2-Layer Sandwich	Transcription Regulator spoIIAA	Transcription Regulator spoIIAA	2rrlA01

2RRLA
chains in the Genus database with same CATH superfamily

3AGEA 1K32A 2B78A 3IH8A 1H4ZA 3LLOA 3F43A 1WXWA 1TILB 4JC0A 4L1CA 3LDFA 5EZBA 3GVLA 4DGHA 3OIZA 2DXNA 3MGLA 3DORA 3ZTBA 1N6FA 3V8VA 1J7XA 2OASA 1T6RA 3GVJA 1FC7A 2VY9A 3K50A 3AGDA 4DMGA 4L8KA 1H4YA 1N6DA 4GHNA 1SBOA 5EUXA 3EH7A 2ZOAA 3GHFA 3V97A 3GVKA 1FCFA 1AUZA 3JU4A 4QTPA 2RRLA 1TH8B 1TIDB 4HYLA 4DGFA 3GK7A 4AE2A 1V0FA 3ZXNA 2DXLA 5EUUA 3D3UA 3DUPA 3IHBA 1HF2A 4AEJA 1FC9A 3MOGA 1BUZA 4XS5A 5EUSA 1H4XA 3D03A 3LKLA 2KA5A 3IH9A 1FC6A 1VC1A 1WXXA 3IF5A 3DJAA 1BPLA 2ZO9B 3C0KA 4HIZA 2AS0A 3IHAA 5EUWA 1N6EA 2KLNA 3VSEA 1THNB 2CWWA 3GMFA 3QDQA 3T6OA 3NY7A 5EUZA 1V0EA 3OIRA
chains in the Genus database with same CATH topology

3MOGA 1K32A 3GHFA 1N6FA 3D03A 1J7XA 1FCFA 2RRLA 1FC6A 1FC7A 3DJAA 3K50A 4JC0A 1BPLA 2ZO9B 4L1CA 4AE2A 1N6EA 4L8KA 2DXLA 1N6DA 4GHNA 3GMFA 3DUPA 2DXNA 4AEJA 2ZOAA 3DORA 1FC9A
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2RRL A; 
#chains in the Genus database with same CATH topology
 3AGE A;  1K32 A;  2B78 A;  3IH8 A;  1H4Z A;  3LLO A;  3F43 A;  1WXW A;  1TIL B;  4JC0 A;  4L1C A;  3LDF A;  5EZB A;  3GVL A;  4DGH A;  3OIZ A;  2DXN A;  3MGL A;  3DOR A;  3ZTB A;  1N6F A;  3V8V A;  1J7X A;  2OAS A;  1T6R A;  3GVJ A;  1FC7 A;  2VY9 A;  3K50 A;  3AGD A;  4DMG A;  4L8K A;  1H4Y A;  1N6D A;  4GHN A;  1SBO A;  5EUX A;  3EH7 A;  2ZOA A;  3GHF A;  3V97 A;  3GVK A;  1FCF A;  1AUZ A;  3JU4 A;  4QTP A;  2RRL A;  1TH8 B;  1TID B;  4HYL A;  4DGF A;  3GK7 A;  4AE2 A;  1V0F A;  3ZXN A;  2DXL A;  5EUU A;  3D3U A;  3DUP A;  3IHB A;  1HF2 A;  4AEJ A;  1FC9 A;  3MOG A;  1BUZ A;  4XS5 A;  5EUS A;  1H4X A;  3D03 A;  3LKL A;  2KA5 A;  3IH9 A;  1FC6 A;  1VC1 A;  1WXX A;  3IF5 A;  3DJA A;  1BPL A;  2ZO9 B;  3C0K A;  4HIZ A;  2AS0 A;  3IHA A;  5EUW A;  1N6E A;  2KLN A;  3VSE A;  1THN B;  2CWW A;  3GMF A;  3QDQ A;  3T6O A;  3NY7 A;  5EUZ A;  1V0E A;  3OIR A; 
#chains in the Genus database with same CATH homology
 3MOG A;  1K32 A;  3GHF A;  1N6F A;  3D03 A;  1J7X A;  1FCF A;  2RRL A;  1FC6 A;  1FC7 A;  3DJA A;  3K50 A;  4JC0 A;  1BPL A;  2ZO9 B;  4L1C A;  4AE2 A;  1N6E A;  4L8K A;  2DXL A;  1N6D A;  4GHN A;  3GMF A;  3DUP A;  2DXN A;  4AEJ A;  2ZOA A;  3DOR A;  1FC9 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2RRLA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations